HEADER OXIDOREDUCTASE 08-MAR-16 5FYM TITLE CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLASE UTY IN TITLE 2 COMPLEX WITH D-2-HYDROXYGLUTARATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE DEMETHYLASE UTY; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: JMJC DOMAIN, RESIDUES 878-1347; COMPND 5 SYNONYM: UBIQUITOUSLY-TRANSCRIBED TPR PROTEIN ON THE Y CHROMOSOME, COMPND 6 UBIQUITOUSLY-TRANSCRIBED Y CHROMOSOME TETRATRICOPEPTIDE REPEAT COMPND 7 PROTEIN; COMPND 8 EC: 1.14.11.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9 KEYWDS OXIDOREDUCTASE, TCA INTERMEDIATE EXPDTA X-RAY DIFFRACTION AUTHOR R.NOWAK,T.KROJER,C.JOHANSSON,C.GILEADI,K.KUPINSKA,F.VON DELFT, AUTHOR 2 C.H.ARROWSMITH,C.BOUNTRA,A.EDWARDS,U.OPPERMANN REVDAT 3 10-JAN-24 5FYM 1 REMARK LINK REVDAT 2 24-JAN-18 5FYM 1 JRNL REVDAT 1 16-MAR-16 5FYM 0 JRNL AUTH R.NOWAK,T.KROJER,C.JOHANSSON,C.GILEADI,K.KUPINSKA, JRNL AUTH 2 F.VON DELFT,C.H.ARROWSMITH,C.BOUNTRA,A.EDWARDS,U.OPPERMANN JRNL TITL CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE JRNL TITL 2 DEMETHYLASE UTY IN COMPLEX WITH D-2- HYDROXYGLUTARATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 79098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.8230 - 6.0645 1.00 2888 158 0.1658 0.2139 REMARK 3 2 6.0645 - 4.8170 1.00 2781 140 0.1608 0.1698 REMARK 3 3 4.8170 - 4.2090 1.00 2734 139 0.1411 0.1947 REMARK 3 4 4.2090 - 3.8246 1.00 2728 140 0.1573 0.1909 REMARK 3 5 3.8246 - 3.5508 1.00 2698 155 0.1715 0.2344 REMARK 3 6 3.5508 - 3.3416 1.00 2709 137 0.1838 0.2435 REMARK 3 7 3.3416 - 3.1743 1.00 2694 148 0.1856 0.2445 REMARK 3 8 3.1743 - 3.0362 1.00 2650 177 0.2005 0.2664 REMARK 3 9 3.0362 - 2.9194 1.00 2672 142 0.2029 0.2531 REMARK 3 10 2.9194 - 2.8187 1.00 2707 127 0.1955 0.2860 REMARK 3 11 2.8187 - 2.7306 1.00 2678 131 0.1921 0.2831 REMARK 3 12 2.7306 - 2.6525 1.00 2691 157 0.2048 0.2583 REMARK 3 13 2.6525 - 2.5827 1.00 2652 132 0.2028 0.2602 REMARK 3 14 2.5827 - 2.5197 1.00 2677 130 0.2000 0.2671 REMARK 3 15 2.5197 - 2.4624 1.00 2678 143 0.2059 0.2537 REMARK 3 16 2.4624 - 2.4101 1.00 2685 134 0.2182 0.2639 REMARK 3 17 2.4101 - 2.3619 1.00 2662 126 0.2257 0.3159 REMARK 3 18 2.3619 - 2.3173 1.00 2664 144 0.2276 0.3109 REMARK 3 19 2.3173 - 2.2759 1.00 2652 139 0.2333 0.2763 REMARK 3 20 2.2759 - 2.2373 1.00 2675 145 0.2315 0.2882 REMARK 3 21 2.2373 - 2.2013 1.00 2646 133 0.2532 0.3314 REMARK 3 22 2.2013 - 2.1674 1.00 2651 144 0.2585 0.2903 REMARK 3 23 2.1674 - 2.1355 1.00 2638 152 0.2601 0.3148 REMARK 3 24 2.1355 - 2.1054 1.00 2655 146 0.2668 0.3217 REMARK 3 25 2.1054 - 2.0770 1.00 2628 156 0.2830 0.3213 REMARK 3 26 2.0770 - 2.0500 1.00 2655 130 0.2996 0.3714 REMARK 3 27 2.0500 - 2.0244 1.00 2635 135 0.2970 0.3301 REMARK 3 28 2.0244 - 2.0000 1.00 2632 143 0.3018 0.3376 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7477 REMARK 3 ANGLE : 1.011 10151 REMARK 3 CHIRALITY : 0.043 1117 REMARK 3 PLANARITY : 0.005 1300 REMARK 3 DIHEDRAL : 13.100 2683 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FYM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1290066389. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79206 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 36.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 1.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: DIMPLE REMARK 200 STARTING MODEL: PDB ENTRY 3ZLI REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.4, 0.2M TRIMETHYLAMINE REMARK 280 N-OXIDE, 15% PEG3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.24000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.65000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.67000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.65000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.24000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.67000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 798 REMARK 465 LEU A 799 REMARK 465 PRO A 800 REMARK 465 THR A 923 REMARK 465 GLN A 924 REMARK 465 HIS A 925 REMARK 465 LYS A 926 REMARK 465 ASP A 927 REMARK 465 HIS A 928 REMARK 465 SER A 929 REMARK 465 ASP A 930 REMARK 465 ASN A 931 REMARK 465 GLU A 932 REMARK 465 SER A 933 REMARK 465 THR A 934 REMARK 465 SER A 935 REMARK 465 SER A 936 REMARK 465 GLU A 937 REMARK 465 ASN A 938 REMARK 465 SER A 939 REMARK 465 GLY A 940 REMARK 465 ARG A 941 REMARK 465 ARG A 942 REMARK 465 ARG A 943 REMARK 465 SER A 1266 REMARK 465 SER A 1267 REMARK 465 SER A 1268 REMARK 465 ALA A 1269 REMARK 465 GLU A 1270 REMARK 465 ASN A 1271 REMARK 465 LEU A 1272 REMARK 465 TYR A 1273 REMARK 465 PHE A 1274 REMARK 465 GLN A 1275 REMARK 465 MET B 798 REMARK 465 LEU B 799 REMARK 465 PRO B 800 REMARK 465 LYS B 801 REMARK 465 LYS B 921 REMARK 465 ARG B 922 REMARK 465 THR B 923 REMARK 465 GLN B 924 REMARK 465 HIS B 925 REMARK 465 LYS B 926 REMARK 465 ASP B 927 REMARK 465 HIS B 928 REMARK 465 SER B 929 REMARK 465 ASP B 930 REMARK 465 ASN B 931 REMARK 465 GLU B 932 REMARK 465 SER B 933 REMARK 465 THR B 934 REMARK 465 SER B 935 REMARK 465 SER B 936 REMARK 465 GLU B 937 REMARK 465 ASN B 938 REMARK 465 SER B 939 REMARK 465 GLY B 940 REMARK 465 ARG B 941 REMARK 465 ARG B 942 REMARK 465 ARG B 943 REMARK 465 LYS B 944 REMARK 465 GLY B 945 REMARK 465 TYR B 1273 REMARK 465 PHE B 1274 REMARK 465 GLN B 1275 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 801 CG CD CE NZ REMARK 470 ASP A 802 CG OD1 OD2 REMARK 470 LYS A 803 CG CD CE NZ REMARK 470 LYS A 832 CE NZ REMARK 470 LYS A 855 CD CE NZ REMARK 470 GLU A 859 CG CD OE1 OE2 REMARK 470 LYS A 886 CE NZ REMARK 470 GLU A 892 CG CD OE1 OE2 REMARK 470 GLU A 917 CG CD OE1 OE2 REMARK 470 GLU A 920 CG CD OE1 OE2 REMARK 470 ARG A 922 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 962 CD CE NZ REMARK 470 LYS A1051 CG CD CE NZ REMARK 470 LYS A1155 CG CD CE NZ REMARK 470 LYS A1169 CE NZ REMARK 470 ASP A1193 CG OD1 OD2 REMARK 470 LYS A1220 CE NZ REMARK 470 LYS A1235 CG CD CE NZ REMARK 470 GLU A1249 CG CD OE1 OE2 REMARK 470 ASP A1250 CG OD1 OD2 REMARK 470 LYS B 803 CD CE NZ REMARK 470 GLU B 814 CG CD OE1 OE2 REMARK 470 ARG B 817 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 846 CE NZ REMARK 470 LYS B 855 CE NZ REMARK 470 GLU B 859 CD OE1 OE2 REMARK 470 LYS B 886 CE NZ REMARK 470 GLU B 892 CG CD OE1 OE2 REMARK 470 ARG B 895 CD NE CZ NH1 NH2 REMARK 470 LYS B 902 CE NZ REMARK 470 GLU B 917 CD OE1 OE2 REMARK 470 LYS B 965 CE NZ REMARK 470 LYS B1155 CG CD CE NZ REMARK 470 GLU B1249 CG CD OE1 OE2 REMARK 470 GLN B1253 CG CD OE1 NE2 REMARK 470 LEU B1272 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 3023 O HOH B 3190 2.15 REMARK 500 O HOH A 3081 O HOH A 3206 2.15 REMARK 500 O HOH A 3161 O HOH A 3163 2.16 REMARK 500 ND2 ASN B 805 O HOH B 3005 2.16 REMARK 500 O HOH B 3090 O HOH B 3091 2.16 REMARK 500 O LYS A 962 O HOH A 3104 2.17 REMARK 500 O HOH B 3079 O HOH B 3096 2.17 REMARK 500 O HOH A 3179 O HOH A 3318 2.17 REMARK 500 O HOH B 3255 O HOH B 3262 2.18 REMARK 500 O HOH A 3315 O HOH B 3281 2.18 REMARK 500 OD1 ASP B 1153 O HOH B 3225 2.18 REMARK 500 O HOH B 3151 O HOH B 3154 2.19 REMARK 500 OE1 GLU B 1158 O HOH B 3229 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN B 919 O HOH A 3008 3454 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 861 70.50 -153.73 REMARK 500 ALA A 876 -121.48 48.22 REMARK 500 SER A 893 72.27 -150.45 REMARK 500 LYS A 921 -159.73 67.72 REMARK 500 MET A 997 -63.19 -104.51 REMARK 500 ASN A1208 -67.15 71.73 REMARK 500 ALA B 876 -113.38 44.51 REMARK 500 SER B 893 81.01 -155.21 REMARK 500 MET B 997 -61.13 -107.45 REMARK 500 ALA B1181 33.30 -94.28 REMARK 500 HIS B1188 -35.67 -136.08 REMARK 500 ILE B1201 -61.46 -98.12 REMARK 500 ASN B1208 -74.17 74.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A2266 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A1014 NE2 REMARK 620 2 GLU A1016 OE2 97.6 REMARK 620 3 HIS A1094 NE2 84.1 86.8 REMARK 620 4 2HG A2267 O3 91.7 162.0 109.6 REMARK 620 5 2HG A2267 O2 164.2 97.8 99.8 72.6 REMARK 620 6 HOH A3145 O 92.2 78.1 163.9 86.2 88.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A4002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1199 SG REMARK 620 2 CYS A1202 SG 110.2 REMARK 620 3 CYS A1226 SG 107.5 112.8 REMARK 620 4 CYS A1229 SG 110.5 109.8 105.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B2273 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B1014 NE2 REMARK 620 2 GLU B1016 OE2 99.9 REMARK 620 3 HIS B1094 NE2 82.6 81.8 REMARK 620 4 2HG B2274 O1 170.1 89.9 100.7 REMARK 620 5 2HG B2274 O3 89.0 165.0 111.6 81.1 REMARK 620 6 HOH B3137 O 93.0 82.1 162.3 86.5 85.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B4002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1199 SG REMARK 620 2 CYS B1202 SG 109.9 REMARK 620 3 CYS B1226 SG 113.5 112.0 REMARK 620 4 CYS B1229 SG 106.6 109.1 105.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 4002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 4002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 2273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 2266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2HG A 2267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2HG B 2274 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2275 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2268 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2269 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2270 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2271 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2272 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2276 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2277 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2278 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2273 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2279 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2280 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2281 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2282 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2274 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2275 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2283 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2276 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2284 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2285 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2286 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2287 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2288 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2277 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2278 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2279 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2280 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2281 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FXV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLASE UTY REMARK 900 IN COMPLEX WITH N05859B REMARK 900 RELATED ID: 5FXW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLASE UTY REMARK 900 IN COMPLEX WITH FUMARATE REMARK 900 RELATED ID: 5FXX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLASE UTY REMARK 900 IN COMPLEX WITH OXALOACETATE REMARK 900 RELATED ID: 5FXZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLASE UTY REMARK 900 IN COMPLEX WITH CITRATE REMARK 900 RELATED ID: 5FY0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLASE UTY REMARK 900 IN COMPLEX WITH L-MALATE REMARK 900 RELATED ID: 5FY1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLASE UTY REMARK 900 IN COMPLEX WITH N08619B REMARK 900 RELATED ID: 5FY4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN JARID1B IN REMARK 900 COMPLEX WITH SUCCINATE REMARK 900 RELATED ID: 5FY5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN JARID1B IN REMARK 900 COMPLEX WITH FUMARATE REMARK 900 RELATED ID: 5FY7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLASE UTY REMARK 900 IN COMPLEX WITH SUCCINATE REMARK 900 RELATED ID: 5FY8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN JMJD2A IN COMPLEX WITH D- THREO- REMARK 900 ISOCITRATE REMARK 900 RELATED ID: 5FY9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN JARID1B IN REMARK 900 COMPLEX WITH PYRUVATE REMARK 900 RELATED ID: 5FYB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN JARID1B IN REMARK 900 COMPLEX WITH MC1648 REMARK 900 RELATED ID: 5FYC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN JMJD2A IN COMPLEX WITH SUCCINATE REMARK 900 RELATED ID: 5FYH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN JMJD2A IN COMPLEX WITH FUMARATE REMARK 900 RELATED ID: 5FYI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN JMJD2A IN COMPLEX WITH PYRUVATE DBREF 5FYM A 799 1268 UNP O14607 UTY_HUMAN 878 1347 DBREF 5FYM B 799 1268 UNP O14607 UTY_HUMAN 878 1347 SEQADV 5FYM MET A 798 UNP O14607 EXPRESSION TAG SEQADV 5FYM ALA A 1269 UNP O14607 EXPRESSION TAG SEQADV 5FYM GLU A 1270 UNP O14607 EXPRESSION TAG SEQADV 5FYM ASN A 1271 UNP O14607 EXPRESSION TAG SEQADV 5FYM LEU A 1272 UNP O14607 EXPRESSION TAG SEQADV 5FYM TYR A 1273 UNP O14607 EXPRESSION TAG SEQADV 5FYM PHE A 1274 UNP O14607 EXPRESSION TAG SEQADV 5FYM GLN A 1275 UNP O14607 EXPRESSION TAG SEQADV 5FYM MET B 798 UNP O14607 EXPRESSION TAG SEQADV 5FYM ALA B 1269 UNP O14607 EXPRESSION TAG SEQADV 5FYM GLU B 1270 UNP O14607 EXPRESSION TAG SEQADV 5FYM ASN B 1271 UNP O14607 EXPRESSION TAG SEQADV 5FYM LEU B 1272 UNP O14607 EXPRESSION TAG SEQADV 5FYM TYR B 1273 UNP O14607 EXPRESSION TAG SEQADV 5FYM PHE B 1274 UNP O14607 EXPRESSION TAG SEQADV 5FYM GLN B 1275 UNP O14607 EXPRESSION TAG SEQRES 1 A 478 MET LEU PRO LYS ASP LYS LEU ASN PRO PRO THR PRO SER SEQRES 2 A 478 ILE TYR LEU GLU ASN LYS ARG ASP ALA PHE PHE PRO PRO SEQRES 3 A 478 LEU HIS GLN PHE CYS THR ASN PRO LYS ASN PRO VAL THR SEQRES 4 A 478 VAL ILE ARG GLY LEU ALA GLY ALA LEU LYS LEU ASP LEU SEQRES 5 A 478 GLY LEU PHE SER THR LYS THR LEU VAL GLU ALA ASN ASN SEQRES 6 A 478 GLU HIS MET VAL GLU VAL ARG THR GLN LEU LEU GLN PRO SEQRES 7 A 478 ALA ASP GLU ASN TRP ASP PRO THR GLY THR LYS LYS ILE SEQRES 8 A 478 TRP ARG CYS GLU SER ASN ARG SER HIS THR THR ILE ALA SEQRES 9 A 478 LYS TYR ALA GLN TYR GLN ALA SER SER PHE GLN GLU SER SEQRES 10 A 478 LEU ARG GLU GLU ASN GLU LYS ARG THR GLN HIS LYS ASP SEQRES 11 A 478 HIS SER ASP ASN GLU SER THR SER SER GLU ASN SER GLY SEQRES 12 A 478 ARG ARG ARG LYS GLY PRO PHE LYS THR ILE LYS PHE GLY SEQRES 13 A 478 THR ASN ILE ASP LEU SER ASP ASN LYS LYS TRP LYS LEU SEQRES 14 A 478 GLN LEU HIS GLU LEU THR LYS LEU PRO ALA PHE ALA ARG SEQRES 15 A 478 VAL VAL SER ALA GLY ASN LEU LEU THR HIS VAL GLY HIS SEQRES 16 A 478 THR ILE LEU GLY MET ASN THR VAL GLN LEU TYR MET LYS SEQRES 17 A 478 VAL PRO GLY SER ARG THR PRO GLY HIS GLN GLU ASN ASN SEQRES 18 A 478 ASN PHE CYS SER VAL ASN ILE ASN ILE GLY PRO GLY ASP SEQRES 19 A 478 CYS GLU TRP PHE VAL VAL PRO GLU ASP TYR TRP GLY VAL SEQRES 20 A 478 LEU ASN ASP PHE CYS GLU LYS ASN ASN LEU ASN PHE LEU SEQRES 21 A 478 MET SER SER TRP TRP PRO ASN LEU GLU ASP LEU TYR GLU SEQRES 22 A 478 ALA ASN VAL PRO VAL TYR ARG PHE ILE GLN ARG PRO GLY SEQRES 23 A 478 ASP LEU VAL TRP ILE ASN ALA GLY THR VAL HIS TRP VAL SEQRES 24 A 478 GLN ALA VAL GLY TRP CYS ASN ASN ILE ALA TRP ASN VAL SEQRES 25 A 478 GLY PRO LEU THR ALA CYS GLN TYR LYS LEU ALA VAL GLU SEQRES 26 A 478 ARG TYR GLU TRP ASN LYS LEU LYS SER VAL LYS SER PRO SEQRES 27 A 478 VAL PRO MET VAL HIS LEU SER TRP ASN MET ALA ARG ASN SEQRES 28 A 478 ILE LYS VAL SER ASP PRO LYS LEU PHE GLU MET ILE LYS SEQRES 29 A 478 TYR CYS LEU LEU LYS ILE LEU LYS GLN TYR GLN THR LEU SEQRES 30 A 478 ARG GLU ALA LEU VAL ALA ALA GLY LYS GLU VAL ILE TRP SEQRES 31 A 478 HIS GLY ARG THR ASN ASP GLU PRO ALA HIS TYR CYS SER SEQRES 32 A 478 ILE CYS GLU VAL GLU VAL PHE ASN LEU LEU PHE VAL THR SEQRES 33 A 478 ASN GLU SER ASN THR GLN LYS THR TYR ILE VAL HIS CYS SEQRES 34 A 478 HIS ASP CYS ALA ARG LYS THR SER LYS SER LEU GLU ASN SEQRES 35 A 478 PHE VAL VAL LEU GLU GLN TYR LYS MET GLU ASP LEU ILE SEQRES 36 A 478 GLN VAL TYR ASP GLN PHE THR LEU ALA LEU SER LEU SER SEQRES 37 A 478 SER SER SER ALA GLU ASN LEU TYR PHE GLN SEQRES 1 B 478 MET LEU PRO LYS ASP LYS LEU ASN PRO PRO THR PRO SER SEQRES 2 B 478 ILE TYR LEU GLU ASN LYS ARG ASP ALA PHE PHE PRO PRO SEQRES 3 B 478 LEU HIS GLN PHE CYS THR ASN PRO LYS ASN PRO VAL THR SEQRES 4 B 478 VAL ILE ARG GLY LEU ALA GLY ALA LEU LYS LEU ASP LEU SEQRES 5 B 478 GLY LEU PHE SER THR LYS THR LEU VAL GLU ALA ASN ASN SEQRES 6 B 478 GLU HIS MET VAL GLU VAL ARG THR GLN LEU LEU GLN PRO SEQRES 7 B 478 ALA ASP GLU ASN TRP ASP PRO THR GLY THR LYS LYS ILE SEQRES 8 B 478 TRP ARG CYS GLU SER ASN ARG SER HIS THR THR ILE ALA SEQRES 9 B 478 LYS TYR ALA GLN TYR GLN ALA SER SER PHE GLN GLU SER SEQRES 10 B 478 LEU ARG GLU GLU ASN GLU LYS ARG THR GLN HIS LYS ASP SEQRES 11 B 478 HIS SER ASP ASN GLU SER THR SER SER GLU ASN SER GLY SEQRES 12 B 478 ARG ARG ARG LYS GLY PRO PHE LYS THR ILE LYS PHE GLY SEQRES 13 B 478 THR ASN ILE ASP LEU SER ASP ASN LYS LYS TRP LYS LEU SEQRES 14 B 478 GLN LEU HIS GLU LEU THR LYS LEU PRO ALA PHE ALA ARG SEQRES 15 B 478 VAL VAL SER ALA GLY ASN LEU LEU THR HIS VAL GLY HIS SEQRES 16 B 478 THR ILE LEU GLY MET ASN THR VAL GLN LEU TYR MET LYS SEQRES 17 B 478 VAL PRO GLY SER ARG THR PRO GLY HIS GLN GLU ASN ASN SEQRES 18 B 478 ASN PHE CYS SER VAL ASN ILE ASN ILE GLY PRO GLY ASP SEQRES 19 B 478 CYS GLU TRP PHE VAL VAL PRO GLU ASP TYR TRP GLY VAL SEQRES 20 B 478 LEU ASN ASP PHE CYS GLU LYS ASN ASN LEU ASN PHE LEU SEQRES 21 B 478 MET SER SER TRP TRP PRO ASN LEU GLU ASP LEU TYR GLU SEQRES 22 B 478 ALA ASN VAL PRO VAL TYR ARG PHE ILE GLN ARG PRO GLY SEQRES 23 B 478 ASP LEU VAL TRP ILE ASN ALA GLY THR VAL HIS TRP VAL SEQRES 24 B 478 GLN ALA VAL GLY TRP CYS ASN ASN ILE ALA TRP ASN VAL SEQRES 25 B 478 GLY PRO LEU THR ALA CYS GLN TYR LYS LEU ALA VAL GLU SEQRES 26 B 478 ARG TYR GLU TRP ASN LYS LEU LYS SER VAL LYS SER PRO SEQRES 27 B 478 VAL PRO MET VAL HIS LEU SER TRP ASN MET ALA ARG ASN SEQRES 28 B 478 ILE LYS VAL SER ASP PRO LYS LEU PHE GLU MET ILE LYS SEQRES 29 B 478 TYR CYS LEU LEU LYS ILE LEU LYS GLN TYR GLN THR LEU SEQRES 30 B 478 ARG GLU ALA LEU VAL ALA ALA GLY LYS GLU VAL ILE TRP SEQRES 31 B 478 HIS GLY ARG THR ASN ASP GLU PRO ALA HIS TYR CYS SER SEQRES 32 B 478 ILE CYS GLU VAL GLU VAL PHE ASN LEU LEU PHE VAL THR SEQRES 33 B 478 ASN GLU SER ASN THR GLN LYS THR TYR ILE VAL HIS CYS SEQRES 34 B 478 HIS ASP CYS ALA ARG LYS THR SER LYS SER LEU GLU ASN SEQRES 35 B 478 PHE VAL VAL LEU GLU GLN TYR LYS MET GLU ASP LEU ILE SEQRES 36 B 478 GLN VAL TYR ASP GLN PHE THR LEU ALA LEU SER LEU SER SEQRES 37 B 478 SER SER SER ALA GLU ASN LEU TYR PHE GLN HET MN A2266 1 HET 2HG A2267 10 HET EDO A2268 4 HET EDO A2269 4 HET EDO A2270 4 HET EDO A2271 4 HET EDO A2272 4 HET EDO A2273 4 HET EDO A2274 4 HET EDO A2275 4 HET EDO A2276 4 HET EDO A2277 4 HET EDO A2278 4 HET EDO A2279 4 HET EDO A2280 4 HET EDO A2281 4 HET ZN A4002 1 HET MN B2273 1 HET 2HG B2274 10 HET EDO B2275 4 HET EDO B2276 4 HET EDO B2277 4 HET EDO B2278 4 HET EDO B2279 4 HET EDO B2280 4 HET EDO B2281 4 HET EDO B2282 4 HET EDO B2283 4 HET EDO B2284 4 HET EDO B2285 4 HET EDO B2286 4 HET EDO B2287 4 HET EDO B2288 4 HET ZN B4002 1 HETNAM MN MANGANESE (II) ION HETNAM 2HG (2R)-2-HYDROXYPENTANEDIOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MN 2(MN 2+) FORMUL 4 2HG 2(C5 H8 O5) FORMUL 5 EDO 28(C2 H6 O2) FORMUL 19 ZN 2(ZN 2+) FORMUL 37 HOH *639(H2 O) HELIX 1 1 LYS A 801 ASN A 805 5 5 HELIX 2 2 ASN A 815 PHE A 821 1 7 HELIX 3 3 PHE A 821 ASN A 830 1 10 HELIX 4 4 GLY A 840 LYS A 846 1 7 HELIX 5 5 ASP A 848 PHE A 852 5 5 HELIX 6 6 SER A 853 ASN A 862 1 10 HELIX 7 7 ILE A 900 ASN A 919 1 20 HELIX 8 8 TRP A 964 LEU A 971 1 8 HELIX 9 9 THR A 972 LEU A 974 5 3 HELIX 10 10 PRO A 975 ARG A 979 5 5 HELIX 11 11 ASN A 985 VAL A 990 1 6 HELIX 12 12 GLU A 1016 PHE A 1020 5 5 HELIX 13 13 PRO A 1038 ASP A 1040 5 3 HELIX 14 14 TYR A 1041 ASN A 1052 1 12 HELIX 15 15 ASN A 1064 ALA A 1071 1 8 HELIX 16 16 THR A 1113 LYS A 1130 1 18 HELIX 17 17 PRO A 1137 ILE A 1149 1 13 HELIX 18 18 ASP A 1153 ALA A 1181 1 29 HELIX 19 19 ASN A 1214 GLN A 1219 1 6 HELIX 20 20 CYS A 1226 SER A 1234 1 9 HELIX 21 21 LYS A 1247 PHE A 1258 1 12 HELIX 22 22 ASN B 815 PHE B 820 1 6 HELIX 23 23 PHE B 821 ASN B 830 1 10 HELIX 24 24 GLY B 840 LYS B 846 1 7 HELIX 25 25 ASP B 848 PHE B 852 5 5 HELIX 26 26 SER B 853 ASN B 862 1 10 HELIX 27 27 ILE B 900 GLU B 920 1 21 HELIX 28 28 TRP B 964 LEU B 971 1 8 HELIX 29 29 THR B 972 LEU B 974 5 3 HELIX 30 30 PRO B 975 ARG B 979 5 5 HELIX 31 31 GLU B 1016 PHE B 1020 5 5 HELIX 32 32 PRO B 1038 ASP B 1040 5 3 HELIX 33 33 TYR B 1041 ASN B 1052 1 12 HELIX 34 34 ASN B 1064 ALA B 1071 1 8 HELIX 35 35 THR B 1113 LYS B 1130 1 18 HELIX 36 36 PRO B 1137 ASN B 1148 1 12 HELIX 37 37 ASP B 1153 ALA B 1181 1 29 HELIX 38 38 ASN B 1214 GLN B 1219 1 6 HELIX 39 39 CYS B 1226 SER B 1234 1 9 HELIX 40 40 LYS B 1247 PHE B 1258 1 12 SHEET 1 AA 9 SER A 810 TYR A 812 0 SHEET 2 AA 9 VAL A 835 ARG A 839 1 O VAL A 837 N ILE A 811 SHEET 3 AA 9 LEU A1085 ILE A1088 -1 O LEU A1085 N ILE A 838 SHEET 4 AA 9 CYS A1021 PRO A1029 -1 O SER A1022 N ILE A1088 SHEET 5 AA 9 CYS A1102 VAL A1109 -1 O ASN A1103 N ILE A1027 SHEET 6 AA 9 GLN A1001 LYS A1005 -1 O GLN A1001 N ALA A1106 SHEET 7 AA 9 THR A 949 ASP A 957 -1 O GLY A 953 N MET A1004 SHEET 8 AA 9 MET A 865 LEU A 872 -1 O GLU A 867 N THR A 954 SHEET 9 AA 9 SER A 893 THR A 899 -1 O ASN A 894 N THR A 870 SHEET 1 AB 4 ARG A1010 HIS A1014 0 SHEET 2 AB 4 VAL A1093 ALA A1098 -1 O HIS A1094 N HIS A1014 SHEET 3 AB 4 CYS A1032 VAL A1037 -1 O GLU A1033 N GLN A1097 SHEET 4 AB 4 TYR A1076 GLN A1080 -1 O TYR A1076 N VAL A1036 SHEET 1 AC 3 VAL A1185 TRP A1187 0 SHEET 2 AC 3 PHE A1240 GLU A1244 1 O VAL A1242 N ILE A1186 SHEET 3 AC 3 LEU A1209 THR A1213 -1 O LEU A1210 N LEU A1243 SHEET 1 AD 2 HIS A1197 TYR A1198 0 SHEET 2 AD 2 GLU A1205 VAL A1206 -1 O VAL A1206 N HIS A1197 SHEET 1 BA 9 SER B 810 TYR B 812 0 SHEET 2 BA 9 VAL B 835 ARG B 839 1 O VAL B 837 N ILE B 811 SHEET 3 BA 9 LEU B1085 ILE B1088 -1 O LEU B1085 N ILE B 838 SHEET 4 BA 9 CYS B1021 PRO B1029 -1 O SER B1022 N ILE B1088 SHEET 5 BA 9 CYS B1102 VAL B1109 -1 O ASN B1103 N ILE B1027 SHEET 6 BA 9 GLN B1001 LYS B1005 -1 O GLN B1001 N ALA B1106 SHEET 7 BA 9 THR B 949 ASP B 957 -1 O GLY B 953 N MET B1004 SHEET 8 BA 9 MET B 865 LEU B 872 -1 O GLU B 867 N THR B 954 SHEET 9 BA 9 SER B 893 THR B 899 -1 O ASN B 894 N THR B 870 SHEET 1 BB 4 ARG B1010 HIS B1014 0 SHEET 2 BB 4 VAL B1093 ALA B1098 -1 O HIS B1094 N HIS B1014 SHEET 3 BB 4 CYS B1032 VAL B1037 -1 O GLU B1033 N GLN B1097 SHEET 4 BB 4 TYR B1076 GLN B1080 -1 O TYR B1076 N VAL B1036 SHEET 1 BC 2 ILE B1149 VAL B1151 0 SHEET 2 BC 2 ALA B1269 ASN B1271 -1 O GLU B1270 N LYS B1150 SHEET 1 BD 3 VAL B1185 TRP B1187 0 SHEET 2 BD 3 PHE B1240 GLU B1244 1 O VAL B1242 N ILE B1186 SHEET 3 BD 3 LEU B1209 THR B1213 -1 O LEU B1210 N LEU B1243 SHEET 1 BE 2 HIS B1197 TYR B1198 0 SHEET 2 BE 2 GLU B1205 VAL B1206 -1 O VAL B1206 N HIS B1197 LINK NE2 HIS A1014 MN MN A2266 1555 1555 2.33 LINK OE2 GLU A1016 MN MN A2266 1555 1555 2.00 LINK NE2 HIS A1094 MN MN A2266 1555 1555 2.18 LINK SG CYS A1199 ZN ZN A4002 1555 1555 2.17 LINK SG CYS A1202 ZN ZN A4002 1555 1555 2.39 LINK SG CYS A1226 ZN ZN A4002 1555 1555 2.25 LINK SG CYS A1229 ZN ZN A4002 1555 1555 2.44 LINK MN MN A2266 O3 2HG A2267 1555 1555 2.26 LINK MN MN A2266 O2 2HG A2267 1555 1555 2.16 LINK MN MN A2266 O HOH A3145 1555 1555 2.11 LINK NE2 HIS B1014 MN MN B2273 1555 1555 2.30 LINK OE2 GLU B1016 MN MN B2273 1555 1555 2.17 LINK NE2 HIS B1094 MN MN B2273 1555 1555 2.38 LINK SG CYS B1199 ZN ZN B4002 1555 1555 2.25 LINK SG CYS B1202 ZN ZN B4002 1555 1555 2.39 LINK SG CYS B1226 ZN ZN B4002 1555 1555 2.22 LINK SG CYS B1229 ZN ZN B4002 1555 1555 2.35 LINK MN MN B2273 O1 2HG B2274 1555 1555 2.23 LINK MN MN B2273 O3 2HG B2274 1555 1555 2.20 LINK MN MN B2273 O HOH B3137 1555 1555 2.37 CISPEP 1 GLY A 945 PRO A 946 0 -3.86 CISPEP 2 GLY A 1028 PRO A 1029 0 8.80 CISPEP 3 GLY B 1028 PRO B 1029 0 4.37 SITE 1 AC1 4 CYS A1199 CYS A1202 CYS A1226 CYS A1229 SITE 1 AC2 4 CYS B1199 CYS B1202 CYS B1226 CYS B1229 SITE 1 AC3 5 HIS B1014 GLU B1016 HIS B1094 2HG B2274 SITE 2 AC3 5 HOH B3137 SITE 1 AC4 5 HIS A1014 GLU A1016 HIS A1094 2HG A2267 SITE 2 AC4 5 HOH A3145 SITE 1 AC5 14 LYS A1005 THR A1011 HIS A1014 GLU A1016 SITE 2 AC5 14 SER A1022 ASN A1024 TRP A1034 HIS A1094 SITE 3 AC5 14 ALA A1106 MN A2266 EDO A2278 HOH A3140 SITE 4 AC5 14 HOH A3145 HOH A3316 SITE 1 AC6 14 LYS B1005 THR B1011 HIS B1014 GLU B1016 SITE 2 AC6 14 SER B1022 ASN B1024 TRP B1034 HIS B1094 SITE 3 AC6 14 ALA B1106 MN B2273 EDO B2282 HOH B3130 SITE 4 AC6 14 HOH B3131 HOH B3137 SITE 1 AC7 5 ILE B 888 TRP B 889 ARG B 890 ASN B1052 SITE 2 AC7 5 HOH B3308 SITE 1 AC8 9 SER A 853 THR A 854 GLN A 907 GLY A1028 SITE 2 AC8 9 PRO A1029 ASN A1103 EDO A2269 EDO A2273 SITE 3 AC8 9 HOH A3039 SITE 1 AC9 5 PRO A1029 TRP A1101 EDO A2268 EDO A2275 SITE 2 AC9 5 HOH A3083 SITE 1 BC1 4 ARG A1077 HOH A3004 ASN B 919 GLU B 920 SITE 1 BC2 4 HIS A1188 HIS A1197 TYR A1222 VAL A1224 SITE 1 BC3 7 GLY A 840 ALA A 842 GLY A 843 PRO A1082 SITE 2 BC3 7 GLY A1083 ASP A1084 HOH A3318 SITE 1 BC4 6 LYS A 816 VAL B1044 ASP B1047 PHE B1048 SITE 2 BC4 6 ALA B1071 HOH B3309 SITE 1 BC5 5 PHE B 911 PRO B1029 TRP B1101 EDO B2278 SITE 2 BC5 5 HOH B3085 SITE 1 BC6 7 SER B 853 THR B 854 PRO B1029 ASN B1103 SITE 2 BC6 7 EDO B2277 EDO B2286 HOH B3033 SITE 1 BC7 4 GLY A 850 ILE A1027 EDO A2268 HOH A3319 SITE 1 BC8 5 LEU B 971 THR B 972 ARG B 979 VAL B 980 SITE 2 BC8 5 VAL B 981 SITE 1 BC9 5 HIS B 864 ASP B 957 ASP B 960 LYS B 963 SITE 2 BC9 5 HOH B3046 SITE 1 CC1 4 LYS B1128 SER B1131 CYS B1202 HOH B3208 SITE 1 CC2 10 GLY B 996 GLN B1001 TYR B1003 GLU B1016 SITE 2 CC2 10 SER B1022 ALA B1106 TRP B1107 ASN B1108 SITE 3 CC2 10 2HG B2274 HOH B3129 SITE 1 CC3 6 THR A 829 CYS A1021 ASN A1089 PRO A1111 SITE 2 CC3 6 THR A1113 CYS A1115 SITE 1 CC4 6 PRO A1029 GLY A1030 GLY A1100 TRP A1101 SITE 2 CC4 6 EDO A2269 HOH A3320 SITE 1 CC5 3 ARG A1081 SER B 914 GLU B 918 SITE 1 CC6 10 PRO A 831 GLU A1039 ASN A1089 ALA A1090 SITE 2 CC6 10 THR A1092 CYS A1115 LEU A1119 HOH A3160 SITE 3 CC6 10 HOH A3161 HOH A3163 SITE 1 CC7 6 GLU A 863 HOH A3046 ASN B1214 GLU B1215 SITE 2 CC7 6 THR B1218 HOH B3313 SITE 1 CC8 3 HIS B1225 THR B1233 HOH B3314 SITE 1 CC9 5 SER B 853 ILE B1027 GLY B1028 PRO B1029 SITE 2 CC9 5 EDO B2278 SITE 1 DC1 7 THR B 829 CYS B1021 ASN B1089 PRO B1111 SITE 2 DC1 7 THR B1113 CYS B1115 GLN B1116 SITE 1 DC2 5 PRO B1029 GLY B1030 GLY B1100 TRP B1101 SITE 2 DC2 5 HOH B3315 SITE 1 DC3 7 GLN A1170 HIS A1227 ASP A1228 HOH A3236 SITE 2 DC3 7 HOH A3321 THR B1259 LEU B1260 SITE 1 DC4 8 GLY A 996 GLN A1001 TYR A1003 ALA A1106 SITE 2 DC4 8 TRP A1107 ASN A1108 2HG A2267 HOH A3145 SITE 1 DC5 6 HIS A 825 ALA A 976 PHE A 977 SER A 982 SITE 2 DC5 6 GLY A 984 HOH A3322 SITE 1 DC6 3 LYS A 803 TYR A1041 ASN A1072 SITE 1 DC7 5 ILE A 811 PRO A 823 LEU A 824 HOH A3021 SITE 2 DC7 5 HOH A3323 CRYST1 90.480 109.340 117.300 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011052 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009146 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008525 0.00000