HEADER TOXIN 15-MAR-16 5FZX TITLE HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE SPIDER VENOM PEPTIDE U5- TITLE 2 SCYTOTOXIN-STH1A COMPND MOL_ID: 1; COMPND 2 MOLECULE: U5-SCYTOTOXIN-STH1A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCYTODES THORACICA; SOURCE 3 ORGANISM_COMMON: SPITTING SPIDER; SOURCE 4 ORGANISM_TAXID: 1112478; SOURCE 5 ORGAN: VENOM GLAND; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLIC-MBP; SOURCE 11 OTHER_DETAILS: TRANSCRIPT IDENTIFIED FROM CDNA LIBRARY CONSTRUCTED SOURCE 12 FROM VENOM GLAND MRNA KEYWDS TOXIN, SPIDER VENOM PEPTIDE, ICK EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.M.LOENING REVDAT 2 14-JUN-23 5FZX 1 REMARK SSBOND ATOM REVDAT 1 08-JUN-16 5FZX 0 JRNL AUTH N.K.ARIKI,L.E.MUNOZ,E.L.ARMITAGE,F.R.GOODSTEIN,K.G.GEORGE, JRNL AUTH 2 V.L.SMITH,I.VETTER,V.HERZIG,G.F.KING,N.M.LOENING JRNL TITL CHARACTERIZATION OF THREE VENOM PEPTIDES FROM THE SPITTING JRNL TITL 2 SPIDER SCYTODES THORACICA. JRNL REF PLOS ONE V. 11 56291 2016 JRNL REFN ESSN 1932-6203 JRNL PMID 27227898 JRNL DOI 10.1371/JOURNAL.PONE.0156291 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 PAPER CITATION. REMARK 4 REMARK 4 5FZX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1290066494. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0; 298.0 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 0.03; 0.03 REMARK 210 PRESSURE : 1.0 ATM; 1.0 ATM REMARK 210 SAMPLE CONTENTS : 95% H2O/5% D2O; 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 13C CT-HSQC; 13C HSQC; 13C REMARK 210 AROMATIC HSQC; 13C AROMATIC REMARK 210 HSQC2; 15N HMQC (13C/15N SAMPLE); REMARK 210 HCCH TOCSY; HNCACB; HNCACO; REMARK 210 HNCO; HNCOCACB; 15N HMQC2; 15N REMARK 210 HSQC-NOESY; 15N HSQC-TOCSY; 1H REMARK 210 NOESY; 1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TALOS-N 4.12, CCPNMR ANALYSIS REMARK 210 2.4 REMARK 210 METHOD USED : CNS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TOTAL ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C,15N-LABELED U5-SCYTOTOXIN-STH1A, AND REMARK 210 CALCULATED USING ARIA2 WITH WATER REFINEMENT. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 2 -57.84 -158.34 REMARK 500 1 THR A 3 71.12 -156.64 REMARK 500 1 TRP A 23 -48.16 177.80 REMARK 500 2 ASP A 5 75.78 57.58 REMARK 500 2 TRP A 23 -42.34 174.80 REMARK 500 3 GLU A 2 -67.49 -102.78 REMARK 500 3 ASP A 5 69.47 -108.13 REMARK 500 3 THR A 16 121.99 -39.71 REMARK 500 3 TRP A 23 -47.94 170.00 REMARK 500 4 GLU A 2 -176.84 60.45 REMARK 500 4 GLU A 6 -64.57 70.89 REMARK 500 4 TRP A 23 -48.65 -179.81 REMARK 500 5 TRP A 23 -49.14 174.98 REMARK 500 6 GLU A 2 -46.86 -150.95 REMARK 500 6 ASP A 5 47.40 -84.88 REMARK 500 6 THR A 16 118.58 -38.93 REMARK 500 6 TRP A 23 -45.29 178.20 REMARK 500 7 THR A 3 74.73 -164.97 REMARK 500 7 TRP A 23 -50.24 175.89 REMARK 500 8 THR A 3 74.28 61.48 REMARK 500 8 PRO A 4 86.64 -67.48 REMARK 500 8 TRP A 23 -47.59 167.46 REMARK 500 9 GLU A 6 123.19 69.75 REMARK 500 9 THR A 16 112.91 -39.46 REMARK 500 9 TRP A 23 -49.54 123.67 REMARK 500 10 PRO A 4 47.16 -85.43 REMARK 500 10 TRP A 23 -47.93 -179.82 REMARK 500 11 THR A 3 110.89 -163.82 REMARK 500 11 TRP A 23 -94.96 -158.88 REMARK 500 12 THR A 3 -67.10 -137.31 REMARK 500 12 ASP A 5 53.49 -91.93 REMARK 500 12 TRP A 23 -95.46 -151.58 REMARK 500 13 GLU A 2 -47.55 -145.72 REMARK 500 13 PRO A 4 95.75 -65.02 REMARK 500 13 ASP A 5 -159.52 -74.02 REMARK 500 13 THR A 16 115.84 -39.99 REMARK 500 13 TRP A 23 -45.30 175.95 REMARK 500 14 THR A 3 -179.24 172.85 REMARK 500 14 PRO A 4 60.73 -62.83 REMARK 500 14 TRP A 23 -52.05 177.88 REMARK 500 15 THR A 3 83.48 -161.55 REMARK 500 15 TRP A 23 -40.59 177.91 REMARK 500 16 ASP A 5 37.65 -85.62 REMARK 500 16 TRP A 23 -52.10 173.62 REMARK 500 17 GLU A 2 -48.04 -148.01 REMARK 500 17 THR A 3 76.88 61.07 REMARK 500 17 PRO A 4 -168.65 -79.25 REMARK 500 17 TRP A 23 -55.46 -177.87 REMARK 500 18 THR A 3 70.47 -160.68 REMARK 500 18 TRP A 23 -83.78 -144.82 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FZV RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE SPIDER VENOM PEPTIDE REMARK 900 U3-SCYTOTOXIN-STH1A REMARK 900 RELATED ID: 5FZW RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE SPIDER VENOM PEPTIDE REMARK 900 U3-SCYTOTOXIN-STH1H REMARK 900 RELATED ID: 26004 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE DEPOSITED IN THE ARACHNOSERVER SPIDER TOXIN REMARK 999 DATABASE (WWW.ARACHNOSERVER.ORG) DBREF1 5FZX A 1 36 UNP A0A0V633_9ARAC DBREF2 5FZX A A0A0A0V633 36 71 SEQRES 1 A 36 ASP GLU THR PRO ASP GLU CYS VAL THR ARG GLY ASN PHE SEQRES 2 A 36 CYS ALA THR PRO GLU VAL HIS GLY ASP TRP CYS CYS GLY SEQRES 3 A 36 SER LEU LYS CYS VAL SER ASN SER CYS ARG HELIX 1 1 THR A 16 GLY A 21 1 6 SHEET 1 AA 2 LYS A 29 VAL A 31 0 SHEET 2 AA 2 SER A 34 ARG A 36 -1 O SER A 34 N VAL A 31 SSBOND 1 CYS A 7 CYS A 25 1555 1555 2.03 SSBOND 2 CYS A 14 CYS A 30 1555 1555 2.03 SSBOND 3 CYS A 24 CYS A 35 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1