HEADER TRANSFERASE 16-MAR-16 5G02 TITLE CRYSTAL STRUCTURE OF ZEBRAFISH PROTEIN ARGININE METHYLTRANSFERASE 2 TITLE 2 WITH SFG COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE METHYLTRANSFERASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: METHYLATION MODULE, UNP RESIDUES 68-408; COMPND 5 SYNONYM: PROTEIN ARGININE N-METHYLTRANSFERASE 2; COMPND 6 EC: 2.1.1.125; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST20; SOURCE 11 OTHER_DETAILS: BIOSCIENCE IRAK293-C16 KEYWDS TRANSFERASE, S-ADENOSYL-L-METHIONINE, S-ADENOSYL-L- HOMOCYSTEINE EXPDTA X-RAY DIFFRACTION AUTHOR V.CURA,N.TROFFER-CHARLIER,N.MARECHAL,L.BONNEFOND,J.CAVARELLI REVDAT 5 24-APR-19 5G02 1 SOURCE REVDAT 4 01-MAR-17 5G02 1 JRNL REVDAT 3 07-DEC-16 5G02 1 JRNL REVDAT 2 30-NOV-16 5G02 1 JRNL REVDAT 1 09-NOV-16 5G02 0 JRNL AUTH V.CURA,N.MARECHAL,N.TROFFER-CHARLIER,J.M.STRUB, JRNL AUTH 2 M.J.VAN HAREN,N.I.MARTIN,S.CIANFERANI,L.BONNEFOND, JRNL AUTH 3 J.CAVARELLI JRNL TITL STRUCTURAL STUDIES OF PROTEIN ARGININE METHYLTRANSFERASE 2 JRNL TITL 2 REVEAL ITS INTERACTIONS WITH POTENTIAL SUBSTRATES AND JRNL TITL 3 INHIBITORS. JRNL REF FEBS J. V. 284 77 2017 JRNL REFN ISSN 1742-4658 JRNL PMID 27879050 JRNL DOI 10.1111/FEBS.13953 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.3003 - 4.6865 1.00 2812 122 0.1502 0.1822 REMARK 3 2 4.6865 - 3.7203 1.00 2713 140 0.1563 0.1957 REMARK 3 3 3.7203 - 3.2502 1.00 2680 147 0.2161 0.2393 REMARK 3 4 3.2502 - 2.9531 1.00 2658 161 0.2639 0.3088 REMARK 3 5 2.9531 - 2.7415 1.00 2660 149 0.2743 0.3049 REMARK 3 6 2.7415 - 2.5799 1.00 2636 156 0.2730 0.3049 REMARK 3 7 2.5799 - 2.4507 0.99 2645 150 0.3064 0.3684 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 49.50 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2828 REMARK 3 ANGLE : 0.936 3838 REMARK 3 CHIRALITY : 0.051 424 REMARK 3 PLANARITY : 0.004 480 REMARK 3 DIHEDRAL : 16.969 1652 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3865 24.0492 48.0946 REMARK 3 T TENSOR REMARK 3 T11: 0.7898 T22: 0.3535 REMARK 3 T33: 0.5127 T12: -0.0793 REMARK 3 T13: -0.0588 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 2.5810 L22: 1.4847 REMARK 3 L33: 4.9234 L12: -0.6020 REMARK 3 L13: 0.6167 L23: -0.5286 REMARK 3 S TENSOR REMARK 3 S11: 0.0156 S12: -0.0756 S13: -0.0502 REMARK 3 S21: -0.0037 S22: -0.1398 S23: -0.1798 REMARK 3 S31: -1.0188 S32: 0.2573 S33: 0.0260 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2191 23.7226 37.1850 REMARK 3 T TENSOR REMARK 3 T11: 0.7733 T22: 0.3314 REMARK 3 T33: 0.5112 T12: 0.0045 REMARK 3 T13: -0.0529 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 2.3664 L22: 1.4608 REMARK 3 L33: 3.9400 L12: -0.1859 REMARK 3 L13: 0.1245 L23: -0.1843 REMARK 3 S TENSOR REMARK 3 S11: 0.1040 S12: 0.2466 S13: 0.0420 REMARK 3 S21: -0.2366 S22: -0.0627 S23: 0.2817 REMARK 3 S31: -0.9649 S32: -0.2300 S33: -0.0189 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 222 THROUGH 273 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1864 17.8888 62.5828 REMARK 3 T TENSOR REMARK 3 T11: 0.6753 T22: 0.9977 REMARK 3 T33: 0.6252 T12: -0.4004 REMARK 3 T13: 0.0222 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 0.9894 L22: 0.3546 REMARK 3 L33: 4.6535 L12: 0.0180 REMARK 3 L13: 1.2395 L23: -0.1290 REMARK 3 S TENSOR REMARK 3 S11: -0.1300 S12: 0.1559 S13: 0.1657 REMARK 3 S21: 0.1248 S22: -0.1343 S23: -0.2727 REMARK 3 S31: -0.9117 S32: 1.4009 S33: 0.0787 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 274 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8917 23.5470 40.7949 REMARK 3 T TENSOR REMARK 3 T11: 0.8393 T22: 0.9068 REMARK 3 T33: 0.5609 T12: -0.4661 REMARK 3 T13: 0.0771 T23: 0.0446 REMARK 3 L TENSOR REMARK 3 L11: 2.3214 L22: 1.5263 REMARK 3 L33: 3.1889 L12: -0.3410 REMARK 3 L13: 1.1012 L23: 0.3690 REMARK 3 S TENSOR REMARK 3 S11: -0.0058 S12: 0.2851 S13: 0.3918 REMARK 3 S21: -0.2251 S22: -0.1605 S23: -0.2586 REMARK 3 S31: -1.2429 S32: 1.2995 S33: 0.1130 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 351 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9547 15.4217 48.7409 REMARK 3 T TENSOR REMARK 3 T11: 0.6220 T22: 1.2643 REMARK 3 T33: 0.6183 T12: -0.2876 REMARK 3 T13: 0.0588 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 2.5470 L22: 1.2915 REMARK 3 L33: 3.4029 L12: -0.4671 REMARK 3 L13: 0.6049 L23: -0.1299 REMARK 3 S TENSOR REMARK 3 S11: -0.1077 S12: 0.2546 S13: 0.4084 REMARK 3 S21: -0.2103 S22: 0.2146 S23: -0.6025 REMARK 3 S31: -0.5929 S32: 2.0517 S33: 0.0134 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 376 THROUGH 408 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3433 7.9439 48.1685 REMARK 3 T TENSOR REMARK 3 T11: 0.4362 T22: 0.8277 REMARK 3 T33: 0.5434 T12: -0.0949 REMARK 3 T13: 0.0348 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 3.1341 L22: 2.4608 REMARK 3 L33: 3.8092 L12: 0.3430 REMARK 3 L13: 1.1488 L23: 0.1244 REMARK 3 S TENSOR REMARK 3 S11: -0.0512 S12: -0.1820 S13: -0.3215 REMARK 3 S21: -0.1251 S22: -0.0357 S23: -0.4237 REMARK 3 S31: -0.0560 S32: 1.4468 S33: -0.0978 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5G02 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1290066182. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19847 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 45.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 1.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: STARTING MODEL GENERATED BY BALBES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG20000, 100MM LICL,100MM MES REMARK 280 PH6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 73.99700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.72219 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 42.56333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 73.99700 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 42.72219 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 42.56333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 73.99700 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 42.72219 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 42.56333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 73.99700 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 42.72219 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 42.56333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 73.99700 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 42.72219 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 42.56333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 73.99700 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 42.72219 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 42.56333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 85.44438 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 85.12667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 85.44438 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 85.12667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 85.44438 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 85.12667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 85.44438 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 85.12667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 85.44438 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 85.12667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 85.44438 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 85.12667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 74340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 127.69000 REMARK 350 BIOMT1 4 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 127.69000 REMARK 350 BIOMT1 5 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 127.69000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 LI LI A1411 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2001 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 68 REMARK 465 GLU A 69 REMARK 465 ASP A 70 REMARK 465 MET A 71 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 338 O HOH A 2014 2.11 REMARK 500 O GLY A 340 O HOH A 2016 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 176 71.42 -106.22 REMARK 500 LEU A 195 -47.21 73.95 REMARK 500 GLU A 198 -13.00 83.84 REMARK 500 ALA A 232 71.11 -154.70 REMARK 500 VAL A 240 -56.90 -120.56 REMARK 500 ASN A 245 47.63 -146.00 REMARK 500 LYS A 349 -136.02 49.82 REMARK 500 MET A 406 81.28 -151.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 LI A1411 LI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2001 O REMARK 620 2 HOH A2001 O 0.0 REMARK 620 3 HOH A2001 O 0.0 0.0 REMARK 620 4 ASP A 73 OD2 54.7 54.7 54.7 REMARK 620 5 ASP A 73 OD2 54.7 54.7 54.7 89.9 REMARK 620 6 ASP A 73 OD2 54.7 54.7 54.7 89.9 89.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SFG A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LI A 1411 REMARK 999 REMARK 999 SEQUENCE REMARK 999 CRYSTALLIZED PRMT2 SEQUENCE STARTS AT T68. DBREF 5G02 A 68 408 UNP A1L1Q4 A1L1Q4_DANRE 68 408 SEQRES 1 A 341 THR GLU ASP MET GLU ASP ALA TRP GLN ASP ASP GLU TYR SEQRES 2 A 341 PHE GLY ASN TYR GLY THR LEU ARG LEU HIS LEU GLU MET SEQRES 3 A 341 LEU SER ASP LYS PRO ARG THR GLU THR TYR ARG GLN VAL SEQRES 4 A 341 ILE LEU SER ASN SER ALA ALA LEU ARG GLU LYS VAL VAL SEQRES 5 A 341 LEU ASP LEU GLY CYS GLY THR GLY VAL ILE SER LEU PHE SEQRES 6 A 341 CYS ALA LEU LEU ALA LYS PRO ALA GLY VAL TYR ALA VAL SEQRES 7 A 341 GLU ALA SER SER MET ALA GLU HIS THR GLU GLU LEU VAL SEQRES 8 A 341 LYS GLN ASN GLY CYS ASP GLY VAL VAL THR VAL PHE GLN SEQRES 9 A 341 GLU ARG ALA GLU ASN LEU THR LEU PRO THR LYS VAL ASP SEQRES 10 A 341 VAL LEU VAL SER GLU TRP MET GLY ASN CYS LEU LEU PHE SEQRES 11 A 341 GLU TYR MET LEU GLU SER VAL LEU LEU ALA ARG ASP ARG SEQRES 12 A 341 TRP LEU LYS LYS GLY GLY MET MET TRP PRO SER SER ALA SEQRES 13 A 341 CYS LEU THR ILE VAL PRO CYS GLN ALA PHE SER ASP TYR SEQRES 14 A 341 ARG GLN LYS VAL GLU PHE TRP GLU ASN PRO TYR GLY LEU SEQRES 15 A 341 ASN PHE SER TYR LEU GLN SER LEU ALA GLN LYS GLU PHE SEQRES 16 A 341 LEU SER LYS PRO LYS PHE SER HIS HIS LEU GLN PRO GLU SEQRES 17 A 341 ASP CYS LEU SER THR PRO ALA ASP VAL ILE THR LEU ASP SEQRES 18 A 341 MET VAL THR ILE GLN VAL SER ASP LEU GLU ARG LEU LYS SEQRES 19 A 341 GLY GLU PHE THR PHE THR VAL GLU LYS SER GLY MET PHE SEQRES 20 A 341 HIS GLY PHE THR VAL TRP PHE SER ALA HIS PHE GLN CYS SEQRES 21 A 341 LEU GLU GLU ASP GLY PRO SER ILE GLU LEU ASN THR GLY SEQRES 22 A 341 PRO TYR SER GLU ILE THR HIS TRP LYS GLN THR LEU PHE SEQRES 23 A 341 MET LEU ASP ALA PRO VAL SER VAL GLU GLU GLY ASP ILE SEQRES 24 A 341 ILE ALA GLY SER ILE ARG LEU GLN ARG ASN PRO ILE TRP SEQRES 25 A 341 ARG ARG HIS LEU SER ILE THR PHE LEU TRP ASN ILE ASN SEQRES 26 A 341 SER THR GLU VAL SER THR VAL LYS THR LYS CYS PHE PRO SEQRES 27 A 341 MET TRP ARG HET SFG A 410 27 HET MES A 414 12 HET MES A 415 12 HET EDO A1409 4 HET EDO A1410 4 HET LI A1411 1 HETNAM SFG SINEFUNGIN HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM LI LITHIUM ION HETSYN SFG ADENOSYL-ORNITHINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SFG C15 H23 N7 O5 FORMUL 3 MES 2(C6 H13 N O4 S) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 LI LI 1+ FORMUL 8 HOH *16(H2 O) HELIX 1 1 GLN A 76 GLY A 85 1 10 HELIX 2 2 THR A 86 ASP A 96 1 11 HELIX 3 3 ASP A 96 ASN A 110 1 15 HELIX 4 4 SER A 111 ARG A 115 5 5 HELIX 5 5 GLY A 127 ALA A 137 1 11 HELIX 6 6 MET A 150 ASN A 161 1 12 HELIX 7 7 TYR A 199 TRP A 211 1 13 HELIX 8 8 ALA A 232 VAL A 240 1 9 HELIX 9 9 GLU A 241 ASN A 245 5 5 HELIX 10 10 ASN A 245 LEU A 249 5 5 HELIX 11 11 PHE A 251 TYR A 253 5 3 HELIX 12 12 LEU A 254 LEU A 263 1 10 HELIX 13 13 GLN A 273 ASP A 276 5 4 HELIX 14 14 GLN A 293 LEU A 297 5 5 HELIX 15 15 GLU A 395 VAL A 399 5 5 SHEET 1 AA 5 VAL A 167 PHE A 170 0 SHEET 2 AA 5 GLY A 141 VAL A 145 1 O VAL A 142 N THR A 168 SHEET 3 AA 5 VAL A 118 LEU A 122 1 O VAL A 119 N TYR A 143 SHEET 4 AA 5 VAL A 183 SER A 188 1 N ASP A 184 O VAL A 118 SHEET 5 AA 5 LEU A 212 TRP A 219 1 N LYS A 213 O VAL A 183 SHEET 1 AB 4 LYS A 267 HIS A 270 0 SHEET 2 AB 4 GLN A 350 VAL A 361 -1 O GLN A 350 N HIS A 270 SHEET 3 AB 4 GLY A 312 PHE A 325 -1 O GLY A 312 N VAL A 361 SHEET 4 AB 4 ILE A 335 ASN A 338 -1 O ILE A 335 N PHE A 325 SHEET 1 AC 5 LYS A 267 HIS A 270 0 SHEET 2 AC 5 GLN A 350 VAL A 361 -1 O GLN A 350 N HIS A 270 SHEET 3 AC 5 GLY A 312 PHE A 325 -1 O GLY A 312 N VAL A 361 SHEET 4 AC 5 SER A 222 CYS A 230 -1 O SER A 222 N HIS A 324 SHEET 5 AC 5 ALA A 282 ASP A 288 -1 O ALA A 282 N ILE A 227 SHEET 1 AD 2 ILE A 335 ASN A 338 0 SHEET 2 AD 2 GLY A 312 PHE A 325 -1 O ALA A 323 N LEU A 337 SHEET 1 AE 4 ARG A 299 THR A 307 0 SHEET 2 AE 4 ILE A 366 ARG A 375 -1 O ILE A 367 N PHE A 306 SHEET 3 AE 4 LEU A 383 ILE A 391 -1 O SER A 384 N GLN A 374 SHEET 4 AE 4 LYS A 400 MET A 406 -1 O LYS A 400 N TRP A 389 LINK LI LI A1411 O HOH A2001 1555 1555 2.22 LINK LI LI A1411 O HOH A2001 1555 2555 2.22 LINK LI LI A1411 O HOH A2001 1555 3555 2.22 LINK LI LI A1411 OD2 ASP A 73 1555 3555 2.17 LINK LI LI A1411 OD2 ASP A 73 1555 2555 2.17 LINK LI LI A1411 OD2 ASP A 73 1555 1555 2.17 CISPEP 1 TRP A 219 PRO A 220 0 1.67 CISPEP 2 MET A 406 TRP A 407 0 -2.03 SITE 1 AC1 18 TYR A 80 PHE A 81 TYR A 84 MET A 93 SITE 2 AC1 18 ARG A 99 GLY A 123 CYS A 124 VAL A 128 SITE 3 AC1 18 ILE A 129 GLU A 146 ALA A 147 GLU A 172 SITE 4 AC1 18 ARG A 173 ALA A 174 GLU A 175 GLU A 189 SITE 5 AC1 18 MET A 200 SER A 203 SITE 1 AC2 8 ASN A 83 TYR A 84 LEU A 89 GLY A 192 SITE 2 AC2 8 ASN A 193 PHE A 197 GLU A 198 TRP A 348 SITE 1 AC3 6 GLN A 76 GLU A 79 TYR A 80 GLU A 198 SITE 2 AC3 6 HIS A 382 ARG A 408 SITE 1 AC4 1 GLN A 259 SITE 1 AC5 2 THR A 286 ILE A 292 SITE 1 AC6 2 ASP A 73 HOH A2001 CRYST1 147.994 147.994 127.690 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006757 0.003901 0.000000 0.00000 SCALE2 0.000000 0.007802 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007831 0.00000