HEADER SIGNALING PROTEIN 25-MAR-16 5G1E TITLE THE COMPLEX STRUCTURE OF SYNTENIN-1 PDZ DOMAIN WITH C-TERMINAL TITLE 2 EXTENSION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNTENIN-1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SYNDECAN-BINDING PROTEIN 1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.LEE,H.KIM,J.H.YUN,W.LEE REVDAT 3 12-JUL-17 5G1E 1 REVDAT 2 29-MAR-17 5G1E 1 REMARK REVDAT 1 23-NOV-16 5G1E 0 JRNL AUTH Y.CHOI,J.H.YUN,J.YOO,H.KIM,I.LEE,H.N.SON,I.S.KIM,H.S.YOON, JRNL AUTH 2 P.ZIMMERMANN,J.R.COUCHMAN,H.S.CHO,E.S.OH,W.LEE JRNL TITL NEW STRUCTURAL INSIGHT OF C-TERMINAL REGION OF SYNTENIN-1, JRNL TITL 2 ENHANCING THE MOLECULAR DIMERIZATION AND INHIBITORY FUNCTION JRNL TITL 3 RELATED ON SYNDECAN-4 SIGNALING. JRNL REF SCI.REP. V. 6 36818 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27830760 JRNL DOI 10.1038/SREP36818 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 24829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1288 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1462 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2550 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 147 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.202 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.183 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.323 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.912 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.870 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2593 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2603 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3488 ; 1.708 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5967 ; 0.872 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 6.546 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;39.144 ;24.364 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 482 ;17.279 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.117 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 414 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2904 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 588 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1327 ; 2.871 ; 2.691 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1326 ; 2.842 ; 2.691 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1650 ; 4.040 ; 4.014 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1266 ; 3.911 ; 3.201 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 5G1E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1290066596. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97952 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27216 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 41.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS (PH 6.5), 25% (W/V) REMARK 280 POLYETHYLENE GLYCOL 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.37000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.81000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.65900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.81000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.37000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.65900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 100 REMARK 465 SER A 101 REMARK 465 ALA A 102 REMARK 465 MET A 103 REMARK 465 ALA A 104 REMARK 465 ASP A 105 REMARK 465 ILE A 106 REMARK 465 GLY A 107 REMARK 465 ALA A 108 REMARK 465 GLU A 109 REMARK 465 ILE A 110 REMARK 465 LYS A 111 REMARK 465 GLN A 112 REMARK 465 LYS A 282 REMARK 465 ARG A 283 REMARK 465 MET A 284 REMARK 465 ALA A 285 REMARK 465 PRO A 286 REMARK 465 SER A 287 REMARK 465 ILE A 288 REMARK 465 MET A 289 REMARK 465 LYS A 290 REMARK 465 SER A 291 REMARK 465 LEU A 292 REMARK 465 MET A 293 REMARK 465 ASP A 294 REMARK 465 HIS A 295 REMARK 465 THR A 296 REMARK 465 ILE A 297 REMARK 465 PRO A 298 REMARK 465 GLU A 299 REMARK 465 VAL A 300 REMARK 465 GLY B 100 REMARK 465 SER B 101 REMARK 465 ALA B 102 REMARK 465 MET B 103 REMARK 465 ALA B 104 REMARK 465 ASP B 105 REMARK 465 ILE B 106 REMARK 465 GLY B 107 REMARK 465 ALA B 108 REMARK 465 GLU B 109 REMARK 465 ILE B 110 REMARK 465 LYS B 111 REMARK 465 GLY B 185 REMARK 465 GLU B 186 REMARK 465 LYS B 187 REMARK 465 GLY B 245 REMARK 465 ALA B 263 REMARK 465 GLY B 264 REMARK 465 LYS B 282 REMARK 465 ARG B 283 REMARK 465 MET B 284 REMARK 465 ALA B 285 REMARK 465 PRO B 286 REMARK 465 SER B 287 REMARK 465 ILE B 288 REMARK 465 MET B 289 REMARK 465 LYS B 290 REMARK 465 SER B 291 REMARK 465 LEU B 292 REMARK 465 MET B 293 REMARK 465 ASP B 294 REMARK 465 HIS B 295 REMARK 465 THR B 296 REMARK 465 ILE B 297 REMARK 465 PRO B 298 REMARK 465 GLU B 299 REMARK 465 VAL B 300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 155 O HOH B 2019 2.04 REMARK 500 O ASN B 244 O HOH B 2058 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 120 CA - C - N ANGL. DEV. = 13.7 DEGREES REMARK 500 CYS A 120 O - C - N ANGL. DEV. = -15.0 DEGREES REMARK 500 ARG A 199 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 195 64.66 26.93 REMARK 500 SER A 207 85.45 -66.64 REMARK 500 SER A 208 -22.83 158.56 REMARK 500 VAL A 211 -54.88 76.34 REMARK 500 SER A 217 56.04 39.13 REMARK 500 GLN A 246 129.13 175.27 REMARK 500 THR A 262 92.01 -58.18 REMARK 500 THR A 265 -64.88 72.02 REMARK 500 ALA B 183 105.95 -40.37 REMARK 500 ARG B 195 61.74 34.44 REMARK 500 ASP B 206 175.05 -49.61 REMARK 500 VAL B 211 -48.57 86.02 REMARK 500 ILE B 243 -58.60 -121.21 REMARK 500 VAL B 248 -2.22 -142.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2006 DISTANCE = 8.92 ANGSTROMS REMARK 525 HOH B2061 DISTANCE = 7.70 ANGSTROMS REMARK 525 HOH B2062 DISTANCE = 7.74 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5G1D RELATED DB: PDB REMARK 900 THE COMPLEX STRUCTURE OF SYNTENIN-1 PDZ DOMAIN WITH C-TERMINAL REMARK 900 EXTENSION DBREF 5G1E A 108 300 UNP Q9JI92 SDCB1_RAT 108 300 DBREF 5G1E B 108 300 UNP Q9JI92 SDCB1_RAT 108 300 SEQADV 5G1E GLY A 100 UNP Q9JI92 EXPRESSION TAG SEQADV 5G1E SER A 101 UNP Q9JI92 EXPRESSION TAG SEQADV 5G1E ALA A 102 UNP Q9JI92 EXPRESSION TAG SEQADV 5G1E MET A 103 UNP Q9JI92 EXPRESSION TAG SEQADV 5G1E ALA A 104 UNP Q9JI92 EXPRESSION TAG SEQADV 5G1E ASP A 105 UNP Q9JI92 EXPRESSION TAG SEQADV 5G1E ILE A 106 UNP Q9JI92 EXPRESSION TAG SEQADV 5G1E GLY A 107 UNP Q9JI92 EXPRESSION TAG SEQADV 5G1E GLY B 100 UNP Q9JI92 EXPRESSION TAG SEQADV 5G1E SER B 101 UNP Q9JI92 EXPRESSION TAG SEQADV 5G1E ALA B 102 UNP Q9JI92 EXPRESSION TAG SEQADV 5G1E MET B 103 UNP Q9JI92 EXPRESSION TAG SEQADV 5G1E ALA B 104 UNP Q9JI92 EXPRESSION TAG SEQADV 5G1E ASP B 105 UNP Q9JI92 EXPRESSION TAG SEQADV 5G1E ILE B 106 UNP Q9JI92 EXPRESSION TAG SEQADV 5G1E GLY B 107 UNP Q9JI92 EXPRESSION TAG SEQRES 1 A 201 GLY SER ALA MET ALA ASP ILE GLY ALA GLU ILE LYS GLN SEQRES 2 A 201 GLY ILE ARG GLU VAL ILE LEU CYS LYS ASP GLN ASP GLY SEQRES 3 A 201 LYS ILE GLY LEU ARG LEU LYS SER VAL ASP ASN GLY ILE SEQRES 4 A 201 PHE VAL GLN LEU VAL GLN ALA ASN SER PRO ALA SER LEU SEQRES 5 A 201 VAL GLY LEU ARG PHE GLY ASP GLN VAL LEU GLN ILE ASN SEQRES 6 A 201 GLY GLU ASN CYS ALA GLY TRP SER SER ASP LYS ALA HIS SEQRES 7 A 201 LYS VAL LEU LYS GLN ALA PHE GLY GLU LYS ILE THR MET SEQRES 8 A 201 THR ILE ARG ASP ARG PRO PHE GLU ARG THR VAL THR MET SEQRES 9 A 201 HIS LYS ASP SER SER GLY HIS VAL GLY PHE ILE PHE LYS SEQRES 10 A 201 SER GLY LYS ILE THR SER ILE VAL LYS ASP SER SER ALA SEQRES 11 A 201 ALA ARG ASN GLY LEU LEU THR ASP HIS HIS ILE CYS GLU SEQRES 12 A 201 ILE ASN GLY GLN ASN VAL ILE GLY LEU LYS ASP ALA GLN SEQRES 13 A 201 ILE ALA ASP ILE LEU SER THR ALA GLY THR VAL VAL THR SEQRES 14 A 201 ILE THR ILE MET PRO ALA PHE ILE PHE GLU HIS ILE ILE SEQRES 15 A 201 LYS ARG MET ALA PRO SER ILE MET LYS SER LEU MET ASP SEQRES 16 A 201 HIS THR ILE PRO GLU VAL SEQRES 1 B 201 GLY SER ALA MET ALA ASP ILE GLY ALA GLU ILE LYS GLN SEQRES 2 B 201 GLY ILE ARG GLU VAL ILE LEU CYS LYS ASP GLN ASP GLY SEQRES 3 B 201 LYS ILE GLY LEU ARG LEU LYS SER VAL ASP ASN GLY ILE SEQRES 4 B 201 PHE VAL GLN LEU VAL GLN ALA ASN SER PRO ALA SER LEU SEQRES 5 B 201 VAL GLY LEU ARG PHE GLY ASP GLN VAL LEU GLN ILE ASN SEQRES 6 B 201 GLY GLU ASN CYS ALA GLY TRP SER SER ASP LYS ALA HIS SEQRES 7 B 201 LYS VAL LEU LYS GLN ALA PHE GLY GLU LYS ILE THR MET SEQRES 8 B 201 THR ILE ARG ASP ARG PRO PHE GLU ARG THR VAL THR MET SEQRES 9 B 201 HIS LYS ASP SER SER GLY HIS VAL GLY PHE ILE PHE LYS SEQRES 10 B 201 SER GLY LYS ILE THR SER ILE VAL LYS ASP SER SER ALA SEQRES 11 B 201 ALA ARG ASN GLY LEU LEU THR ASP HIS HIS ILE CYS GLU SEQRES 12 B 201 ILE ASN GLY GLN ASN VAL ILE GLY LEU LYS ASP ALA GLN SEQRES 13 B 201 ILE ALA ASP ILE LEU SER THR ALA GLY THR VAL VAL THR SEQRES 14 B 201 ILE THR ILE MET PRO ALA PHE ILE PHE GLU HIS ILE ILE SEQRES 15 B 201 LYS ARG MET ALA PRO SER ILE MET LYS SER LEU MET ASP SEQRES 16 B 201 HIS THR ILE PRO GLU VAL FORMUL 3 HOH *147(H2 O) HELIX 1 1 SER A 147 VAL A 152 1 6 HELIX 2 2 SER A 172 GLN A 182 1 11 HELIX 3 3 SER A 227 ASN A 232 1 6 HELIX 4 4 LYS A 252 THR A 262 1 11 HELIX 5 5 ALA A 274 ILE A 281 1 8 HELIX 6 6 SER B 147 VAL B 152 1 6 HELIX 7 7 SER B 172 ALA B 183 1 12 HELIX 8 8 SER B 227 ASN B 232 1 6 HELIX 9 9 LYS B 252 THR B 262 1 11 HELIX 10 10 ALA B 274 ILE B 281 1 8 SHEET 1 AA 4 ILE A 114 CYS A 120 0 SHEET 2 AA 4 LYS A 187 ARG A 193 -1 O ILE A 188 N LEU A 119 SHEET 3 AA 4 GLN A 159 ILE A 163 -1 O GLN A 159 N ARG A 193 SHEET 4 AA 4 GLU A 166 ASN A 167 -1 O GLU A 166 N ILE A 163 SHEET 1 AB 2 LEU A 129 VAL A 134 0 SHEET 2 AB 2 GLY A 137 VAL A 143 -1 O GLY A 137 N VAL A 134 SHEET 1 AC 5 ARG A 199 HIS A 204 0 SHEET 2 AC 5 VAL A 266 PRO A 273 -1 O VAL A 267 N MET A 203 SHEET 3 AC 5 HIS A 238 ILE A 243 -1 O HIS A 239 N MET A 272 SHEET 4 AC 5 LYS A 219 ILE A 223 -1 N ILE A 220 O HIS A 238 SHEET 5 AC 5 PHE A 213 LYS A 216 -1 O ILE A 214 N THR A 221 SHEET 1 BA 4 ARG B 115 ILE B 118 0 SHEET 2 BA 4 THR B 189 ARG B 193 -1 O MET B 190 N VAL B 117 SHEET 3 BA 4 GLN B 159 ILE B 163 -1 O GLN B 159 N ARG B 193 SHEET 4 BA 4 GLU B 166 ASN B 167 -1 O GLU B 166 N ILE B 163 SHEET 1 BB 5 ARG B 115 ILE B 118 0 SHEET 2 BB 5 THR B 189 ARG B 193 -1 O MET B 190 N VAL B 117 SHEET 3 BB 5 GLN B 159 ILE B 163 -1 O GLN B 159 N ARG B 193 SHEET 4 BB 5 GLY B 137 VAL B 143 -1 O ILE B 138 N VAL B 160 SHEET 5 BB 5 LEU B 129 VAL B 134 -1 O ARG B 130 N GLN B 141 SHEET 1 BC 2 GLU B 166 ASN B 167 0 SHEET 2 BC 2 GLN B 159 ILE B 163 -1 O ILE B 163 N GLU B 166 SHEET 1 BD 5 ARG B 199 HIS B 204 0 SHEET 2 BD 5 VAL B 266 PRO B 273 -1 O VAL B 267 N MET B 203 SHEET 3 BD 5 HIS B 238 GLU B 242 -1 O HIS B 239 N MET B 272 SHEET 4 BD 5 LYS B 219 ILE B 223 -1 N ILE B 220 O HIS B 238 SHEET 5 BD 5 PHE B 213 LYS B 216 -1 O ILE B 214 N THR B 221 CRYST1 52.740 63.318 103.620 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018961 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015793 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009651 0.00000