HEADER ISOMERASE 28-MAR-16 5G1K TITLE A TRIPLE MUTANT OF DSBG ENGINEERED FOR DENITROSYLATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL DISULFIDE INTERCHANGE PROTEIN DSBG; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS ISOMERASE, S-(DE)NITROSYLATION, TRX FAMILY, CXXC MOTIF, DSBG EXPDTA X-RAY DIFFRACTION AUTHOR V.TAMU DUFE,I.VAN MOLLE,C.LAFAYE,K.WAHNI,A.BOUDIER,P.LEROY, AUTHOR 2 J.F.COLLET,J.MESSENS REVDAT 4 10-JAN-24 5G1K 1 REMARK REVDAT 3 27-JUL-16 5G1K 1 JRNL REVDAT 2 08-JUN-16 5G1K 1 JRNL REMARK REVDAT 1 25-MAY-16 5G1K 0 JRNL AUTH C.LAFAYE,I.VAN MOLLE,V.TAMU DUFE,K.WAHNI,A.BOUDIER,P.LEROY, JRNL AUTH 2 J.COLLET,J.MESSENS JRNL TITL SULFUR DENITROSYLATION BY AN ENGINEERED TRX-LIKE DSBG ENZYME JRNL TITL 2 IDENTIFIES NUCLEOPHILIC CYSTEINE HYDROGEN BONDS AS KEY JRNL TITL 3 FUNCTIONAL DETERMINANT. JRNL REF J.BIOL.CHEM. V. 291 15020 2016 JRNL REFN ISSN 0021-9258 JRNL PMID 27226614 JRNL DOI 10.1074/JBC.M116.729426 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 40638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4063 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8824 - 6.0164 0.98 1306 145 0.1901 0.1969 REMARK 3 2 6.0164 - 4.7774 0.99 1284 142 0.1871 0.2167 REMARK 3 3 4.7774 - 4.1741 0.99 1261 140 0.1727 0.2276 REMARK 3 4 4.1741 - 3.7927 0.98 1264 140 0.1638 0.2038 REMARK 3 5 3.7927 - 3.5210 0.98 1271 141 0.1794 0.2088 REMARK 3 6 3.5210 - 3.3135 0.99 1256 140 0.1755 0.2210 REMARK 3 7 3.3135 - 3.1476 0.99 1244 138 0.1987 0.2569 REMARK 3 8 3.1476 - 3.0106 0.99 1265 141 0.1954 0.2778 REMARK 3 9 3.0106 - 2.8948 0.99 1267 141 0.2017 0.2406 REMARK 3 10 2.8948 - 2.7949 0.99 1253 139 0.2041 0.2556 REMARK 3 11 2.7949 - 2.7075 1.00 1254 139 0.2077 0.2684 REMARK 3 12 2.7075 - 2.6301 0.99 1285 143 0.2108 0.2600 REMARK 3 13 2.6301 - 2.5609 1.00 1250 139 0.2097 0.2733 REMARK 3 14 2.5609 - 2.4984 1.00 1253 139 0.2160 0.2848 REMARK 3 15 2.4984 - 2.4416 1.00 1285 143 0.1961 0.2536 REMARK 3 16 2.4416 - 2.3897 0.99 1232 137 0.1991 0.2760 REMARK 3 17 2.3897 - 2.3419 1.00 1267 140 0.2057 0.2677 REMARK 3 18 2.3419 - 2.2977 1.00 1249 139 0.1948 0.2446 REMARK 3 19 2.2977 - 2.2567 1.00 1269 141 0.1946 0.2594 REMARK 3 20 2.2567 - 2.2184 0.99 1264 141 0.1885 0.2396 REMARK 3 21 2.2184 - 2.1826 1.00 1257 139 0.1883 0.2493 REMARK 3 22 2.1826 - 2.1490 1.00 1256 140 0.1999 0.2482 REMARK 3 23 2.1490 - 2.1174 1.00 1242 138 0.1977 0.2800 REMARK 3 24 2.1174 - 2.0876 1.00 1288 143 0.1986 0.2765 REMARK 3 25 2.0876 - 2.0594 1.00 1241 138 0.2122 0.2684 REMARK 3 26 2.0594 - 2.0327 1.00 1247 138 0.2096 0.2667 REMARK 3 27 2.0327 - 2.0072 1.00 1297 144 0.2192 0.3009 REMARK 3 28 2.0072 - 1.9831 1.00 1250 139 0.2161 0.2726 REMARK 3 29 1.9831 - 1.9600 1.00 1218 136 0.2146 0.2591 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3662 REMARK 3 ANGLE : 0.900 5018 REMARK 3 CHIRALITY : 0.060 554 REMARK 3 PLANARITY : 0.008 655 REMARK 3 DIHEDRAL : 14.693 2222 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 57.7015 35.8010 19.0719 REMARK 3 T TENSOR REMARK 3 T11: 0.2324 T22: 0.2241 REMARK 3 T33: 0.2162 T12: -0.0146 REMARK 3 T13: 0.0058 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.4227 L22: 0.2126 REMARK 3 L33: -0.1485 L12: 0.3037 REMARK 3 L13: 0.1346 L23: 0.0972 REMARK 3 S TENSOR REMARK 3 S11: 0.0131 S12: 0.0678 S13: 0.0431 REMARK 3 S21: 0.0248 S22: 0.0063 S23: 0.0180 REMARK 3 S31: -0.0057 S32: 0.0316 S33: -0.0194 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5G1K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1290066608. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98011 REMARK 200 MONOCHROMATOR : CHANNEL CUT CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL REMARK 200 OPTICS : KIRKPATRICK-BAEZ PAIR OF BI REMARK 200 -MORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40638 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 46.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1V57 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE PH 3.75, 0.2 M REMARK 280 AMMONIUM SULFATE, 20% PEG 4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.46000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.61000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.46000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.61000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 LEU A -15 REMARK 465 LYS A -14 REMARK 465 LYS A -13 REMARK 465 ILE A -12 REMARK 465 LEU A -11 REMARK 465 LEU A -10 REMARK 465 LEU A -9 REMARK 465 ALA A -8 REMARK 465 LEU A -7 REMARK 465 LEU A -6 REMARK 465 PRO A -5 REMARK 465 ALA A -4 REMARK 465 ILE A -3 REMARK 465 ALA A -2 REMARK 465 PHE A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 231 REMARK 465 THR A 232 REMARK 465 ARG A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 HIS A 236 REMARK 465 HIS A 237 REMARK 465 HIS A 238 REMARK 465 HIS A 239 REMARK 465 MET B -16 REMARK 465 LEU B -15 REMARK 465 LYS B -14 REMARK 465 LYS B -13 REMARK 465 ILE B -12 REMARK 465 LEU B -11 REMARK 465 LEU B -10 REMARK 465 LEU B -9 REMARK 465 ALA B -8 REMARK 465 LEU B -7 REMARK 465 LEU B -6 REMARK 465 PRO B -5 REMARK 465 ALA B -4 REMARK 465 ILE B -3 REMARK 465 ALA B -2 REMARK 465 PHE B -1 REMARK 465 ALA B 0 REMARK 465 GLU B 1 REMARK 465 LYS B 231 REMARK 465 THR B 232 REMARK 465 ARG B 233 REMARK 465 HIS B 234 REMARK 465 HIS B 235 REMARK 465 HIS B 236 REMARK 465 HIS B 237 REMARK 465 HIS B 238 REMARK 465 HIS B 239 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 8 CD CE NZ REMARK 470 LYS A 12 CD CE NZ REMARK 470 LYS A 28 CD CE NZ REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 LYS A 94 CD CE NZ REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 LYS A 153 CD CE NZ REMARK 470 LYS A 157 CE NZ REMARK 470 LYS A 168 CD CE NZ REMARK 470 LYS A 208 CG CD CE NZ REMARK 470 LYS B 8 CD CE NZ REMARK 470 LYS B 28 CD CE NZ REMARK 470 LYS B 48 CD CE NZ REMARK 470 LYS B 59 CD CE NZ REMARK 470 LYS B 70 CE NZ REMARK 470 ARG B 78 CD NE CZ NH1 NH2 REMARK 470 GLN B 82 CG CD OE1 NE2 REMARK 470 ARG B 83 CD NE CZ NH1 NH2 REMARK 470 LYS B 94 CD CE NZ REMARK 470 LYS B 95 CG CD CE NZ REMARK 470 LYS B 153 CD CE NZ REMARK 470 GLU B 180 CG CD OE1 OE2 REMARK 470 LYS B 183 CE NZ REMARK 470 SER B 186 OG REMARK 470 LYS B 190 CG CD CE NZ REMARK 470 ASN B 198 CG OD1 ND2 REMARK 470 LYS B 208 CG CD CE NZ REMARK 470 GLU B 209 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2010 O HOH B 2128 2.06 REMARK 500 O PRO B 45 O HOH B 2025 2.11 REMARK 500 OE1 GLN B 214 O HOH B 2125 2.12 REMARK 500 O HOH A 2009 O HOH B 2042 2.12 REMARK 500 O HOH B 2035 O HOH B 2037 2.13 REMARK 500 O HOH A 2172 O HOH A 2174 2.14 REMARK 500 O HOH B 2020 O HOH B 2050 2.16 REMARK 500 O HOH B 2027 O HOH B 2078 2.17 REMARK 500 O HOH A 2065 O HOH A 2174 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2141 O HOH A 2154 2655 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 35 -111.09 46.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2059 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH B2017 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH B2040 DISTANCE = 6.83 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1232 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5G1L RELATED DB: PDB REMARK 900 A DOUBLE MUTANT OF DSBG ENGINEERED FOR DENITROSYLATION REMARK 999 REMARK 999 SEQUENCE REMARK 999 P110G, Y111P AND T200M MUTATIONS DBREF 5G1K A -16 231 UNP P77202 DSBG_ECOLI 1 248 DBREF 5G1K B -16 231 UNP P77202 DSBG_ECOLI 1 248 SEQADV 5G1K THR A 232 UNP P77202 EXPRESSION TAG SEQADV 5G1K ARG A 233 UNP P77202 EXPRESSION TAG SEQADV 5G1K HIS A 234 UNP P77202 EXPRESSION TAG SEQADV 5G1K HIS A 235 UNP P77202 EXPRESSION TAG SEQADV 5G1K HIS A 236 UNP P77202 EXPRESSION TAG SEQADV 5G1K HIS A 237 UNP P77202 EXPRESSION TAG SEQADV 5G1K HIS A 238 UNP P77202 EXPRESSION TAG SEQADV 5G1K HIS A 239 UNP P77202 EXPRESSION TAG SEQADV 5G1K GLY A 110 UNP P77202 PRO 127 ENGINEERED MUTATION SEQADV 5G1K PRO A 111 UNP P77202 TYR 128 ENGINEERED MUTATION SEQADV 5G1K MET A 200 UNP P77202 THR 217 ENGINEERED MUTATION SEQADV 5G1K THR B 232 UNP P77202 EXPRESSION TAG SEQADV 5G1K ARG B 233 UNP P77202 EXPRESSION TAG SEQADV 5G1K HIS B 234 UNP P77202 EXPRESSION TAG SEQADV 5G1K HIS B 235 UNP P77202 EXPRESSION TAG SEQADV 5G1K HIS B 236 UNP P77202 EXPRESSION TAG SEQADV 5G1K HIS B 237 UNP P77202 EXPRESSION TAG SEQADV 5G1K HIS B 238 UNP P77202 EXPRESSION TAG SEQADV 5G1K HIS B 239 UNP P77202 EXPRESSION TAG SEQADV 5G1K GLY B 110 UNP P77202 PRO 127 ENGINEERED MUTATION SEQADV 5G1K PRO B 111 UNP P77202 TYR 128 ENGINEERED MUTATION SEQADV 5G1K MET B 200 UNP P77202 THR 217 ENGINEERED MUTATION SEQRES 1 A 256 MET LEU LYS LYS ILE LEU LEU LEU ALA LEU LEU PRO ALA SEQRES 2 A 256 ILE ALA PHE ALA GLU GLU LEU PRO ALA PRO VAL LYS ALA SEQRES 3 A 256 ILE GLU LYS GLN GLY ILE THR ILE ILE LYS THR PHE ASP SEQRES 4 A 256 ALA PRO GLY GLY MET LYS GLY TYR LEU GLY LYS TYR GLN SEQRES 5 A 256 ASP MET GLY VAL THR ILE TYR LEU THR PRO ASP GLY LYS SEQRES 6 A 256 HIS ALA ILE SER GLY TYR MET TYR ASN GLU LYS GLY GLU SEQRES 7 A 256 ASN LEU SER ASN THR LEU ILE GLU LYS GLU ILE TYR ALA SEQRES 8 A 256 PRO ALA GLY ARG GLU MET TRP GLN ARG MET GLU GLN SER SEQRES 9 A 256 HIS TRP LEU LEU ASP GLY LYS LYS ASP ALA PRO VAL ILE SEQRES 10 A 256 VAL TYR VAL PHE ALA ASP PRO PHE CYS GLY PRO CYS LYS SEQRES 11 A 256 GLN PHE TRP GLN GLN ALA ARG PRO TRP VAL ASP SER GLY SEQRES 12 A 256 LYS VAL GLN LEU ARG THR LEU LEU VAL GLY VAL ILE LYS SEQRES 13 A 256 PRO GLU SER PRO ALA THR ALA ALA ALA ILE LEU ALA SER SEQRES 14 A 256 LYS ASP PRO ALA LYS THR TRP GLN GLN TYR GLU ALA SER SEQRES 15 A 256 GLY GLY LYS LEU LYS LEU ASN VAL PRO ALA ASN VAL SER SEQRES 16 A 256 THR GLU GLN MET LYS VAL LEU SER ASP ASN GLU LYS LEU SEQRES 17 A 256 MET ASP ASP LEU GLY ALA ASN VAL MET PRO ALA ILE TYR SEQRES 18 A 256 TYR MET SER LYS GLU ASN THR LEU GLN GLN ALA VAL GLY SEQRES 19 A 256 LEU PRO ASP GLN LYS THR LEU ASN ILE ILE MET GLY ASN SEQRES 20 A 256 LYS THR ARG HIS HIS HIS HIS HIS HIS SEQRES 1 B 256 MET LEU LYS LYS ILE LEU LEU LEU ALA LEU LEU PRO ALA SEQRES 2 B 256 ILE ALA PHE ALA GLU GLU LEU PRO ALA PRO VAL LYS ALA SEQRES 3 B 256 ILE GLU LYS GLN GLY ILE THR ILE ILE LYS THR PHE ASP SEQRES 4 B 256 ALA PRO GLY GLY MET LYS GLY TYR LEU GLY LYS TYR GLN SEQRES 5 B 256 ASP MET GLY VAL THR ILE TYR LEU THR PRO ASP GLY LYS SEQRES 6 B 256 HIS ALA ILE SER GLY TYR MET TYR ASN GLU LYS GLY GLU SEQRES 7 B 256 ASN LEU SER ASN THR LEU ILE GLU LYS GLU ILE TYR ALA SEQRES 8 B 256 PRO ALA GLY ARG GLU MET TRP GLN ARG MET GLU GLN SER SEQRES 9 B 256 HIS TRP LEU LEU ASP GLY LYS LYS ASP ALA PRO VAL ILE SEQRES 10 B 256 VAL TYR VAL PHE ALA ASP PRO PHE CYS GLY PRO CYS LYS SEQRES 11 B 256 GLN PHE TRP GLN GLN ALA ARG PRO TRP VAL ASP SER GLY SEQRES 12 B 256 LYS VAL GLN LEU ARG THR LEU LEU VAL GLY VAL ILE LYS SEQRES 13 B 256 PRO GLU SER PRO ALA THR ALA ALA ALA ILE LEU ALA SER SEQRES 14 B 256 LYS ASP PRO ALA LYS THR TRP GLN GLN TYR GLU ALA SER SEQRES 15 B 256 GLY GLY LYS LEU LYS LEU ASN VAL PRO ALA ASN VAL SER SEQRES 16 B 256 THR GLU GLN MET LYS VAL LEU SER ASP ASN GLU LYS LEU SEQRES 17 B 256 MET ASP ASP LEU GLY ALA ASN VAL MET PRO ALA ILE TYR SEQRES 18 B 256 TYR MET SER LYS GLU ASN THR LEU GLN GLN ALA VAL GLY SEQRES 19 B 256 LEU PRO ASP GLN LYS THR LEU ASN ILE ILE MET GLY ASN SEQRES 20 B 256 LYS THR ARG HIS HIS HIS HIS HIS HIS HET SO4 A1231 5 HET SO4 B1231 5 HET SO4 B1232 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *313(H2 O) HELIX 1 1 PRO A 4 LYS A 12 1 9 HELIX 2 2 ASN A 62 ILE A 72 1 11 HELIX 3 3 TYR A 73 GLN A 86 1 14 HELIX 4 4 CYS A 109 SER A 125 1 17 HELIX 5 5 GLU A 141 SER A 152 1 12 HELIX 6 6 ASP A 154 SER A 165 1 12 HELIX 7 7 SER A 178 GLY A 196 1 19 HELIX 8 8 ASP A 220 MET A 228 1 9 HELIX 9 9 PRO B 4 LYS B 12 1 9 HELIX 10 10 ASN B 62 ILE B 72 1 11 HELIX 11 11 TYR B 73 GLN B 86 1 14 HELIX 12 12 CYS B 109 ASP B 124 1 16 HELIX 13 13 GLU B 141 SER B 152 1 12 HELIX 14 14 ASP B 154 SER B 165 1 12 HELIX 15 15 SER B 178 GLY B 196 1 19 HELIX 16 16 ASP B 220 MET B 228 1 9 SHEET 1 AA 4 ILE A 15 ASP A 22 0 SHEET 2 AA 4 LYS A 28 TYR A 34 -1 O GLY A 29 N PHE A 21 SHEET 3 AA 4 MET A 37 LEU A 43 -1 O MET A 37 N TYR A 34 SHEET 4 AA 4 ALA A 50 SER A 52 -1 O ILE A 51 N TYR A 42 SHEET 1 AB 5 LEU A 90 ASP A 92 0 SHEET 2 AB 5 VAL A 128 LEU A 134 -1 O LEU A 130 N ASP A 92 SHEET 3 AB 5 VAL A 99 ALA A 105 1 O VAL A 99 N GLN A 129 SHEET 4 AB 5 ALA A 202 MET A 206 -1 O ALA A 202 N PHE A 104 SHEET 5 AB 5 LEU A 212 VAL A 216 -1 O GLN A 213 N TYR A 205 SHEET 1 BA 4 THR B 16 ASP B 22 0 SHEET 2 BA 4 LYS B 28 TYR B 34 -1 O GLY B 29 N PHE B 21 SHEET 3 BA 4 MET B 37 LEU B 43 -1 O MET B 37 N TYR B 34 SHEET 4 BA 4 ALA B 50 SER B 52 -1 O ILE B 51 N TYR B 42 SHEET 1 BB 5 LEU B 90 ASP B 92 0 SHEET 2 BB 5 VAL B 128 LEU B 134 -1 O LEU B 130 N ASP B 92 SHEET 3 BB 5 VAL B 99 ALA B 105 1 O VAL B 99 N GLN B 129 SHEET 4 BB 5 ALA B 202 MET B 206 -1 O ALA B 202 N PHE B 104 SHEET 5 BB 5 LEU B 212 VAL B 216 -1 O GLN B 213 N TYR B 205 SSBOND 1 CYS A 109 CYS A 112 1555 1555 2.03 SSBOND 2 CYS B 109 CYS B 112 1555 1555 2.03 CISPEP 1 MET A 200 PRO A 201 0 -6.35 CISPEP 2 MET B 200 PRO B 201 0 -4.99 SITE 1 AC1 5 SER A 152 LYS A 153 HOH A2134 HOH A2135 SITE 2 AC1 5 LYS B 170 SITE 1 AC2 3 LYS A 170 SER B 152 LYS B 153 SITE 1 AC3 3 HIS B 49 ASN B 57 LEU B 63 CRYST1 116.920 57.220 86.040 90.00 94.75 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008553 0.000000 0.000711 0.00000 SCALE2 0.000000 0.017476 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011663 0.00000