HEADER ISOMERASE 28-MAR-16 5G1L TITLE A DOUBLE MUTANT OF DSBG ENGINEERED FOR DENITROSYLATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL DISULFIDE INTERCHANGE PROTEIN DSBG; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ISOMERASE, S-(DE)NITROSYLATION, TRX FAMILY, CXXC MOTIF, DSBG EXPDTA X-RAY DIFFRACTION AUTHOR V.TAMU DUFE,I.VAN MOLLE,C.LAFAYE,K.WAHNI,A.BOUDIER,P.LEROY, AUTHOR 2 J.F.COLLET,J.MESSENS REVDAT 4 10-JAN-24 5G1L 1 REMARK REVDAT 3 27-JUL-16 5G1L 1 JRNL REVDAT 2 08-JUN-16 5G1L 1 JRNL REVDAT 1 25-MAY-16 5G1L 0 JRNL AUTH C.LAFAYE,I.VAN MOLLE,V.TAMU DUFE,K.WAHNI,A.BOUDIER,P.LEROY, JRNL AUTH 2 J.COLLET,J.MESSENS JRNL TITL SULFUR DENITROSYLATION BY AN ENGINEERED TRX-LIKE DSBG ENZYME JRNL TITL 2 IDENTIFIES NUCLEOPHILIC CYSTEINE HYDROGEN BONDS AS KEY JRNL TITL 3 FUNCTIONAL DETERMINANT. JRNL REF J.BIOL.CHEM. V. 291 15020 2016 JRNL REFN ISSN 0021-9258 JRNL PMID 27226614 JRNL DOI 10.1074/JBC.M116.729426 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 61466 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6147 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.1515 - 5.2793 0.99 1918 214 0.1696 0.1747 REMARK 3 2 5.2793 - 4.1914 0.99 1886 209 0.1385 0.1673 REMARK 3 3 4.1914 - 3.6619 0.99 1854 207 0.1382 0.1516 REMARK 3 4 3.6619 - 3.3272 1.00 1854 205 0.1492 0.1657 REMARK 3 5 3.3272 - 3.0888 1.00 1857 207 0.1698 0.1888 REMARK 3 6 3.0888 - 2.9068 0.99 1860 207 0.1793 0.1988 REMARK 3 7 2.9068 - 2.7612 1.00 1855 206 0.1751 0.2052 REMARK 3 8 2.7612 - 2.6410 1.00 1840 204 0.1752 0.2055 REMARK 3 9 2.6410 - 2.5394 1.00 1854 206 0.1740 0.2001 REMARK 3 10 2.5394 - 2.4518 1.00 1837 204 0.1710 0.2002 REMARK 3 11 2.4518 - 2.3751 1.00 1836 204 0.1686 0.2112 REMARK 3 12 2.3751 - 2.3072 1.00 1858 207 0.1693 0.1978 REMARK 3 13 2.3072 - 2.2465 1.00 1841 204 0.1619 0.1889 REMARK 3 14 2.2465 - 2.1917 1.00 1831 204 0.1568 0.1743 REMARK 3 15 2.1917 - 2.1419 1.00 1853 205 0.1672 0.1898 REMARK 3 16 2.1419 - 2.0963 1.00 1841 205 0.1771 0.2041 REMARK 3 17 2.0963 - 2.0543 1.00 1867 207 0.1846 0.2157 REMARK 3 18 2.0543 - 2.0156 1.00 1821 203 0.1747 0.2028 REMARK 3 19 2.0156 - 1.9796 1.00 1840 204 0.1715 0.2082 REMARK 3 20 1.9796 - 1.9460 1.00 1846 205 0.1726 0.2003 REMARK 3 21 1.9460 - 1.9146 1.00 1841 205 0.1807 0.2333 REMARK 3 22 1.9146 - 1.8852 1.00 1857 206 0.1874 0.2138 REMARK 3 23 1.8852 - 1.8574 1.00 1825 203 0.1865 0.2044 REMARK 3 24 1.8574 - 1.8313 1.00 1852 206 0.1969 0.2564 REMARK 3 25 1.8313 - 1.8065 1.00 1815 202 0.2061 0.2035 REMARK 3 26 1.8065 - 1.7831 1.00 1864 207 0.2081 0.2514 REMARK 3 27 1.7831 - 1.7608 1.00 1849 205 0.2115 0.2466 REMARK 3 28 1.7608 - 1.7396 1.00 1806 201 0.2309 0.2551 REMARK 3 29 1.7396 - 1.7193 1.00 1812 201 0.2389 0.2804 REMARK 3 30 1.7193 - 1.7000 0.93 1749 194 0.2435 0.2788 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3756 REMARK 3 ANGLE : 0.956 5147 REMARK 3 CHIRALITY : 0.065 566 REMARK 3 PLANARITY : 0.008 672 REMARK 3 DIHEDRAL : 10.389 2287 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 57.3098 35.5353 18.8667 REMARK 3 T TENSOR REMARK 3 T11: 0.1678 T22: 0.1671 REMARK 3 T33: 0.1701 T12: -0.0002 REMARK 3 T13: 0.0072 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.3595 L22: 0.1877 REMARK 3 L33: 0.0213 L12: 0.2096 REMARK 3 L13: 0.0884 L23: 0.0620 REMARK 3 S TENSOR REMARK 3 S11: 0.0217 S12: 0.0174 S13: 0.0408 REMARK 3 S21: 0.0148 S22: -0.0186 S23: 0.0187 REMARK 3 S31: -0.0082 S32: -0.0008 S33: -0.0035 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5G1L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1290066609. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98011 REMARK 200 MONOCHROMATOR : CHANNEL CUT CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL REMARK 200 OPTICS : KIRKPATRICK-BAEZ PAIR OF BI REMARK 200 -MORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61466 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 46.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.75 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1V57 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE PH 3.75, 0.2 M REMARK 280 AMMONIUM SULFATE, 20% PEG 4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.32500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.51500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.32500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.51500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -134.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 108.98561 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 85.20598 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2224 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 LEU A -15 REMARK 465 LYS A -14 REMARK 465 LYS A -13 REMARK 465 ILE A -12 REMARK 465 LEU A -11 REMARK 465 LEU A -10 REMARK 465 LEU A -9 REMARK 465 ALA A -8 REMARK 465 LEU A -7 REMARK 465 LEU A -6 REMARK 465 PRO A -5 REMARK 465 ALA A -4 REMARK 465 ILE A -3 REMARK 465 ALA A -2 REMARK 465 PHE A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 231 REMARK 465 THR A 232 REMARK 465 ARG A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 HIS A 236 REMARK 465 HIS A 237 REMARK 465 HIS A 238 REMARK 465 HIS A 239 REMARK 465 MET B -16 REMARK 465 LEU B -15 REMARK 465 LYS B -14 REMARK 465 LYS B -13 REMARK 465 ILE B -12 REMARK 465 LEU B -11 REMARK 465 LEU B -10 REMARK 465 LEU B -9 REMARK 465 ALA B -8 REMARK 465 LEU B -7 REMARK 465 LEU B -6 REMARK 465 PRO B -5 REMARK 465 ALA B -4 REMARK 465 ILE B -3 REMARK 465 ALA B -2 REMARK 465 PHE B -1 REMARK 465 ALA B 0 REMARK 465 GLU B 1 REMARK 465 GLU B 2 REMARK 465 LYS B 231 REMARK 465 THR B 232 REMARK 465 ARG B 233 REMARK 465 HIS B 234 REMARK 465 HIS B 235 REMARK 465 HIS B 236 REMARK 465 HIS B 237 REMARK 465 HIS B 238 REMARK 465 HIS B 239 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 8 CD CE NZ REMARK 470 LYS A 28 CD CE NZ REMARK 470 LYS A 48 CE NZ REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 ARG A 78 CD NE CZ NH1 NH2 REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 LYS A 157 CE NZ REMARK 470 LYS A 168 CE NZ REMARK 470 LYS A 208 CG CD CE NZ REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 LYS B 8 CD CE NZ REMARK 470 LYS B 48 CE NZ REMARK 470 LYS B 59 CE NZ REMARK 470 ARG B 83 NE CZ NH1 NH2 REMARK 470 LYS B 95 CD CE NZ REMARK 470 LYS B 153 CG CD CE NZ REMARK 470 LYS B 168 CD CE NZ REMARK 470 GLU B 180 CG CD OE1 OE2 REMARK 470 ASN B 198 CG OD1 ND2 REMARK 470 LYS B 208 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2254 O HOH B 2011 2.06 REMARK 500 O HOH A 2084 O HOH A 2187 2.12 REMARK 500 O HOH A 2084 O HOH A 2085 2.14 REMARK 500 O HOH A 2112 O HOH A 2165 2.18 REMARK 500 OD1 ASN A 65 O HOH A 2086 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2195 O HOH B 2149 2645 2.14 REMARK 500 O HOH A 2084 O HOH B 2134 3445 2.15 REMARK 500 O HOH A 2135 O HOH B 2146 3445 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 45 CA - N - CD ANGL. DEV. = -8.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 35 -119.50 48.51 REMARK 500 GLN B 35 55.96 34.81 REMARK 500 PRO B 45 100.48 40.47 REMARK 500 PHE B 108 48.24 -105.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 46 GLY B 47 123.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2071 DISTANCE = 5.96 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1232 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5G1K RELATED DB: PDB REMARK 900 A TRIPLE MUTANT OF DSBG ENGINEERED FOR DENITROSYLATION REMARK 999 REMARK 999 SEQUENCE REMARK 999 P110G, Y111P MUTATIONS DBREF 5G1L A -16 231 UNP P77202 DSBG_ECOLI 1 248 DBREF 5G1L B -16 231 UNP P77202 DSBG_ECOLI 1 248 SEQADV 5G1L THR A 232 UNP P77202 EXPRESSION TAG SEQADV 5G1L ARG A 233 UNP P77202 EXPRESSION TAG SEQADV 5G1L HIS A 234 UNP P77202 EXPRESSION TAG SEQADV 5G1L HIS A 235 UNP P77202 EXPRESSION TAG SEQADV 5G1L HIS A 236 UNP P77202 EXPRESSION TAG SEQADV 5G1L HIS A 237 UNP P77202 EXPRESSION TAG SEQADV 5G1L HIS A 238 UNP P77202 EXPRESSION TAG SEQADV 5G1L HIS A 239 UNP P77202 EXPRESSION TAG SEQADV 5G1L GLY A 110 UNP P77202 PRO 127 ENGINEERED MUTATION SEQADV 5G1L PRO A 111 UNP P77202 TYR 128 ENGINEERED MUTATION SEQADV 5G1L THR B 232 UNP P77202 EXPRESSION TAG SEQADV 5G1L ARG B 233 UNP P77202 EXPRESSION TAG SEQADV 5G1L HIS B 234 UNP P77202 EXPRESSION TAG SEQADV 5G1L HIS B 235 UNP P77202 EXPRESSION TAG SEQADV 5G1L HIS B 236 UNP P77202 EXPRESSION TAG SEQADV 5G1L HIS B 237 UNP P77202 EXPRESSION TAG SEQADV 5G1L HIS B 238 UNP P77202 EXPRESSION TAG SEQADV 5G1L HIS B 239 UNP P77202 EXPRESSION TAG SEQADV 5G1L GLY B 110 UNP P77202 PRO 127 ENGINEERED MUTATION SEQADV 5G1L PRO B 111 UNP P77202 TYR 128 ENGINEERED MUTATION SEQRES 1 A 256 MET LEU LYS LYS ILE LEU LEU LEU ALA LEU LEU PRO ALA SEQRES 2 A 256 ILE ALA PHE ALA GLU GLU LEU PRO ALA PRO VAL LYS ALA SEQRES 3 A 256 ILE GLU LYS GLN GLY ILE THR ILE ILE LYS THR PHE ASP SEQRES 4 A 256 ALA PRO GLY GLY MET LYS GLY TYR LEU GLY LYS TYR GLN SEQRES 5 A 256 ASP MET GLY VAL THR ILE TYR LEU THR PRO ASP GLY LYS SEQRES 6 A 256 HIS ALA ILE SER GLY TYR MET TYR ASN GLU LYS GLY GLU SEQRES 7 A 256 ASN LEU SER ASN THR LEU ILE GLU LYS GLU ILE TYR ALA SEQRES 8 A 256 PRO ALA GLY ARG GLU MET TRP GLN ARG MET GLU GLN SER SEQRES 9 A 256 HIS TRP LEU LEU ASP GLY LYS LYS ASP ALA PRO VAL ILE SEQRES 10 A 256 VAL TYR VAL PHE ALA ASP PRO PHE CYS GLY PRO CYS LYS SEQRES 11 A 256 GLN PHE TRP GLN GLN ALA ARG PRO TRP VAL ASP SER GLY SEQRES 12 A 256 LYS VAL GLN LEU ARG THR LEU LEU VAL GLY VAL ILE LYS SEQRES 13 A 256 PRO GLU SER PRO ALA THR ALA ALA ALA ILE LEU ALA SER SEQRES 14 A 256 LYS ASP PRO ALA LYS THR TRP GLN GLN TYR GLU ALA SER SEQRES 15 A 256 GLY GLY LYS LEU LYS LEU ASN VAL PRO ALA ASN VAL SER SEQRES 16 A 256 THR GLU GLN MET LYS VAL LEU SER ASP ASN GLU LYS LEU SEQRES 17 A 256 MET ASP ASP LEU GLY ALA ASN VAL THR PRO ALA ILE TYR SEQRES 18 A 256 TYR MET SER LYS GLU ASN THR LEU GLN GLN ALA VAL GLY SEQRES 19 A 256 LEU PRO ASP GLN LYS THR LEU ASN ILE ILE MET GLY ASN SEQRES 20 A 256 LYS THR ARG HIS HIS HIS HIS HIS HIS SEQRES 1 B 256 MET LEU LYS LYS ILE LEU LEU LEU ALA LEU LEU PRO ALA SEQRES 2 B 256 ILE ALA PHE ALA GLU GLU LEU PRO ALA PRO VAL LYS ALA SEQRES 3 B 256 ILE GLU LYS GLN GLY ILE THR ILE ILE LYS THR PHE ASP SEQRES 4 B 256 ALA PRO GLY GLY MET LYS GLY TYR LEU GLY LYS TYR GLN SEQRES 5 B 256 ASP MET GLY VAL THR ILE TYR LEU THR PRO ASP GLY LYS SEQRES 6 B 256 HIS ALA ILE SER GLY TYR MET TYR ASN GLU LYS GLY GLU SEQRES 7 B 256 ASN LEU SER ASN THR LEU ILE GLU LYS GLU ILE TYR ALA SEQRES 8 B 256 PRO ALA GLY ARG GLU MET TRP GLN ARG MET GLU GLN SER SEQRES 9 B 256 HIS TRP LEU LEU ASP GLY LYS LYS ASP ALA PRO VAL ILE SEQRES 10 B 256 VAL TYR VAL PHE ALA ASP PRO PHE CYS GLY PRO CYS LYS SEQRES 11 B 256 GLN PHE TRP GLN GLN ALA ARG PRO TRP VAL ASP SER GLY SEQRES 12 B 256 LYS VAL GLN LEU ARG THR LEU LEU VAL GLY VAL ILE LYS SEQRES 13 B 256 PRO GLU SER PRO ALA THR ALA ALA ALA ILE LEU ALA SER SEQRES 14 B 256 LYS ASP PRO ALA LYS THR TRP GLN GLN TYR GLU ALA SER SEQRES 15 B 256 GLY GLY LYS LEU LYS LEU ASN VAL PRO ALA ASN VAL SER SEQRES 16 B 256 THR GLU GLN MET LYS VAL LEU SER ASP ASN GLU LYS LEU SEQRES 17 B 256 MET ASP ASP LEU GLY ALA ASN VAL THR PRO ALA ILE TYR SEQRES 18 B 256 TYR MET SER LYS GLU ASN THR LEU GLN GLN ALA VAL GLY SEQRES 19 B 256 LEU PRO ASP GLN LYS THR LEU ASN ILE ILE MET GLY ASN SEQRES 20 B 256 LYS THR ARG HIS HIS HIS HIS HIS HIS HET SO4 A1231 5 HET SO4 A1232 5 HET SO4 B1231 5 HET SO4 B1232 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *459(H2 O) HELIX 1 1 PRO A 4 LYS A 12 1 9 HELIX 2 2 ASN A 62 ILE A 72 1 11 HELIX 3 3 ALA A 74 ALA A 76 5 3 HELIX 4 4 GLY A 77 GLN A 86 1 10 HELIX 5 5 CYS A 109 ALA A 119 1 11 HELIX 6 6 ALA A 119 SER A 125 1 7 HELIX 7 7 GLU A 141 SER A 152 1 12 HELIX 8 8 ASP A 154 SER A 165 1 12 HELIX 9 9 SER A 178 GLY A 196 1 19 HELIX 10 10 ASP A 220 MET A 228 1 9 HELIX 11 11 PRO B 4 LYS B 12 1 9 HELIX 12 12 ASN B 62 ILE B 72 1 11 HELIX 13 13 TYR B 73 GLN B 86 1 14 HELIX 14 14 CYS B 109 ASP B 124 1 16 HELIX 15 15 GLU B 141 SER B 152 1 12 HELIX 16 16 ASP B 154 SER B 165 1 12 HELIX 17 17 SER B 178 GLY B 196 1 19 HELIX 18 18 ASP B 220 MET B 228 1 9 SHEET 1 A 4 ILE A 15 ASP A 22 0 SHEET 2 A 4 LYS A 28 TYR A 34 -1 O LEU A 31 N ILE A 18 SHEET 3 A 4 MET A 37 LEU A 43 -1 O MET A 37 N TYR A 34 SHEET 4 A 4 ALA A 50 SER A 52 -1 O ILE A 51 N TYR A 42 SHEET 1 B 5 LEU A 90 ASP A 92 0 SHEET 2 B 5 VAL A 128 LEU A 134 -1 O LEU A 130 N ASP A 92 SHEET 3 B 5 VAL A 99 ALA A 105 1 N VAL A 101 O ARG A 131 SHEET 4 B 5 ALA A 202 MET A 206 -1 O TYR A 204 N TYR A 102 SHEET 5 B 5 LEU A 212 VAL A 216 -1 O ALA A 215 N ILE A 203 SHEET 1 C 4 ILE B 15 ASP B 22 0 SHEET 2 C 4 LYS B 28 TYR B 34 -1 O LEU B 31 N ILE B 18 SHEET 3 C 4 MET B 37 LEU B 43 -1 O LEU B 43 N LYS B 28 SHEET 4 C 4 ALA B 50 SER B 52 -1 O ILE B 51 N TYR B 42 SHEET 1 D 5 LEU B 90 ASP B 92 0 SHEET 2 D 5 VAL B 128 LEU B 134 -1 O LEU B 130 N ASP B 92 SHEET 3 D 5 VAL B 99 ALA B 105 1 N VAL B 101 O ARG B 131 SHEET 4 D 5 ALA B 202 MET B 206 -1 O TYR B 204 N TYR B 102 SHEET 5 D 5 LEU B 212 VAL B 216 -1 O ALA B 215 N ILE B 203 CISPEP 1 THR A 200 PRO A 201 0 -5.28 CISPEP 2 PRO B 45 ASP B 46 0 -1.18 CISPEP 3 THR B 200 PRO B 201 0 -7.94 SITE 1 AC1 2 HIS A 49 ASN A 57 SITE 1 AC2 5 SER A 152 LYS A 153 HOH A2182 HOH A2202 SITE 2 AC2 5 LYS B 170 SITE 1 AC3 5 LYS A 170 SER B 152 LYS B 153 HOH B2129 SITE 2 AC3 5 HOH B2148 SITE 1 AC4 3 HIS B 49 ASN B 57 LEU B 63 CRYST1 116.650 57.030 85.550 90.00 95.14 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008573 0.000000 0.000771 0.00000 SCALE2 0.000000 0.017535 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011736 0.00000