HEADER CALCIUM BINDING PROTEIN 15-MAY-16 5G4P TITLE CRYSTAL STRUCTURE OF HUMAN HIPPOCALCIN AT 2.4 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURON-SPECIFIC CALCIUM-BINDING PROTEIN HIPPOCALCIN; COMPND 3 CHAIN: A, E; COMPND 4 SYNONYM: CALCIUM-BINDING PROTEIN BDR-2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HPCA, BDR2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PE-SUMO KEYWDS CALCIUM BINDING PROTEIN, CA BINDING PROTEIN, CALCIUM-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.V.ANTONYUK,N.HELASSA,L.Y.LIAN,L.P.HAYNES,R.D.BURGOYNE REVDAT 3 10-JAN-24 5G4P 1 LINK REVDAT 2 05-JUL-17 5G4P 1 JRNL REVDAT 1 03-MAY-17 5G4P 0 JRNL AUTH N.HELASSA,S.V.ANTONYUK,L.Y.LIAN,L.P.HAYNES,R.D.BURGOYNE JRNL TITL BIOPHYSICAL AND FUNCTIONAL CHARACTERIZATION OF HIPPOCALCIN JRNL TITL 2 MUTANTS RESPONSIBLE FOR HUMAN DYSTONIA. JRNL REF HUM. MOL. GENET. V. 26 2426 2017 JRNL REFN ESSN 1460-2083 JRNL PMID 28398555 JRNL DOI 10.1093/HMG/DDX133 REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 14886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 770 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1057 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.3620 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2972 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 78.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.56000 REMARK 3 B22 (A**2) : -2.56000 REMARK 3 B33 (A**2) : 8.29000 REMARK 3 B12 (A**2) : -1.28000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.573 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.308 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.370 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 36.292 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3068 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2808 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4082 ; 1.562 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6490 ; 1.044 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 366 ; 6.451 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;33.431 ;24.675 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 555 ;17.349 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;17.270 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 436 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3417 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 690 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1477 ; 2.480 ; 3.227 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1476 ; 2.481 ; 3.223 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1834 ; 3.181 ; 4.808 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1835 ; 3.180 ; 4.813 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1591 ; 3.324 ; 3.344 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1592 ; 3.323 ; 3.348 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2249 ; 2.668 ; 4.898 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 13091 ; 8.803 ;30.339 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 13092 ; 8.803 ;30.344 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A E REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 6 A 188 4 REMARK 3 1 E 6 E 188 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2815 ; 0.67 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2815 ; 4.92 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 188 REMARK 3 ORIGIN FOR THE GROUP (A): 9.7250 7.0430 0.0460 REMARK 3 T TENSOR REMARK 3 T11: 0.5843 T22: 0.7386 REMARK 3 T33: 0.0590 T12: 0.1374 REMARK 3 T13: 0.0615 T23: 0.1213 REMARK 3 L TENSOR REMARK 3 L11: 1.0505 L22: 2.8293 REMARK 3 L33: 1.8828 L12: -0.9156 REMARK 3 L13: 0.7112 L23: -0.7131 REMARK 3 S TENSOR REMARK 3 S11: 0.2286 S12: 0.2104 S13: 0.1639 REMARK 3 S21: -0.1517 S22: -0.5329 S23: -0.1593 REMARK 3 S31: -0.0296 S32: 0.4695 S33: 0.3044 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 5 E 189 REMARK 3 ORIGIN FOR THE GROUP (A): -8.8770 3.0140 -24.6300 REMARK 3 T TENSOR REMARK 3 T11: 0.7313 T22: 0.6503 REMARK 3 T33: 0.1356 T12: 0.0688 REMARK 3 T13: 0.0575 T23: -0.1092 REMARK 3 L TENSOR REMARK 3 L11: 0.9900 L22: 0.2840 REMARK 3 L33: 3.5787 L12: 0.0433 REMARK 3 L13: 0.6991 L23: 0.3551 REMARK 3 S TENSOR REMARK 3 S11: -0.4540 S12: -0.2547 S13: 0.0516 REMARK 3 S21: 0.1099 S22: -0.1596 S23: 0.1391 REMARK 3 S31: 0.0899 S32: -0.5940 S33: 0.6136 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5G4P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE. REMARK 100 THE DEPOSITION ID IS D_1290066856. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15734 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.420 REMARK 200 RESOLUTION RANGE LOW (A) : 43.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 5AEQ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE PH 5.5, 18% V/V 2-PROPANOL, 16% W/V PEG 4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.86067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 189.72133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 142.29100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 237.15167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.43033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LYS A 3 REMARK 465 GLN A 4 REMARK 465 ASN A 5 REMARK 465 ALA A 190 REMARK 465 SER A 191 REMARK 465 GLN A 192 REMARK 465 PHE A 193 REMARK 465 MET E 1 REMARK 465 GLY E 2 REMARK 465 LYS E 3 REMARK 465 GLN E 4 REMARK 465 ASN E 5 REMARK 465 SER E 6 REMARK 465 SER E 191 REMARK 465 GLN E 192 REMARK 465 PHE E 193 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CD CE NZ REMARK 470 ARG A 9 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 32 CD CE NZ REMARK 470 LYS A 63 CD CE NZ REMARK 470 GLU A 142 CG CD OE1 OE2 REMARK 470 ARG A 171 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 137 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 133 -39.53 -30.90 REMARK 500 MET A 138 164.66 65.41 REMARK 500 PRO A 139 -97.02 -66.94 REMARK 500 GLU A 140 -41.29 -170.12 REMARK 500 MET A 156 -19.08 -147.18 REMARK 500 ASP E 73 89.83 -63.49 REMARK 500 ASN E 75 -8.08 -51.34 REMARK 500 PRO E 139 156.82 -43.19 REMARK 500 GLN E 184 -9.15 -59.36 REMARK 500 ASP E 186 118.87 -30.67 REMARK 500 SER E 189 -50.23 -24.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 73 OD1 REMARK 620 2 ASN A 75 OD1 74.7 REMARK 620 3 ASP A 77 OD1 84.8 82.6 REMARK 620 4 THR A 79 O 92.1 157.1 77.5 REMARK 620 5 GLU A 84 OE1 105.6 117.4 159.0 83.8 REMARK 620 6 GLU A 84 OE2 89.4 69.3 151.8 130.3 48.4 REMARK 620 7 HOH A 301 O 160.3 91.6 107.9 105.2 67.8 72.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 109 OD1 REMARK 620 2 ASP A 111 OD1 98.4 REMARK 620 3 ASN A 113 OD1 77.6 77.5 REMARK 620 4 TYR A 115 O 75.8 153.7 76.2 REMARK 620 5 GLU A 120 OE1 99.5 135.1 146.7 71.1 REMARK 620 6 GLU A 120 OE2 96.8 87.7 163.1 118.2 49.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 157 OD1 REMARK 620 2 ASN A 159 OD1 93.3 REMARK 620 3 ASP A 161 OD1 100.1 70.9 REMARK 620 4 LYS A 163 O 78.8 139.5 71.5 REMARK 620 5 GLU A 168 OE1 87.7 107.6 172.0 111.6 REMARK 620 6 GLU A 168 OE2 131.0 83.6 124.2 131.1 48.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 73 OD1 REMARK 620 2 ASN E 75 OD1 74.0 REMARK 620 3 THR E 79 O 67.1 140.6 REMARK 620 4 GLU E 84 OE1 114.2 111.1 90.5 REMARK 620 5 GLU E 84 OE2 94.9 62.8 125.1 48.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 109 OD1 REMARK 620 2 ASP E 111 OD1 83.6 REMARK 620 3 ASN E 113 OD1 93.3 83.9 REMARK 620 4 TYR E 115 O 85.3 151.5 70.6 REMARK 620 5 GLU E 120 OE1 106.6 130.7 140.9 77.8 REMARK 620 6 GLU E 120 OE2 89.8 83.7 166.7 122.5 49.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 157 OD1 REMARK 620 2 ASN E 159 OD1 88.6 REMARK 620 3 ASP E 161 OD1 98.3 78.3 REMARK 620 4 LYS E 163 O 82.1 148.6 73.5 REMARK 620 5 GLU E 168 OE1 95.9 127.6 150.7 83.3 REMARK 620 6 GLU E 168 OE2 87.6 79.1 156.5 129.9 49.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 203 DBREF 5G4P A 1 193 UNP P84074 HPCA_HUMAN 1 193 DBREF 5G4P E 1 193 UNP P84074 HPCA_HUMAN 1 193 SEQRES 1 A 193 MET GLY LYS GLN ASN SER LYS LEU ARG PRO GLU MET LEU SEQRES 2 A 193 GLN ASP LEU ARG GLU ASN THR GLU PHE SER GLU LEU GLU SEQRES 3 A 193 LEU GLN GLU TRP TYR LYS GLY PHE LEU LYS ASP CYS PRO SEQRES 4 A 193 THR GLY ILE LEU ASN VAL ASP GLU PHE LYS LYS ILE TYR SEQRES 5 A 193 ALA ASN PHE PHE PRO TYR GLY ASP ALA SER LYS PHE ALA SEQRES 6 A 193 GLU HIS VAL PHE ARG THR PHE ASP THR ASN SER ASP GLY SEQRES 7 A 193 THR ILE ASP PHE ARG GLU PHE ILE ILE ALA LEU SER VAL SEQRES 8 A 193 THR SER ARG GLY ARG LEU GLU GLN LYS LEU MET TRP ALA SEQRES 9 A 193 PHE SER MET TYR ASP LEU ASP GLY ASN GLY TYR ILE SER SEQRES 10 A 193 ARG GLU GLU MET LEU GLU ILE VAL GLN ALA ILE TYR LYS SEQRES 11 A 193 MET VAL SER SER VAL MET LYS MET PRO GLU ASP GLU SER SEQRES 12 A 193 THR PRO GLU LYS ARG THR GLU LYS ILE PHE ARG GLN MET SEQRES 13 A 193 ASP THR ASN ASN ASP GLY LYS LEU SER LEU GLU GLU PHE SEQRES 14 A 193 ILE ARG GLY ALA LYS SER ASP PRO SER ILE VAL ARG LEU SEQRES 15 A 193 LEU GLN CYS ASP PRO SER SER ALA SER GLN PHE SEQRES 1 E 193 MET GLY LYS GLN ASN SER LYS LEU ARG PRO GLU MET LEU SEQRES 2 E 193 GLN ASP LEU ARG GLU ASN THR GLU PHE SER GLU LEU GLU SEQRES 3 E 193 LEU GLN GLU TRP TYR LYS GLY PHE LEU LYS ASP CYS PRO SEQRES 4 E 193 THR GLY ILE LEU ASN VAL ASP GLU PHE LYS LYS ILE TYR SEQRES 5 E 193 ALA ASN PHE PHE PRO TYR GLY ASP ALA SER LYS PHE ALA SEQRES 6 E 193 GLU HIS VAL PHE ARG THR PHE ASP THR ASN SER ASP GLY SEQRES 7 E 193 THR ILE ASP PHE ARG GLU PHE ILE ILE ALA LEU SER VAL SEQRES 8 E 193 THR SER ARG GLY ARG LEU GLU GLN LYS LEU MET TRP ALA SEQRES 9 E 193 PHE SER MET TYR ASP LEU ASP GLY ASN GLY TYR ILE SER SEQRES 10 E 193 ARG GLU GLU MET LEU GLU ILE VAL GLN ALA ILE TYR LYS SEQRES 11 E 193 MET VAL SER SER VAL MET LYS MET PRO GLU ASP GLU SER SEQRES 12 E 193 THR PRO GLU LYS ARG THR GLU LYS ILE PHE ARG GLN MET SEQRES 13 E 193 ASP THR ASN ASN ASP GLY LYS LEU SER LEU GLU GLU PHE SEQRES 14 E 193 ILE ARG GLY ALA LYS SER ASP PRO SER ILE VAL ARG LEU SEQRES 15 E 193 LEU GLN CYS ASP PRO SER SER ALA SER GLN PHE HET CA A 201 1 HET CA A 202 1 HET CA A 203 1 HET CA E 201 1 HET CA E 202 1 HET CA E 203 1 HETNAM CA CALCIUM ION FORMUL 3 CA 6(CA 2+) FORMUL 9 HOH *34(H2 O) HELIX 1 AA1 ARG A 9 ASN A 19 1 11 HELIX 2 AA2 SER A 23 CYS A 38 1 16 HELIX 3 AA3 VAL A 45 ASN A 54 1 10 HELIX 4 AA4 PRO A 57 ASP A 73 1 17 HELIX 5 AA5 PHE A 82 GLY A 95 1 14 HELIX 6 AA6 ARG A 96 ASP A 109 1 14 HELIX 7 AA7 ARG A 118 SER A 133 1 16 HELIX 8 AA8 THR A 144 ARG A 154 1 11 HELIX 9 AA9 SER A 165 LYS A 174 1 10 HELIX 10 AB1 ASP A 176 GLN A 184 1 9 HELIX 11 AB2 ARG E 9 THR E 20 1 12 HELIX 12 AB3 SER E 23 CYS E 38 1 16 HELIX 13 AB4 ASN E 44 ALA E 53 1 10 HELIX 14 AB5 ALA E 61 ASP E 73 1 13 HELIX 15 AB6 ASP E 81 GLY E 95 1 15 HELIX 16 AB7 ARG E 96 ASP E 109 1 14 HELIX 17 AB8 ARG E 118 SER E 133 1 16 HELIX 18 AB9 THR E 144 ASP E 157 1 14 HELIX 19 AC1 LEU E 166 LYS E 174 1 9 HELIX 20 AC2 ASP E 176 GLN E 184 1 9 HELIX 21 AC3 CYS E 185 ALA E 190 5 6 SHEET 1 AA1 2 ILE A 42 ASN A 44 0 SHEET 2 AA1 2 THR A 79 ASP A 81 -1 O ILE A 80 N LEU A 43 SHEET 1 AA2 2 ILE A 116 SER A 117 0 SHEET 2 AA2 2 LYS A 163 LEU A 164 -1 O LEU A 164 N ILE A 116 SHEET 1 AA3 2 TYR E 115 SER E 117 0 SHEET 2 AA3 2 LYS E 163 SER E 165 -1 O LEU E 164 N ILE E 116 LINK OD1 ASP A 73 CA CA A 201 1555 1555 2.33 LINK OD1 ASN A 75 CA CA A 201 1555 1555 2.45 LINK OD1 ASP A 77 CA CA A 201 1555 1555 2.34 LINK O THR A 79 CA CA A 201 1555 1555 2.19 LINK OE1 GLU A 84 CA CA A 201 1555 1555 2.44 LINK OE2 GLU A 84 CA CA A 201 1555 1555 2.82 LINK OD1 ASP A 109 CA CA A 203 1555 1555 2.34 LINK OD1 ASP A 111 CA CA A 203 1555 1555 2.33 LINK OD1 ASN A 113 CA CA A 203 1555 1555 2.46 LINK O TYR A 115 CA CA A 203 1555 1555 2.60 LINK OE1 GLU A 120 CA CA A 203 1555 1555 2.44 LINK OE2 GLU A 120 CA CA A 203 1555 1555 2.79 LINK OD1 ASP A 157 CA CA A 202 1555 1555 2.35 LINK OD1 ASN A 159 CA CA A 202 1555 1555 2.47 LINK OD1 ASP A 161 CA CA A 202 1555 1555 2.35 LINK O LYS A 163 CA CA A 202 1555 1555 2.35 LINK OE1 GLU A 168 CA CA A 202 1555 1555 2.47 LINK OE2 GLU A 168 CA CA A 202 1555 1555 2.79 LINK CA CA A 201 O HOH A 301 1555 1555 2.21 LINK OD1 ASP E 73 CA CA E 201 1555 1555 2.33 LINK OD1 ASN E 75 CA CA E 201 1555 1555 2.44 LINK O THR E 79 CA CA E 201 1555 1555 2.18 LINK OE1 GLU E 84 CA CA E 201 1555 1555 2.43 LINK OE2 GLU E 84 CA CA E 201 1555 1555 2.82 LINK OD1 ASP E 109 CA CA E 203 1555 1555 2.34 LINK OD1 ASP E 111 CA CA E 203 1555 1555 2.33 LINK OD1 ASN E 113 CA CA E 203 1555 1555 2.46 LINK O TYR E 115 CA CA E 203 1555 1555 2.60 LINK OE1 GLU E 120 CA CA E 203 1555 1555 2.44 LINK OE2 GLU E 120 CA CA E 203 1555 1555 2.79 LINK OD1 ASP E 157 CA CA E 202 1555 1555 2.31 LINK OD1 ASN E 159 CA CA E 202 1555 1555 2.49 LINK OD1 ASP E 161 CA CA E 202 1555 1555 2.33 LINK O LYS E 163 CA CA E 202 1555 1555 2.37 LINK OE1 GLU E 168 CA CA E 202 1555 1555 2.43 LINK OE2 GLU E 168 CA CA E 202 1555 1555 2.81 SITE 1 AC1 6 ASP A 73 ASN A 75 ASP A 77 THR A 79 SITE 2 AC1 6 GLU A 84 HOH A 301 SITE 1 AC2 5 ASP A 157 ASN A 159 ASP A 161 LYS A 163 SITE 2 AC2 5 GLU A 168 SITE 1 AC3 5 ASP A 109 ASP A 111 ASN A 113 TYR A 115 SITE 2 AC3 5 GLU A 120 SITE 1 AC4 5 ASP E 73 ASN E 75 ASP E 77 THR E 79 SITE 2 AC4 5 GLU E 84 SITE 1 AC5 5 ASP E 157 ASN E 159 ASP E 161 LYS E 163 SITE 2 AC5 5 GLU E 168 SITE 1 AC6 5 ASP E 109 ASP E 111 ASN E 113 TYR E 115 SITE 2 AC6 5 GLU E 120 CRYST1 50.970 50.970 284.582 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019619 0.011327 0.000000 0.00000 SCALE2 0.000000 0.022654 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003514 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.866381 0.488524 -0.103580 -1.75082 1 MTRIX2 2 -0.489584 -0.871797 -0.016675 4.80396 1 MTRIX3 2 -0.098447 0.036265 0.994481 23.27215 1