HEADER TRANSFERASE 16-AUG-16 5G6V TITLE CRYSTAL STRUCTURE OF THE PCTAIRE1 KINASE IN COMPLEX WITH INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIN-DEPENDENT KINASE 16; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN, RESIDUES 163-478; COMPND 5 SYNONYM: CDK16, CELL DIVISION PROTEIN KINASE 16, PCTAIRE-MOTIF COMPND 6 PROTEIN KINASE 1, SERINE/THREONINE-PROTEIN KINASE PCTAIRE-1; COMPND 7 EC: 2.7.11.22; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.DIXON-CLARKE,S.GALAN BARTUAL,J.ELKINS,P.SAVITSKY,J.KOPEC, AUTHOR 2 A.MACKENZIE,C.TALLANT,C.HEROVEN,N.BURGESS-BROWN,F.VON DELFT, AUTHOR 3 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,A.BULLOCK REVDAT 2 02-AUG-23 5G6V 1 JRNL REMARK REVDAT 1 23-NOV-16 5G6V 0 JRNL AUTH S.E.DIXON-CLARKE,S.N.SHEHATA,T.KROJER,T.D.SHARPE, JRNL AUTH 2 F.VON DELFT,K.SAKAMOTO,A.N.BULLOCK JRNL TITL STRUCTURE AND INHIBITOR SPECIFICITY OF THE PCTAIRE-FAMILY JRNL TITL 2 KINASE CDK16. JRNL REF BIOCHEM.J. V. 474 699 2017 JRNL REFN ESSN 1470-8728 JRNL PMID 28057719 JRNL DOI 10.1042/BCJ20160941 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 35328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1816 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2570 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4812 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 262 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.27000 REMARK 3 B22 (A**2) : 0.69000 REMARK 3 B33 (A**2) : -2.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.278 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.234 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.187 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.587 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5017 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4760 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6808 ; 1.349 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10915 ; 0.922 ; 2.987 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 606 ; 6.442 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 222 ;39.829 ;24.099 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 841 ;13.956 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;22.464 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 766 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5619 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1138 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2436 ; 2.193 ; 4.083 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2435 ; 2.192 ; 4.081 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3038 ; 3.572 ; 6.111 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2581 ; 2.145 ; 4.196 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 162 A 303 4 REMARK 3 1 B 162 B 303 4 REMARK 3 2 A 323 A 474 4 REMARK 3 2 B 323 B 474 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 4495 ; 0.63 ; 0.50 REMARK 3 MEDIUM THERMAL 1 B (A**2): 4495 ; 5.82 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 5G6V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1290066233. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91742 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37175 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 28.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG MEDIUM SMEAR (PEG 2000, PEG REMARK 280 3350, PEG 4000, PEG 5000MME) AND 0.1 M CITRATE PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 28.59500 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.12500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 28.59500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 73.12500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 312 REMARK 465 ILE A 313 REMARK 465 PRO A 314 REMARK 465 THR A 315 REMARK 465 LYS A 316 REMARK 465 SER A 475 REMARK 465 LEU A 476 REMARK 465 ARG A 477 REMARK 465 SER A 478 REMARK 465 ALA A 479 REMARK 465 HIS A 480 REMARK 465 HIS A 481 REMARK 465 HIS A 482 REMARK 465 HIS A 483 REMARK 465 HIS A 484 REMARK 465 HIS A 485 REMARK 465 LYS B 311 REMARK 465 SER B 312 REMARK 465 ILE B 313 REMARK 465 PRO B 314 REMARK 465 THR B 315 REMARK 465 LYS B 316 REMARK 465 THR B 317 REMARK 465 TYR B 318 REMARK 465 ASP B 319 REMARK 465 ASN B 320 REMARK 465 GLU B 321 REMARK 465 VAL B 322 REMARK 465 LEU B 476 REMARK 465 ARG B 477 REMARK 465 SER B 478 REMARK 465 ALA B 479 REMARK 465 HIS B 480 REMARK 465 HIS B 481 REMARK 465 HIS B 482 REMARK 465 HIS B 483 REMARK 465 HIS B 484 REMARK 465 HIS B 485 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 176 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 197 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 199 CG CD OE1 OE2 REMARK 470 HIS A 200 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 202 CG CD OE1 OE2 REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 GLU A 296 CG CD OE1 OE2 REMARK 470 ARG A 297 NE CZ NH1 NH2 REMARK 470 LYS A 311 CG CD CE NZ REMARK 470 ARG A 376 CZ NH1 NH2 REMARK 470 GLU A 384 CG CD OE1 OE2 REMARK 470 SER A 391 OG REMARK 470 GLU A 393 CG CD OE1 OE2 REMARK 470 LYS A 396 CG CD CE NZ REMARK 470 LYS A 402 CG CD CE NZ REMARK 470 ARG A 404 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 432 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 455 CE NZ REMARK 470 LYS A 466 CE NZ REMARK 470 LYS A 472 CG CD CE NZ REMARK 470 MET B 162 CG SD CE REMARK 470 LYS B 216 CE NZ REMARK 470 LYS B 219 CG CD CE NZ REMARK 470 LYS B 245 CE NZ REMARK 470 LYS B 248 CG CD CE NZ REMARK 470 GLU B 384 CD OE1 OE2 REMARK 470 LYS B 396 CG CD CE NZ REMARK 470 LYS B 402 CG CD CE NZ REMARK 470 LYS B 466 CG CD CE NZ REMARK 470 LYS B 472 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2086 O HOH A 2086 2756 1.47 REMARK 500 O HOH B 2056 O HOH B 2056 2855 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 272 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 259 122.54 -37.34 REMARK 500 ARG A 285 -5.64 78.24 REMARK 500 ASP A 286 48.36 -147.19 REMARK 500 LEU A 307 -114.33 -69.60 REMARK 500 ALA A 308 82.30 38.64 REMARK 500 TRP A 386 84.08 -159.30 REMARK 500 TYR A 398 81.82 -58.88 REMARK 500 LYS A 402 92.91 -69.35 REMARK 500 PHE A 445 -38.37 -37.73 REMARK 500 LYS A 466 -44.19 69.97 REMARK 500 GLU B 163 116.81 -179.69 REMARK 500 ASP B 286 42.90 -153.47 REMARK 500 THR B 324 -72.64 -33.08 REMARK 500 TRP B 386 78.75 -160.93 REMARK 500 ASN B 399 82.13 61.81 REMARK 500 LEU B 427 54.58 -90.01 REMARK 500 LYS B 466 -49.89 82.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 919 A 1475 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 919 B 1475 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1476 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1477 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1477 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1478 REMARK 999 REMARK 999 SEQUENCE REMARK 999 ENGINEERED S319D PHOSPHO-MIMETIC MUTATION DBREF 5G6V A 163 478 UNP Q00536 CDK16_HUMAN 163 478 DBREF 5G6V B 163 478 UNP Q00536 CDK16_HUMAN 163 478 SEQADV 5G6V MET A 162 UNP Q00536 EXPRESSION TAG SEQADV 5G6V ALA A 479 UNP Q00536 EXPRESSION TAG SEQADV 5G6V HIS A 480 UNP Q00536 EXPRESSION TAG SEQADV 5G6V HIS A 481 UNP Q00536 EXPRESSION TAG SEQADV 5G6V HIS A 482 UNP Q00536 EXPRESSION TAG SEQADV 5G6V HIS A 483 UNP Q00536 EXPRESSION TAG SEQADV 5G6V HIS A 484 UNP Q00536 EXPRESSION TAG SEQADV 5G6V HIS A 485 UNP Q00536 EXPRESSION TAG SEQADV 5G6V ASP A 319 UNP Q00536 SER 319 ENGINEERED MUTATION SEQADV 5G6V MET B 162 UNP Q00536 EXPRESSION TAG SEQADV 5G6V ALA B 479 UNP Q00536 EXPRESSION TAG SEQADV 5G6V HIS B 480 UNP Q00536 EXPRESSION TAG SEQADV 5G6V HIS B 481 UNP Q00536 EXPRESSION TAG SEQADV 5G6V HIS B 482 UNP Q00536 EXPRESSION TAG SEQADV 5G6V HIS B 483 UNP Q00536 EXPRESSION TAG SEQADV 5G6V HIS B 484 UNP Q00536 EXPRESSION TAG SEQADV 5G6V HIS B 485 UNP Q00536 EXPRESSION TAG SEQADV 5G6V ASP B 319 UNP Q00536 SER 319 ENGINEERED MUTATION SEQRES 1 A 324 MET GLU THR TYR ILE LYS LEU ASP LYS LEU GLY GLU GLY SEQRES 2 A 324 THR TYR ALA THR VAL TYR LYS GLY LYS SER LYS LEU THR SEQRES 3 A 324 ASP ASN LEU VAL ALA LEU LYS GLU ILE ARG LEU GLU HIS SEQRES 4 A 324 GLU GLU GLY ALA PRO CYS THR ALA ILE ARG GLU VAL SER SEQRES 5 A 324 LEU LEU LYS ASP LEU LYS HIS ALA ASN ILE VAL THR LEU SEQRES 6 A 324 HIS ASP ILE ILE HIS THR GLU LYS SER LEU THR LEU VAL SEQRES 7 A 324 PHE GLU TYR LEU ASP LYS ASP LEU LYS GLN TYR LEU ASP SEQRES 8 A 324 ASP CYS GLY ASN ILE ILE ASN MET HIS ASN VAL LYS LEU SEQRES 9 A 324 PHE LEU PHE GLN LEU LEU ARG GLY LEU ALA TYR CYS HIS SEQRES 10 A 324 ARG GLN LYS VAL LEU HIS ARG ASP LEU LYS PRO GLN ASN SEQRES 11 A 324 LEU LEU ILE ASN GLU ARG GLY GLU LEU LYS LEU ALA ASP SEQRES 12 A 324 PHE GLY LEU ALA ARG ALA LYS SER ILE PRO THR LYS THR SEQRES 13 A 324 TYR ASP ASN GLU VAL VAL THR LEU TRP TYR ARG PRO PRO SEQRES 14 A 324 ASP ILE LEU LEU GLY SER THR ASP TYR SER THR GLN ILE SEQRES 15 A 324 ASP MET TRP GLY VAL GLY CYS ILE PHE TYR GLU MET ALA SEQRES 16 A 324 THR GLY ARG PRO LEU PHE PRO GLY SER THR VAL GLU GLU SEQRES 17 A 324 GLN LEU HIS PHE ILE PHE ARG ILE LEU GLY THR PRO THR SEQRES 18 A 324 GLU GLU THR TRP PRO GLY ILE LEU SER ASN GLU GLU PHE SEQRES 19 A 324 LYS THR TYR ASN TYR PRO LYS TYR ARG ALA GLU ALA LEU SEQRES 20 A 324 LEU SER HIS ALA PRO ARG LEU ASP SER ASP GLY ALA ASP SEQRES 21 A 324 LEU LEU THR LYS LEU LEU GLN PHE GLU GLY ARG ASN ARG SEQRES 22 A 324 ILE SER ALA GLU ASP ALA MET LYS HIS PRO PHE PHE LEU SEQRES 23 A 324 SER LEU GLY GLU ARG ILE HIS LYS LEU PRO ASP THR THR SEQRES 24 A 324 SER ILE PHE ALA LEU LYS GLU ILE GLN LEU GLN LYS GLU SEQRES 25 A 324 ALA SER LEU ARG SER ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 324 MET GLU THR TYR ILE LYS LEU ASP LYS LEU GLY GLU GLY SEQRES 2 B 324 THR TYR ALA THR VAL TYR LYS GLY LYS SER LYS LEU THR SEQRES 3 B 324 ASP ASN LEU VAL ALA LEU LYS GLU ILE ARG LEU GLU HIS SEQRES 4 B 324 GLU GLU GLY ALA PRO CYS THR ALA ILE ARG GLU VAL SER SEQRES 5 B 324 LEU LEU LYS ASP LEU LYS HIS ALA ASN ILE VAL THR LEU SEQRES 6 B 324 HIS ASP ILE ILE HIS THR GLU LYS SER LEU THR LEU VAL SEQRES 7 B 324 PHE GLU TYR LEU ASP LYS ASP LEU LYS GLN TYR LEU ASP SEQRES 8 B 324 ASP CYS GLY ASN ILE ILE ASN MET HIS ASN VAL LYS LEU SEQRES 9 B 324 PHE LEU PHE GLN LEU LEU ARG GLY LEU ALA TYR CYS HIS SEQRES 10 B 324 ARG GLN LYS VAL LEU HIS ARG ASP LEU LYS PRO GLN ASN SEQRES 11 B 324 LEU LEU ILE ASN GLU ARG GLY GLU LEU LYS LEU ALA ASP SEQRES 12 B 324 PHE GLY LEU ALA ARG ALA LYS SER ILE PRO THR LYS THR SEQRES 13 B 324 TYR ASP ASN GLU VAL VAL THR LEU TRP TYR ARG PRO PRO SEQRES 14 B 324 ASP ILE LEU LEU GLY SER THR ASP TYR SER THR GLN ILE SEQRES 15 B 324 ASP MET TRP GLY VAL GLY CYS ILE PHE TYR GLU MET ALA SEQRES 16 B 324 THR GLY ARG PRO LEU PHE PRO GLY SER THR VAL GLU GLU SEQRES 17 B 324 GLN LEU HIS PHE ILE PHE ARG ILE LEU GLY THR PRO THR SEQRES 18 B 324 GLU GLU THR TRP PRO GLY ILE LEU SER ASN GLU GLU PHE SEQRES 19 B 324 LYS THR TYR ASN TYR PRO LYS TYR ARG ALA GLU ALA LEU SEQRES 20 B 324 LEU SER HIS ALA PRO ARG LEU ASP SER ASP GLY ALA ASP SEQRES 21 B 324 LEU LEU THR LYS LEU LEU GLN PHE GLU GLY ARG ASN ARG SEQRES 22 B 324 ILE SER ALA GLU ASP ALA MET LYS HIS PRO PHE PHE LEU SEQRES 23 B 324 SER LEU GLY GLU ARG ILE HIS LYS LEU PRO ASP THR THR SEQRES 24 B 324 SER ILE PHE ALA LEU LYS GLU ILE GLN LEU GLN LYS GLU SEQRES 25 B 324 ALA SER LEU ARG SER ALA HIS HIS HIS HIS HIS HIS HET 919 A1475 41 HET EDO A1476 4 HET EDO A1477 4 HET 919 B1475 41 HET EDO B1477 4 HET EDO B1478 4 HETNAM 919 4-[4-({[3-TERT-BUTYL-1-(QUINOLIN-6-YL)-1H-PYRAZOL-5- HETNAM 2 919 YL]CARBAMOYL}AMINO)-3-FLUOROPHENOXY]-N-METHYLPYRIDINE- HETNAM 3 919 2-CARBOXAMIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN 919 DCC-2036 HETSYN EDO ETHYLENE GLYCOL FORMUL 3 919 2(C30 H28 F N7 O3) FORMUL 4 EDO 4(C2 H6 O2) FORMUL 9 HOH *262(H2 O) HELIX 1 1 PRO A 205 LEU A 218 1 14 HELIX 2 2 LEU A 247 CYS A 254 1 8 HELIX 3 3 ASN A 259 GLN A 280 1 22 HELIX 4 4 LYS A 288 GLN A 290 5 3 HELIX 5 5 THR A 341 GLY A 358 1 18 HELIX 6 6 THR A 366 GLY A 379 1 14 HELIX 7 7 GLY A 388 SER A 391 5 4 HELIX 8 8 ASN A 392 TYR A 398 1 7 HELIX 9 9 ALA A 407 ALA A 412 1 6 HELIX 10 10 ASP A 416 LEU A 427 1 12 HELIX 11 11 GLU A 430 ARG A 434 5 5 HELIX 12 12 SER A 436 LYS A 442 1 7 HELIX 13 13 HIS A 443 GLY A 450 5 8 HELIX 14 14 GLU A 451 LEU A 456 5 6 HELIX 15 15 SER A 461 LYS A 466 5 6 HELIX 16 16 PRO B 205 LEU B 218 1 14 HELIX 17 17 LEU B 247 CYS B 254 1 8 HELIX 18 18 ASN B 259 GLN B 280 1 22 HELIX 19 19 LYS B 288 GLN B 290 5 3 HELIX 20 20 PRO B 329 LEU B 334 1 6 HELIX 21 21 THR B 341 GLY B 358 1 18 HELIX 22 22 THR B 366 GLY B 379 1 14 HELIX 23 23 GLY B 388 SER B 391 5 4 HELIX 24 24 ASN B 392 ASN B 399 1 8 HELIX 25 25 ALA B 407 ALA B 412 1 6 HELIX 26 26 ASP B 416 LEU B 427 1 12 HELIX 27 27 GLU B 430 ARG B 434 5 5 HELIX 28 28 SER B 436 LYS B 442 1 7 HELIX 29 29 HIS B 443 GLY B 450 5 8 HELIX 30 30 GLU B 451 LEU B 456 5 6 HELIX 31 31 SER B 461 LYS B 466 5 6 SHEET 1 AA 6 LEU A 226 HIS A 231 0 SHEET 2 AA 6 SER A 235 GLU A 241 -1 O THR A 237 N ILE A 230 SHEET 3 AA 6 LEU A 190 ARG A 197 -1 O ALA A 192 N PHE A 240 SHEET 4 AA 6 ALA A 177 SER A 184 -1 O THR A 178 N GLU A 195 SHEET 5 AA 6 TYR A 165 GLU A 173 -1 O ILE A 166 N LYS A 183 SHEET 6 AA 6 ARG A 309 ALA A 310 -1 O ARG A 309 N GLU A 173 SHEET 1 AB 3 LYS A 245 ASP A 246 0 SHEET 2 AB 3 LEU A 292 ILE A 294 -1 O ILE A 294 N LYS A 245 SHEET 3 AB 3 LEU A 300 LEU A 302 -1 O LYS A 301 N LEU A 293 SHEET 1 BA 5 TYR B 165 GLU B 173 0 SHEET 2 BA 5 ALA B 177 SER B 184 -1 O VAL B 179 N LEU B 171 SHEET 3 BA 5 LEU B 190 ARG B 197 -1 O VAL B 191 N GLY B 182 SHEET 4 BA 5 SER B 235 GLU B 241 -1 O LEU B 236 N ILE B 196 SHEET 5 BA 5 LEU B 226 THR B 232 -1 N HIS B 227 O VAL B 239 SHEET 1 BB 3 LYS B 245 ASP B 246 0 SHEET 2 BB 3 LEU B 292 ILE B 294 -1 O ILE B 294 N LYS B 245 SHEET 3 BB 3 LEU B 300 LEU B 302 -1 O LYS B 301 N LEU B 293 SITE 1 AC1 18 VAL A 179 ALA A 192 LYS A 194 GLU A 211 SITE 2 AC1 18 LEU A 215 LEU A 218 VAL A 224 PHE A 240 SITE 3 AC1 18 GLU A 241 TYR A 242 LEU A 243 ASP A 244 SITE 4 AC1 18 HIS A 284 ALA A 303 ASP A 304 PHE A 305 SITE 5 AC1 18 HOH A2042 HOH A2062 SITE 1 AC2 16 HOH A2022 ALA B 192 LYS B 194 THR B 207 SITE 2 AC2 16 GLU B 211 LEU B 215 LEU B 218 VAL B 224 SITE 3 AC2 16 PHE B 240 GLU B 241 TYR B 242 LEU B 243 SITE 4 AC2 16 ASP B 244 ALA B 303 ASP B 304 ARG B 309 SITE 1 AC3 8 ALA A 221 ASN A 222 GLN A 269 ARG A 272 SITE 2 AC3 8 GLU A 299 SER A 461 ILE A 462 HOH A2122 SITE 1 AC4 4 GLU B 438 MET B 441 LYS B 442 HIS B 454 SITE 1 AC5 5 VAL A 224 THR A 225 GLU A 241 LEU A 243 SITE 2 AC5 5 LYS A 301 SITE 1 AC6 5 LEU B 427 GLN B 428 PHE B 429 HOH B2108 SITE 2 AC6 5 HOH B2118 CRYST1 57.190 86.940 146.250 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017486 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011502 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006838 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.748912 -0.612520 0.252883 127.13885 1 MTRIX2 2 -0.615601 0.501814 -0.607633 76.45946 1 MTRIX3 2 0.245287 -0.610739 -0.752883 60.71938 1