HEADER SUGAR BINDING PROTEIN 16-JUN-16 5GGO TITLE CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF HUMAN PROTEIN O-MANNOSE TITLE 2 BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE IN COMPLEX WITH GALNAC- TITLE 3 BETA1,3-GLCNAC-BETA-PNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN O-LINKED-MANNOSE BETA-1,2-N- COMPND 3 ACETYLGLUCOSAMINYLTRANSFERASE 1; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: UNP RESIDUES 97-250; COMPND 6 SYNONYM: POMGNT1,UDP-GLCNAC:ALPHA-D-MANNOSIDE BETA-1,2-N- COMPND 7 ACETYLGLUCOSAMINYLTRANSFERASE I.2,GNT I.2; COMPND 8 EC: 2.4.1.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POMGNT1, MGAT1.2, UNQ746/PRO1475; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS GLYCOSYLTRANSFEREASE, O-MANNOSYLATION, ALPHA-DYSTROGLYCAN, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.KUWABARA,T.SENDA,R.KATO REVDAT 4 08-NOV-23 5GGO 1 HETSYN LINK REVDAT 3 29-JUL-20 5GGO 1 COMPND JRNL REMARK HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 31-AUG-16 5GGO 1 JRNL REVDAT 1 10-AUG-16 5GGO 0 JRNL AUTH N.KUWABARA,H.MANYA,T.YAMADA,H.TATENO,M.KANAGAWA,K.KOBAYASHI, JRNL AUTH 2 K.AKASAKA-MANYA,Y.HIROSE,M.MIZUNO,M.IKEGUCHI,T.TODA, JRNL AUTH 3 J.HIRABAYASHI,T.SENDA,T.ENDO,R.KATO JRNL TITL CARBOHYDRATE-BINDING DOMAIN OF THE POMGNT1 STEM REGION JRNL TITL 2 MODULATES O-MANNOSYLATION SITES OF ALPHA-DYSTROGLYCAN JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 9280 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 27493216 JRNL DOI 10.1073/PNAS.1525545113 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 54322 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.680 REMARK 3 FREE R VALUE TEST SET COUNT : 3808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.8313 - 4.4984 0.99 3680 146 0.1569 0.2156 REMARK 3 2 4.4984 - 3.5729 1.00 3686 138 0.1454 0.1600 REMARK 3 3 3.5729 - 3.1220 1.00 3688 141 0.1545 0.1782 REMARK 3 4 3.1220 - 2.8368 1.00 3701 142 0.1652 0.1790 REMARK 3 5 2.8368 - 2.6337 1.00 3701 135 0.1701 0.1841 REMARK 3 6 2.6337 - 2.4785 1.00 3715 144 0.1726 0.1974 REMARK 3 7 2.4785 - 2.3544 1.00 3686 141 0.1663 0.2140 REMARK 3 8 2.3544 - 2.2520 1.00 3690 144 0.1672 0.2098 REMARK 3 9 2.2520 - 2.1653 1.00 3702 145 0.1728 0.2260 REMARK 3 10 2.1653 - 2.0906 1.00 3687 140 0.1713 0.2190 REMARK 3 11 2.0906 - 2.0253 1.00 3681 142 0.1733 0.2319 REMARK 3 12 2.0253 - 1.9674 1.00 3690 141 0.1785 0.2235 REMARK 3 13 1.9674 - 1.9156 1.00 3713 147 0.1810 0.2040 REMARK 3 14 1.9156 - 1.8689 1.00 3703 138 0.1807 0.2197 REMARK 3 15 1.8689 - 1.8264 1.00 3680 142 0.1790 0.2060 REMARK 3 16 1.8264 - 1.7876 1.00 3724 139 0.1883 0.2465 REMARK 3 17 1.7876 - 1.7518 1.00 3669 141 0.1981 0.2157 REMARK 3 18 1.7518 - 1.7188 1.00 3677 137 0.1919 0.1804 REMARK 3 19 1.7188 - 1.6881 1.00 3789 144 0.2054 0.2393 REMARK 3 20 1.6881 - 1.6595 1.00 3617 137 0.2182 0.2360 REMARK 3 21 1.6595 - 1.6327 1.00 3696 141 0.2304 0.2802 REMARK 3 22 1.6327 - 1.6076 1.00 3737 142 0.2344 0.2861 REMARK 3 23 1.6076 - 1.5839 1.00 3705 146 0.2432 0.2737 REMARK 3 24 1.5839 - 1.5616 1.00 3663 138 0.2464 0.2686 REMARK 3 25 1.5616 - 1.5405 1.00 3714 143 0.2622 0.3229 REMARK 3 26 1.5405 - 1.5205 1.00 3662 137 0.2698 0.3116 REMARK 3 27 1.5205 - 1.5015 0.96 3613 137 0.2889 0.3071 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 2421 REMARK 3 ANGLE : 1.628 3292 REMARK 3 CHIRALITY : 0.082 386 REMARK 3 PLANARITY : 0.008 412 REMARK 3 DIHEDRAL : 13.103 871 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE FACTOR FILE CONTAINS REMARK 3 FRIEDEL PAIRS IN I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 5GGO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1300000742. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54584 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 45.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.90100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5GGG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL, PEG-6000, PH 8.8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 35.00800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.85250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.00800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.85250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 577 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 583 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 87 REMARK 465 PRO A 88 REMARK 465 LEU A 89 REMARK 465 GLY A 90 REMARK 465 SER A 91 REMARK 465 GLY A 92 REMARK 465 SER A 93 REMARK 465 GLY A 94 REMARK 465 PRO A 95 REMARK 465 ARG A 96 REMARK 465 GLU A 250 REMARK 465 GLY B 87 REMARK 465 PRO B 88 REMARK 465 LEU B 89 REMARK 465 GLY B 90 REMARK 465 SER B 91 REMARK 465 GLY B 92 REMARK 465 SER B 93 REMARK 465 GLY B 94 REMARK 465 PRO B 95 REMARK 465 ARG B 96 REMARK 465 ARG B 97 REMARK 465 ALA B 249 REMARK 465 GLU B 250 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 97 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 125 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 126 CG CD OE1 OE2 REMARK 470 GLN A 127 CG CD OE1 NE2 REMARK 470 ARG B 125 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 126 CG CD OE1 OE2 REMARK 470 GLN B 127 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 573 O HOH B 576 1.99 REMARK 500 O HOH A 407 O HOH A 549 2.07 REMARK 500 O HOH A 586 O HOH B 578 2.09 REMARK 500 OH TYR A 152 O HOH A 401 2.09 REMARK 500 O HOH A 553 O HOH B 500 2.13 REMARK 500 O HOH A 549 O HOH A 559 2.14 REMARK 500 O HOH A 437 O HOH A 533 2.14 REMARK 500 O HOH B 480 O HOH B 491 2.15 REMARK 500 OG1 THR A 117 O HOH A 402 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 170 C - N - CA ANGL. DEV. = -14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 155 -17.59 83.63 REMARK 500 ASP A 179 -75.94 72.19 REMARK 500 HIS B 155 -11.87 83.65 REMARK 500 ASP B 179 -72.25 73.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 586 DISTANCE = 7.22 ANGSTROMS REMARK 525 HOH B 576 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B 577 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH B 578 DISTANCE = 6.73 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GGF RELATED DB: PDB REMARK 900 RELATED ID: 5GGG RELATED DB: PDB REMARK 900 RELATED ID: 5GGI RELATED DB: PDB REMARK 900 RELATED ID: 5GGJ RELATED DB: PDB REMARK 900 RELATED ID: 5GGK RELATED DB: PDB REMARK 900 RELATED ID: 5GGL RELATED DB: PDB REMARK 900 RELATED ID: 5GGN RELATED DB: PDB REMARK 900 RELATED ID: 5GGP RELATED DB: PDB DBREF 5GGO A 92 250 UNP Q8WZA1 PMGT1_HUMAN 92 250 DBREF 5GGO B 92 250 UNP Q8WZA1 PMGT1_HUMAN 92 250 SEQADV 5GGO GLY A 87 UNP Q8WZA1 EXPRESSION TAG SEQADV 5GGO PRO A 88 UNP Q8WZA1 EXPRESSION TAG SEQADV 5GGO LEU A 89 UNP Q8WZA1 EXPRESSION TAG SEQADV 5GGO GLY A 90 UNP Q8WZA1 EXPRESSION TAG SEQADV 5GGO SER A 91 UNP Q8WZA1 EXPRESSION TAG SEQADV 5GGO GLY B 87 UNP Q8WZA1 EXPRESSION TAG SEQADV 5GGO PRO B 88 UNP Q8WZA1 EXPRESSION TAG SEQADV 5GGO LEU B 89 UNP Q8WZA1 EXPRESSION TAG SEQADV 5GGO GLY B 90 UNP Q8WZA1 EXPRESSION TAG SEQADV 5GGO SER B 91 UNP Q8WZA1 EXPRESSION TAG SEQRES 1 A 164 GLY PRO LEU GLY SER GLY SER GLY PRO ARG ARG VAL LEU SEQRES 2 A 164 ASP VAL GLU VAL TYR SER SER ARG SER LYS VAL TYR VAL SEQRES 3 A 164 ALA VAL ASP GLY THR THR VAL LEU GLU ASP GLU ALA ARG SEQRES 4 A 164 GLU GLN GLY ARG GLY ILE HIS VAL ILE VAL LEU ASN GLN SEQRES 5 A 164 ALA THR GLY HIS VAL MET ALA LYS ARG VAL PHE ASP THR SEQRES 6 A 164 TYR SER PRO HIS GLU ASP GLU ALA MET VAL LEU PHE LEU SEQRES 7 A 164 ASN MET VAL ALA PRO GLY ARG VAL LEU ILE CYS THR VAL SEQRES 8 A 164 LYS ASP GLU GLY SER PHE HIS LEU LYS ASP THR ALA LYS SEQRES 9 A 164 ALA LEU LEU ARG SER LEU GLY SER GLN ALA GLY PRO ALA SEQRES 10 A 164 LEU GLY TRP ARG ASP THR TRP ALA PHE VAL GLY ARG LYS SEQRES 11 A 164 GLY GLY PRO VAL PHE GLY GLU LYS HIS SER LYS SER PRO SEQRES 12 A 164 ALA LEU SER SER TRP GLY ASP PRO VAL LEU LEU LYS THR SEQRES 13 A 164 ASP VAL PRO LEU SER SER ALA GLU SEQRES 1 B 164 GLY PRO LEU GLY SER GLY SER GLY PRO ARG ARG VAL LEU SEQRES 2 B 164 ASP VAL GLU VAL TYR SER SER ARG SER LYS VAL TYR VAL SEQRES 3 B 164 ALA VAL ASP GLY THR THR VAL LEU GLU ASP GLU ALA ARG SEQRES 4 B 164 GLU GLN GLY ARG GLY ILE HIS VAL ILE VAL LEU ASN GLN SEQRES 5 B 164 ALA THR GLY HIS VAL MET ALA LYS ARG VAL PHE ASP THR SEQRES 6 B 164 TYR SER PRO HIS GLU ASP GLU ALA MET VAL LEU PHE LEU SEQRES 7 B 164 ASN MET VAL ALA PRO GLY ARG VAL LEU ILE CYS THR VAL SEQRES 8 B 164 LYS ASP GLU GLY SER PHE HIS LEU LYS ASP THR ALA LYS SEQRES 9 B 164 ALA LEU LEU ARG SER LEU GLY SER GLN ALA GLY PRO ALA SEQRES 10 B 164 LEU GLY TRP ARG ASP THR TRP ALA PHE VAL GLY ARG LYS SEQRES 11 B 164 GLY GLY PRO VAL PHE GLY GLU LYS HIS SER LYS SER PRO SEQRES 12 B 164 ALA LEU SER SER TRP GLY ASP PRO VAL LEU LEU LYS THR SEQRES 13 B 164 ASP VAL PRO LEU SER SER ALA GLU HET LEC C 1 24 HET NGA C 2 14 HET LEC D 1 24 HET NGA D 2 14 HET EDO B 303 4 HETNAM LEC 4-NITROPHENYL 2-ACETAMIDO-2-DEOXY-BETA-D- HETNAM 2 LEC GLUCOPYRANOSIDE HETNAM NGA 2-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN LEC N-[(2S,3R,4R,5S,6R)-4,5-DIHYDROXY-6-(HYDROXYMETHYL)-2- HETSYN 2 LEC (4-NITROPHENOXY)OXAN-3-YL]ETHANAMIDE; 4-NITROPHENYL 2- HETSYN 3 LEC ACETAMIDO-2-DEOXY-BETA-D-GLUCOSIDE; 4-NITROPHENYL 2- HETSYN 4 LEC ACETAMIDO-2-DEOXY-D-GLUCOSIDE; 4-NITROPHENYL 2- HETSYN 5 LEC ACETAMIDO-2-DEOXY-GLUCOSIDE HETSYN NGA N-ACETYL-BETA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NGA BETA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 NGA ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-D-GALACTOSAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 LEC 2(C14 H18 N2 O8) FORMUL 3 NGA 2(C8 H15 N O6) FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *364(H2 O) HELIX 1 AA1 HIS A 155 VAL A 167 1 13 HELIX 2 AA2 LYS A 186 LEU A 196 1 11 HELIX 3 AA3 ALA A 200 LEU A 204 5 5 HELIX 4 AA4 HIS B 155 VAL B 167 1 13 HELIX 5 AA5 LYS B 186 LEU B 196 1 11 HELIX 6 AA6 ALA B 200 LEU B 204 5 5 SHEET 1 AA1 4 THR A 117 ASP A 122 0 SHEET 2 AA1 4 VAL A 110 VAL A 114 -1 N VAL A 110 O ASP A 122 SHEET 3 AA1 4 VAL A 98 SER A 105 -1 N TYR A 104 O TYR A 111 SHEET 4 AA1 4 VAL A 238 PRO A 245 -1 O THR A 242 N VAL A 101 SHEET 1 AA2 5 VAL A 143 PHE A 149 0 SHEET 2 AA2 5 GLY A 130 LEU A 136 -1 N VAL A 135 O MET A 144 SHEET 3 AA2 5 VAL A 172 LYS A 178 -1 O THR A 176 N HIS A 132 SHEET 4 AA2 5 THR A 209 ARG A 215 -1 O GLY A 214 N LEU A 173 SHEET 5 AA2 5 VAL A 220 SER A 226 -1 O LYS A 224 N ALA A 211 SHEET 1 AA3 4 THR B 117 ASP B 122 0 SHEET 2 AA3 4 VAL B 110 VAL B 114 -1 N VAL B 112 O VAL B 119 SHEET 3 AA3 4 LEU B 99 SER B 105 -1 N TYR B 104 O TYR B 111 SHEET 4 AA3 4 VAL B 238 VAL B 244 -1 O VAL B 244 N LEU B 99 SHEET 1 AA4 5 VAL B 143 PHE B 149 0 SHEET 2 AA4 5 GLY B 130 LEU B 136 -1 N VAL B 135 O MET B 144 SHEET 3 AA4 5 VAL B 172 LYS B 178 -1 O THR B 176 N HIS B 132 SHEET 4 AA4 5 THR B 209 ARG B 215 -1 O GLY B 214 N LEU B 173 SHEET 5 AA4 5 VAL B 220 SER B 226 -1 O LYS B 224 N ALA B 211 LINK O3 LEC C 1 C1 NGA C 2 1555 1555 1.40 LINK O3 LEC D 1 C1 NGA D 2 1555 1555 1.44 CISPEP 1 GLY A 218 PRO A 219 0 -6.04 CISPEP 2 GLY B 218 PRO B 219 0 1.18 CRYST1 70.016 89.705 53.358 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014282 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011148 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018741 0.00000