HEADER IMMUNE SYSTEM 16-JUN-16 5GGQ TITLE CRYSTAL STRUCTURE OF NIVOLUMAB FAB FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: NIVOLUMAB LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NIVOLUMAB HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606 KEYWDS THERAPEUTIC ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.S.HEO REVDAT 3 16-OCT-24 5GGQ 1 REMARK REVDAT 2 16-NOV-16 5GGQ 1 JRNL REVDAT 1 09-NOV-16 5GGQ 0 JRNL AUTH J.Y.LEE,H.T.LEE,W.SHIN,J.CHAE,J.CHOI,S.H.KIM,H.LIM, JRNL AUTH 2 T.WON HEO,K.Y.PARK,Y.J.LEE,S.E.RYU,J.Y.SON,J.U.LEE,Y.S.HEO JRNL TITL STRUCTURAL BASIS OF CHECKPOINT BLOCKADE BY MONOCLONAL JRNL TITL 2 ANTIBODIES IN CANCER IMMUNOTHERAPY JRNL REF NAT COMMUN V. 7 13354 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 27796306 JRNL DOI 10.1038/NCOMMS13354 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 39971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2006 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.1819 - 4.5757 0.99 2974 160 0.2222 0.2632 REMARK 3 2 4.5757 - 3.6336 1.00 2795 152 0.1783 0.1982 REMARK 3 3 3.6336 - 3.1748 1.00 2755 136 0.1880 0.2000 REMARK 3 4 3.1748 - 2.8848 1.00 2735 147 0.1974 0.2239 REMARK 3 5 2.8848 - 2.6781 1.00 2695 139 0.2018 0.2156 REMARK 3 6 2.6781 - 2.5203 1.00 2683 165 0.1977 0.2308 REMARK 3 7 2.5203 - 2.3941 1.00 2681 143 0.1961 0.2171 REMARK 3 8 2.3941 - 2.2899 1.00 2691 141 0.1958 0.2744 REMARK 3 9 2.2899 - 2.2018 1.00 2686 114 0.1858 0.2209 REMARK 3 10 2.2018 - 2.1259 1.00 2685 126 0.1816 0.2487 REMARK 3 11 2.1259 - 2.0594 1.00 2662 144 0.1786 0.2086 REMARK 3 12 2.0594 - 2.0005 1.00 2650 154 0.1916 0.2111 REMARK 3 13 2.0005 - 1.9479 1.00 2658 141 0.1946 0.2481 REMARK 3 14 1.9479 - 1.9004 0.99 2615 144 0.2082 0.2522 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3263 REMARK 3 ANGLE : 1.152 4437 REMARK 3 CHIRALITY : 0.044 501 REMARK 3 PLANARITY : 0.005 569 REMARK 3 DIHEDRAL : 14.111 1165 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1334 17.4254 104.4588 REMARK 3 T TENSOR REMARK 3 T11: 0.1701 T22: 0.1438 REMARK 3 T33: 0.1180 T12: 0.0054 REMARK 3 T13: -0.0011 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 2.7291 L22: 0.9442 REMARK 3 L33: 1.4169 L12: -0.1151 REMARK 3 L13: 1.0066 L23: 0.2384 REMARK 3 S TENSOR REMARK 3 S11: -0.0279 S12: 0.0115 S13: -0.1989 REMARK 3 S21: -0.0871 S22: 0.0361 S23: -0.0176 REMARK 3 S31: 0.0804 S32: 0.0130 S33: 0.0079 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 76 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9121 37.8986 108.8221 REMARK 3 T TENSOR REMARK 3 T11: 0.2373 T22: 0.1313 REMARK 3 T33: 0.1812 T12: -0.0092 REMARK 3 T13: -0.0629 T23: 0.0457 REMARK 3 L TENSOR REMARK 3 L11: 1.4328 L22: 1.7704 REMARK 3 L33: 1.0291 L12: 1.3010 REMARK 3 L13: 0.6237 L23: 1.2870 REMARK 3 S TENSOR REMARK 3 S11: -0.1387 S12: 0.1429 S13: 0.2986 REMARK 3 S21: -0.2204 S22: 0.0175 S23: 0.2645 REMARK 3 S31: -0.2070 S32: 0.0827 S33: 0.0909 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 138 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9651 47.0069 118.9072 REMARK 3 T TENSOR REMARK 3 T11: 0.1509 T22: 0.2464 REMARK 3 T33: 0.2649 T12: -0.0227 REMARK 3 T13: -0.0428 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 4.2389 L22: 6.1486 REMARK 3 L33: 1.5376 L12: -1.3356 REMARK 3 L13: -0.1052 L23: 0.7261 REMARK 3 S TENSOR REMARK 3 S11: -0.0310 S12: -0.2281 S13: 0.4341 REMARK 3 S21: -0.1656 S22: 0.0296 S23: 0.5346 REMARK 3 S31: -0.1083 S32: -0.2904 S33: 0.0262 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 175 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6788 64.2511 118.3226 REMARK 3 T TENSOR REMARK 3 T11: 0.1723 T22: -0.9976 REMARK 3 T33: 1.0335 T12: 0.4328 REMARK 3 T13: -0.3342 T23: -0.1508 REMARK 3 L TENSOR REMARK 3 L11: 5.6072 L22: 2.0128 REMARK 3 L33: 0.2177 L12: 1.9414 REMARK 3 L13: -1.1854 L23: 2.3625 REMARK 3 S TENSOR REMARK 3 S11: 0.5318 S12: -0.0234 S13: -0.4630 REMARK 3 S21: 0.0092 S22: 0.0190 S23: 1.0626 REMARK 3 S31: -0.0012 S32: -0.1385 S33: -0.1118 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 191 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.7386 55.0590 124.2921 REMARK 3 T TENSOR REMARK 3 T11: 0.2544 T22: 0.1794 REMARK 3 T33: 0.3147 T12: 0.0081 REMARK 3 T13: -0.0347 T23: -0.0570 REMARK 3 L TENSOR REMARK 3 L11: 2.9042 L22: 8.1829 REMARK 3 L33: 3.1610 L12: -0.9703 REMARK 3 L13: 0.3177 L23: -0.0030 REMARK 3 S TENSOR REMARK 3 S11: -0.0479 S12: -0.1582 S13: 0.6881 REMARK 3 S21: -0.2099 S22: -0.1492 S23: 0.4919 REMARK 3 S31: -0.2666 S32: -0.2543 S33: 0.1288 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 2 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3397 33.1233 84.2655 REMARK 3 T TENSOR REMARK 3 T11: 0.1816 T22: 0.2687 REMARK 3 T33: 0.1255 T12: 0.0198 REMARK 3 T13: -0.0207 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 3.8105 L22: 3.3008 REMARK 3 L33: 3.6291 L12: -0.9374 REMARK 3 L13: -0.7390 L23: 1.3965 REMARK 3 S TENSOR REMARK 3 S11: 0.2109 S12: 0.4114 S13: 0.0814 REMARK 3 S21: -0.2490 S22: -0.2473 S23: -0.2877 REMARK 3 S31: -0.1259 S32: 0.2285 S33: 0.0354 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 34 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9018 24.5710 90.7338 REMARK 3 T TENSOR REMARK 3 T11: 0.1030 T22: 0.1022 REMARK 3 T33: 0.1109 T12: 0.0245 REMARK 3 T13: -0.0090 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 4.1031 L22: 4.3775 REMARK 3 L33: 9.2241 L12: 1.7437 REMARK 3 L13: 3.6813 L23: 3.2423 REMARK 3 S TENSOR REMARK 3 S11: 0.0780 S12: 0.0077 S13: -0.0637 REMARK 3 S21: 0.1931 S22: -0.0552 S23: -0.0683 REMARK 3 S31: 0.3648 S32: 0.0391 S33: 0.0589 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 58 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3329 25.9760 85.0061 REMARK 3 T TENSOR REMARK 3 T11: 0.1426 T22: 0.1770 REMARK 3 T33: 0.1617 T12: 0.0450 REMARK 3 T13: -0.0282 T23: -0.0375 REMARK 3 L TENSOR REMARK 3 L11: 5.0440 L22: 2.8834 REMARK 3 L33: 6.3262 L12: -0.0562 REMARK 3 L13: -2.8038 L23: -0.3848 REMARK 3 S TENSOR REMARK 3 S11: 0.1691 S12: 0.5355 S13: -0.1576 REMARK 3 S21: -0.2169 S22: -0.1454 S23: 0.0275 REMARK 3 S31: 0.0661 S32: -0.1430 S33: -0.0441 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 77 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3538 35.2548 91.6452 REMARK 3 T TENSOR REMARK 3 T11: 0.1341 T22: 0.1552 REMARK 3 T33: 0.1457 T12: -0.0005 REMARK 3 T13: -0.0320 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 2.4304 L22: 1.5628 REMARK 3 L33: 2.3342 L12: 0.7218 REMARK 3 L13: 1.0063 L23: 0.2450 REMARK 3 S TENSOR REMARK 3 S11: -0.0561 S12: 0.1088 S13: 0.3452 REMARK 3 S21: 0.1265 S22: -0.0680 S23: -0.1079 REMARK 3 S31: -0.1363 S32: 0.0631 S33: 0.0580 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 120 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4088 61.1326 108.9797 REMARK 3 T TENSOR REMARK 3 T11: 0.8068 T22: 0.4245 REMARK 3 T33: 0.6711 T12: -0.1393 REMARK 3 T13: -0.3017 T23: 0.2442 REMARK 3 L TENSOR REMARK 3 L11: 0.3037 L22: 2.7921 REMARK 3 L33: 0.3486 L12: 0.7237 REMARK 3 L13: -0.0568 L23: 0.4563 REMARK 3 S TENSOR REMARK 3 S11: 0.9488 S12: -0.0285 S13: -0.5933 REMARK 3 S21: -0.5318 S22: 0.1346 S23: 0.3039 REMARK 3 S31: 0.7571 S32: 0.0650 S33: -0.7268 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 135 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4616 52.6020 101.6655 REMARK 3 T TENSOR REMARK 3 T11: 0.4991 T22: 0.3779 REMARK 3 T33: 0.4437 T12: -0.1752 REMARK 3 T13: -0.2047 T23: 0.1660 REMARK 3 L TENSOR REMARK 3 L11: 1.6905 L22: 1.5506 REMARK 3 L33: 2.2692 L12: 0.2921 REMARK 3 L13: 1.9619 L23: 0.3336 REMARK 3 S TENSOR REMARK 3 S11: -0.4683 S12: 0.6827 S13: 0.7973 REMARK 3 S21: -0.1970 S22: 0.1434 S23: 0.2088 REMARK 3 S31: -0.7509 S32: 0.4132 S33: 0.3136 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5GGQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1300000745. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39971 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 17.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 50.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID, PH 3.5, 2.0 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 143.49133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.74567 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.61850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.87283 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 179.36417 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 143.49133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 71.74567 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 35.87283 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 107.61850 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 179.36417 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH L 451 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 355 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 420 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY L 212 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 465 GLN H 1 REMARK 465 LYS H 210 REMARK 465 VAL H 211 REMARK 465 GLU H 212 REMARK 465 PRO H 213 REMARK 465 LYS H 214 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 THR H 219 REMARK 465 HIS H 220 REMARK 465 HIS H 221 REMARK 465 HIS H 222 REMARK 465 HIS H 223 REMARK 465 HIS H 224 REMARK 465 HIS H 225 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN H 192 O HOH H 301 1.86 REMARK 500 O HOH H 302 O HOH H 394 1.88 REMARK 500 O HOH L 398 O HOH L 423 1.94 REMARK 500 O HOH H 402 O HOH H 433 2.01 REMARK 500 NE ARG L 24 O HOH L 301 2.05 REMARK 500 O HOH H 377 O HOH H 417 2.06 REMARK 500 O HOH H 350 O HOH H 404 2.07 REMARK 500 O HOH H 387 O HOH H 425 2.08 REMARK 500 O HOH L 408 O HOH H 418 2.10 REMARK 500 O HOH H 416 O HOH H 438 2.11 REMARK 500 O HOH H 445 O HOH H 446 2.11 REMARK 500 O HOH H 392 O HOH H 400 2.12 REMARK 500 O HOH H 350 O HOH H 423 2.15 REMARK 500 O HOH L 425 O HOH L 453 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH L 304 O HOH H 317 12555 1.82 REMARK 500 O HOH H 399 O HOH H 399 7555 1.89 REMARK 500 O GLY L 16 NH2 ARG H 19 5555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 30 -123.37 49.87 REMARK 500 ALA L 51 -36.41 71.61 REMARK 500 ASP L 122 -92.16 -4.07 REMARK 500 ARG H 67 -41.95 -130.88 REMARK 500 ASP H 101 39.00 73.57 REMARK 500 SER H 128 -93.44 171.73 REMARK 500 LYS H 129 -29.63 163.63 REMARK 500 ASP H 144 65.63 62.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 449 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH H 450 DISTANCE = 6.59 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GGV RELATED DB: PDB REMARK 900 RELATED ID: 5GGU RELATED DB: PDB REMARK 900 RELATED ID: 5GGT RELATED DB: PDB REMARK 900 RELATED ID: 5GGS RELATED DB: PDB REMARK 900 RELATED ID: 5GGR RELATED DB: PDB DBREF 5GGQ L 1 214 PDB 5GGQ 5GGQ 1 214 DBREF 5GGQ H 1 225 PDB 5GGQ 5GGQ 1 225 SEQRES 1 L 214 GLU ILE VAL LEU THR GLN SER PRO ALA THR LEU SER LEU SEQRES 2 L 214 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 214 GLN SER VAL SER SER TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR ASP ALA SER SEQRES 5 L 214 ASN ARG ALA THR GLY ILE PRO ALA ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SER SEQRES 8 L 214 SER ASN TRP PRO ARG THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 L 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS SEQRES 1 H 225 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY VAL VAL GLN SEQRES 2 H 225 PRO GLY ARG SER LEU ARG LEU ASP CYS LYS ALA SER GLY SEQRES 3 H 225 ILE THR PHE SER ASN SER GLY MET HIS TRP VAL ARG GLN SEQRES 4 H 225 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA VAL ILE TRP SEQRES 5 H 225 TYR ASP GLY SER LYS ARG TYR TYR ALA ASP SER VAL LYS SEQRES 6 H 225 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 H 225 LEU PHE LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 225 ALA VAL TYR TYR CYS ALA THR ASN ASP ASP TYR TRP GLY SEQRES 9 H 225 GLN GLY THR LEU VAL THR VAL SER SER ALA SER THR LYS SEQRES 10 H 225 GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER SEQRES 11 H 225 THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS SEQRES 12 H 225 ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER SEQRES 13 H 225 GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 14 H 225 LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL SEQRES 15 H 225 THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE SEQRES 16 H 225 CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP SEQRES 17 H 225 LYS LYS VAL GLU PRO LYS SER CYS ASP LYS THR HIS HIS SEQRES 18 H 225 HIS HIS HIS HIS FORMUL 3 HOH *311(H2 O) HELIX 1 AA1 GLU L 79 PHE L 83 5 5 HELIX 2 AA2 ASP L 122 SER L 127 5 6 HELIX 3 AA3 ALA L 184 LYS L 188 5 5 HELIX 4 AA4 THR H 28 SER H 32 5 5 HELIX 5 AA5 ASP H 62 LYS H 65 5 4 HELIX 6 AA6 ASN H 74 LYS H 76 5 3 HELIX 7 AA7 ARG H 87 THR H 91 5 5 HELIX 8 AA8 SER H 156 ALA H 158 5 3 HELIX 9 AA9 SER H 187 LEU H 189 5 3 HELIX 10 AB1 LYS H 201 ASN H 204 5 4 SHEET 1 AA1 4 LEU L 4 SER L 7 0 SHEET 2 AA1 4 ALA L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA1 4 ASP L 70 ILE L 75 -1 O LEU L 73 N LEU L 21 SHEET 4 AA1 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA2 6 THR L 10 LEU L 13 0 SHEET 2 AA2 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA2 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA2 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AA2 6 ARG L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA2 6 ASN L 53 ARG L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AA3 4 THR L 10 LEU L 13 0 SHEET 2 AA3 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA3 4 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA3 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AA4 4 SER L 114 PHE L 118 0 SHEET 2 AA4 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AA4 4 TYR L 173 SER L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 AA4 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AA5 4 ALA L 153 LEU L 154 0 SHEET 2 AA5 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AA5 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AA5 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SHEET 1 AA6 4 GLN H 3 SER H 7 0 SHEET 2 AA6 4 LEU H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA6 4 THR H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA6 4 THR H 69 ASP H 73 -1 N SER H 71 O PHE H 80 SHEET 1 AA7 6 GLY H 10 VAL H 12 0 SHEET 2 AA7 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA7 6 ALA H 92 THR H 98 -1 N ALA H 92 O VAL H 109 SHEET 4 AA7 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA7 6 GLU H 46 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA7 6 ARG H 58 TYR H 60 -1 O TYR H 59 N VAL H 50 SHEET 1 AA8 4 SER H 120 LEU H 124 0 SHEET 2 AA8 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA8 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 AA8 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA9 4 SER H 120 LEU H 124 0 SHEET 2 AA9 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA9 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 AA9 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AB1 3 THR H 151 TRP H 154 0 SHEET 2 AB1 3 CYS H 196 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AB1 3 THR H 205 VAL H 207 -1 O VAL H 207 N VAL H 198 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.10 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.03 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.08 CISPEP 1 SER L 7 PRO L 8 0 -6.77 CISPEP 2 TRP L 94 PRO L 95 0 0.83 CISPEP 3 TYR L 140 PRO L 141 0 4.10 CISPEP 4 PHE H 146 PRO H 147 0 -6.80 CISPEP 5 GLU H 148 PRO H 149 0 2.23 CRYST1 88.342 88.342 215.237 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011320 0.006535 0.000000 0.00000 SCALE2 0.000000 0.013071 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004646 0.00000