data_5GIC # _entry.id 5GIC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.368 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5GIC pdb_00005gic 10.2210/pdb5gic/pdb WWPDB D_1300000825 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 5GID PDB . unspecified 5GIE PDB . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5GIC _pdbx_database_status.recvd_initial_deposition_date 2016-06-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shimizu, T.' 1 'Asano, L.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country NE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Febs Lett.' _citation.journal_id_ASTM FEBLAL _citation.journal_id_CSD 0165 _citation.journal_id_ISSN 0014-5793 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 590 _citation.language ? _citation.page_first 3270 _citation.page_last 3279 _citation.title 'Regulation of the vitamin D receptor by vitamin D lactam derivatives.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/1873-3468.12348 _citation.pdbx_database_id_PubMed 27500498 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Asano, L.' 1 ? primary 'Waku, T.' 2 ? primary 'Abe, R.' 3 ? primary 'Kuwabara, N.' 4 ? primary 'Ito, I.' 5 ? primary 'Yanagisawa, J.' 6 ? primary 'Nagasawa, K.' 7 ? primary 'Shimizu, T.' 8 ? # _cell.entry_id 5GIC _cell.length_a 154.315 _cell.length_b 42.444 _cell.length_c 42.106 _cell.angle_alpha 90.00 _cell.angle_beta 96.53 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GIC _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Vitamin D3 receptor' 28371.539 1 ? ? 'UNP RESIDUES 124-164,UNP RESIDUES 212-420' ? 2 polymer syn SRC1 1212.527 1 ? ? ? ? 3 non-polymer man ;(3~{R},5~{S})-5-[(2~{R})-2-[(1~{R},3~{a}~{S},4~{Z},7~{a}~{R})-7~{a}-methyl-4-[(2~{E})-2-[(3~{S},5~{R})-2-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-1-yl]propyl]-3-methyl-3-oxidanyl-1-(2-phenylethyl)pyrrolidin-2-one ; 547.768 1 ? ? ? ? 4 water nat water 18.015 30 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'VDR,1,25-dihydroxyvitamin D3 receptor,Nuclear receptor subfamily 1 group I member 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;LSEEQQHIIAILLDAHHKTYDPTYADFRDFRPPVRMDGSTGSVTLDLSPLSMLPHLADLVSYSIQKVIGFAKMIPGFRDL TSDDQIVLLKSSAIEVIMLRSNQSFTMDDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLM AICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRSLSFQPENSMKL TPLVLEVFGN ; ;LSEEQQHIIAILLDAHHKTYDPTYADFRDFRPPVRMDGSTGSVTLDLSPLSMLPHLADLVSYSIQKVIGFAKMIPGFRDL TSDDQIVLLKSSAIEVIMLRSNQSFTMDDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLM AICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRSLSFQPENSMKL TPLVLEVFGN ; A ? 2 'polypeptide(L)' no no NHPMLMNLLK NHPMLMNLLK C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 SER n 1 3 GLU n 1 4 GLU n 1 5 GLN n 1 6 GLN n 1 7 HIS n 1 8 ILE n 1 9 ILE n 1 10 ALA n 1 11 ILE n 1 12 LEU n 1 13 LEU n 1 14 ASP n 1 15 ALA n 1 16 HIS n 1 17 HIS n 1 18 LYS n 1 19 THR n 1 20 TYR n 1 21 ASP n 1 22 PRO n 1 23 THR n 1 24 TYR n 1 25 ALA n 1 26 ASP n 1 27 PHE n 1 28 ARG n 1 29 ASP n 1 30 PHE n 1 31 ARG n 1 32 PRO n 1 33 PRO n 1 34 VAL n 1 35 ARG n 1 36 MET n 1 37 ASP n 1 38 GLY n 1 39 SER n 1 40 THR n 1 41 GLY n 1 42 SER n 1 43 VAL n 1 44 THR n 1 45 LEU n 1 46 ASP n 1 47 LEU n 1 48 SER n 1 49 PRO n 1 50 LEU n 1 51 SER n 1 52 MET n 1 53 LEU n 1 54 PRO n 1 55 HIS n 1 56 LEU n 1 57 ALA n 1 58 ASP n 1 59 LEU n 1 60 VAL n 1 61 SER n 1 62 TYR n 1 63 SER n 1 64 ILE n 1 65 GLN n 1 66 LYS n 1 67 VAL n 1 68 ILE n 1 69 GLY n 1 70 PHE n 1 71 ALA n 1 72 LYS n 1 73 MET n 1 74 ILE n 1 75 PRO n 1 76 GLY n 1 77 PHE n 1 78 ARG n 1 79 ASP n 1 80 LEU n 1 81 THR n 1 82 SER n 1 83 ASP n 1 84 ASP n 1 85 GLN n 1 86 ILE n 1 87 VAL n 1 88 LEU n 1 89 LEU n 1 90 LYS n 1 91 SER n 1 92 SER n 1 93 ALA n 1 94 ILE n 1 95 GLU n 1 96 VAL n 1 97 ILE n 1 98 MET n 1 99 LEU n 1 100 ARG n 1 101 SER n 1 102 ASN n 1 103 GLN n 1 104 SER n 1 105 PHE n 1 106 THR n 1 107 MET n 1 108 ASP n 1 109 ASP n 1 110 MET n 1 111 SER n 1 112 TRP n 1 113 ASP n 1 114 CYS n 1 115 GLY n 1 116 SER n 1 117 GLN n 1 118 ASP n 1 119 TYR n 1 120 LYS n 1 121 TYR n 1 122 ASP n 1 123 VAL n 1 124 THR n 1 125 ASP n 1 126 VAL n 1 127 SER n 1 128 LYS n 1 129 ALA n 1 130 GLY n 1 131 HIS n 1 132 THR n 1 133 LEU n 1 134 GLU n 1 135 LEU n 1 136 ILE n 1 137 GLU n 1 138 PRO n 1 139 LEU n 1 140 ILE n 1 141 LYS n 1 142 PHE n 1 143 GLN n 1 144 VAL n 1 145 GLY n 1 146 LEU n 1 147 LYS n 1 148 LYS n 1 149 LEU n 1 150 ASN n 1 151 LEU n 1 152 HIS n 1 153 GLU n 1 154 GLU n 1 155 GLU n 1 156 HIS n 1 157 VAL n 1 158 LEU n 1 159 LEU n 1 160 MET n 1 161 ALA n 1 162 ILE n 1 163 CYS n 1 164 ILE n 1 165 VAL n 1 166 SER n 1 167 PRO n 1 168 ASP n 1 169 ARG n 1 170 PRO n 1 171 GLY n 1 172 VAL n 1 173 GLN n 1 174 ASP n 1 175 ALA n 1 176 LYS n 1 177 LEU n 1 178 VAL n 1 179 GLU n 1 180 ALA n 1 181 ILE n 1 182 GLN n 1 183 ASP n 1 184 ARG n 1 185 LEU n 1 186 SER n 1 187 ASN n 1 188 THR n 1 189 LEU n 1 190 GLN n 1 191 THR n 1 192 TYR n 1 193 ILE n 1 194 ARG n 1 195 CYS n 1 196 ARG n 1 197 HIS n 1 198 PRO n 1 199 PRO n 1 200 PRO n 1 201 GLY n 1 202 SER n 1 203 HIS n 1 204 GLN n 1 205 LEU n 1 206 TYR n 1 207 ALA n 1 208 LYS n 1 209 MET n 1 210 ILE n 1 211 GLN n 1 212 LYS n 1 213 LEU n 1 214 ALA n 1 215 ASP n 1 216 LEU n 1 217 ARG n 1 218 SER n 1 219 LEU n 1 220 ASN n 1 221 GLU n 1 222 GLU n 1 223 HIS n 1 224 SER n 1 225 LYS n 1 226 GLN n 1 227 TYR n 1 228 ARG n 1 229 SER n 1 230 LEU n 1 231 SER n 1 232 PHE n 1 233 GLN n 1 234 PRO n 1 235 GLU n 1 236 ASN n 1 237 SER n 1 238 MET n 1 239 LYS n 1 240 LEU n 1 241 THR n 1 242 PRO n 1 243 LEU n 1 244 VAL n 1 245 LEU n 1 246 GLU n 1 247 VAL n 1 248 PHE n 1 249 GLY n 1 250 ASN n 2 1 ASN n 2 2 HIS n 2 3 PRO n 2 4 MET n 2 5 LEU n 2 6 MET n 2 7 ASN n 2 8 LEU n 2 9 LEU n 2 10 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 41 Rat ? 'Vdr, Nr1i1' ? ? ? ? ? ? 'Rattus norvegicus' 10116 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 2 sample 'Biological sequence' 42 250 Rat ? 'Vdr, Nr1i1' ? ? ? ? ? ? 'Rattus norvegicus' 10116 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP VDR_RAT P13053 ? 1 LSEEQQHIIAILLDAHHKTYDPTYADFRDFRPPVRMDGSTG 124 2 UNP VDR_RAT P13053 ? 1 ;SVTLDLSPLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMDDMSWDCGSQDYKY DVTDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPG SHQLYAKMIQKLADLRSLNEEHSKQYRSLSFQPENSMKLTPLVLEVFGN ; 212 3 PDB 5GIC 5GIC ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5GIC A 1 ? 41 ? P13053 124 ? 164 ? 124 164 2 2 5GIC A 42 ? 250 ? P13053 212 ? 420 ? 212 420 3 3 5GIC C 1 ? 10 ? 5GIC 626 ? 635 ? 626 635 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DLC non-polymer . ;(3~{R},5~{S})-5-[(2~{R})-2-[(1~{R},3~{a}~{S},4~{Z},7~{a}~{R})-7~{a}-methyl-4-[(2~{E})-2-[(3~{S},5~{R})-2-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-1-yl]propyl]-3-methyl-3-oxidanyl-1-(2-phenylethyl)pyrrolidin-2-one ; ? 'C35 H49 N O4' 547.768 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5GIC _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.42 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.15 _exptl_crystal.description 'THE ENTRY CONTAINS FRIEDEL PAIRS IN I_PLUS/MINUS COLUMNS' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.1M Tris-HCl, PEG 8000, NaCl ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 90 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MAR CCD 130 mm' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-01-31 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NE3A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline AR-NE3A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5GIC _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.35 _reflns.d_resolution_low 30 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 11424 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high . _reflns_shell.d_res_low ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5GIC _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 11424 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.352 _refine.ls_percent_reflns_obs 97.63 _refine.ls_R_factor_obs 0.2202 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2169 _refine.ls_R_factor_R_free 0.2506 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.99 _refine.ls_number_reflns_R_free 2149 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'THE ENTRY CONTAINS FRIEDEL PAIRS IN I_PLUS/MINUS COLUMNS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.33 _refine.pdbx_overall_phase_error 29.59 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1898 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 40 _refine_hist.number_atoms_solvent 30 _refine_hist.number_atoms_total 1968 _refine_hist.d_res_high 2.352 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.004 ? ? 1981 'X-RAY DIFFRACTION' ? f_angle_d 0.922 ? ? 2700 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.125 ? ? 1213 'X-RAY DIFFRACTION' ? f_chiral_restr 0.044 ? ? 319 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 343 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.3522 2.4068 1161 0.3642 90.00 0.3243 . . 129 . . . . 'X-RAY DIFFRACTION' . 2.4068 2.4670 1306 0.3311 98.00 0.3726 . . 139 . . . . 'X-RAY DIFFRACTION' . 2.4670 2.5337 1302 0.3407 99.00 0.3852 . . 145 . . . . 'X-RAY DIFFRACTION' . 2.5337 2.6082 1336 0.3270 98.00 0.3222 . . 150 . . . . 'X-RAY DIFFRACTION' . 2.6082 2.6923 1261 0.2861 98.00 0.2942 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.6923 2.7885 1327 0.2863 98.00 0.3478 . . 149 . . . . 'X-RAY DIFFRACTION' . 2.7885 2.9000 1259 0.2655 98.00 0.3211 . . 138 . . . . 'X-RAY DIFFRACTION' . 2.9000 3.0319 1357 0.2753 99.00 0.2915 . . 153 . . . . 'X-RAY DIFFRACTION' . 3.0319 3.1916 1277 0.2629 99.00 0.3068 . . 147 . . . . 'X-RAY DIFFRACTION' . 3.1916 3.3913 1279 0.2332 98.00 0.2517 . . 142 . . . . 'X-RAY DIFFRACTION' . 3.3913 3.6527 1321 0.2078 98.00 0.2162 . . 145 . . . . 'X-RAY DIFFRACTION' . 3.6527 4.0195 1294 0.1865 99.00 0.2430 . . 144 . . . . 'X-RAY DIFFRACTION' . 4.0195 4.5994 1313 0.1578 98.00 0.1906 . . 148 . . . . 'X-RAY DIFFRACTION' . 4.5994 5.7879 1288 0.1757 98.00 0.2198 . . 141 . . . . 'X-RAY DIFFRACTION' . 5.7879 30.0125 1287 0.1662 96.00 0.2070 . . 138 . . . . # _struct.entry_id 5GIC _struct.title 'Crystal structure of VDR in complex with DLAM-2P' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5GIC _struct_keywords.text 'nuclear receptor, TRANSCRIPTION' _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 2 ? TYR A 20 ? SER A 125 TYR A 143 1 ? 19 HELX_P HELX_P2 AA2 TYR A 24 ? PHE A 30 ? TYR A 147 PHE A 153 5 ? 7 HELX_P HELX_P3 AA3 MET A 52 ? MET A 73 ? MET A 222 MET A 243 1 ? 22 HELX_P HELX_P4 AA4 THR A 81 ? SER A 101 ? THR A 251 SER A 271 1 ? 21 HELX_P HELX_P5 AA5 ASP A 122 ? SER A 127 ? ASP A 292 SER A 297 1 ? 6 HELX_P HELX_P6 AA6 THR A 132 ? LYS A 148 ? THR A 302 LYS A 318 1 ? 17 HELX_P HELX_P7 AA7 HIS A 152 ? VAL A 165 ? HIS A 322 VAL A 335 1 ? 14 HELX_P HELX_P8 AA8 ALA A 175 ? HIS A 197 ? ALA A 345 HIS A 367 1 ? 23 HELX_P HELX_P9 AA9 GLN A 204 ? PHE A 232 ? GLN A 374 PHE A 402 1 ? 29 HELX_P HELX_P10 AB1 GLN A 233 ? MET A 238 ? GLN A 403 MET A 408 1 ? 6 HELX_P HELX_P11 AB2 THR A 241 ? PHE A 248 ? THR A 411 PHE A 418 1 ? 8 HELX_P HELX_P12 AB3 HIS B 2 ? LYS B 10 ? HIS C 627 LYS C 635 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLN 117 A . ? GLN 287 A ASP 118 A ? ASP 288 A 1 7.54 2 PRO 199 A . ? PRO 369 A PRO 200 A ? PRO 370 A 1 -0.50 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 105 ? THR A 106 ? PHE A 275 THR A 276 AA1 2 SER A 111 ? ASP A 113 ? SER A 281 ASP A 283 AA1 3 LYS A 120 ? TYR A 121 ? LYS A 290 TYR A 291 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N THR A 106 ? N THR A 276 O SER A 111 ? O SER A 281 AA1 2 3 N TRP A 112 ? N TRP A 282 O TYR A 121 ? O TYR A 291 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id DLC _struct_site.pdbx_auth_seq_id 501 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 13 _struct_site.details 'binding site for residue DLC A 501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 TYR A 20 ? TYR A 143 . ? 1_555 ? 2 AC1 13 LEU A 53 ? LEU A 223 . ? 1_555 ? 3 AC1 13 SER A 63 ? SER A 233 . ? 1_555 ? 4 AC1 13 ILE A 97 ? ILE A 267 . ? 1_555 ? 5 AC1 13 ARG A 100 ? ARG A 270 . ? 1_555 ? 6 AC1 13 SER A 101 ? SER A 271 . ? 1_555 ? 7 AC1 13 SER A 104 ? SER A 274 . ? 1_555 ? 8 AC1 13 TRP A 112 ? TRP A 282 . ? 1_555 ? 9 AC1 13 VAL A 126 ? VAL A 296 . ? 1_555 ? 10 AC1 13 LEU A 135 ? LEU A 305 . ? 1_555 ? 11 AC1 13 HIS A 223 ? HIS A 393 . ? 1_555 ? 12 AC1 13 TYR A 227 ? TYR A 397 . ? 1_555 ? 13 AC1 13 LEU A 230 ? LEU A 400 . ? 1_555 ? # _atom_sites.entry_id 5GIC _atom_sites.fract_transf_matrix[1][1] 0.006480 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000741 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023560 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023904 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 124 124 LEU LEU A . n A 1 2 SER 2 125 125 SER SER A . n A 1 3 GLU 3 126 126 GLU GLU A . n A 1 4 GLU 4 127 127 GLU GLU A . n A 1 5 GLN 5 128 128 GLN GLN A . n A 1 6 GLN 6 129 129 GLN GLN A . n A 1 7 HIS 7 130 130 HIS HIS A . n A 1 8 ILE 8 131 131 ILE ILE A . n A 1 9 ILE 9 132 132 ILE ILE A . n A 1 10 ALA 10 133 133 ALA ALA A . n A 1 11 ILE 11 134 134 ILE ILE A . n A 1 12 LEU 12 135 135 LEU LEU A . n A 1 13 LEU 13 136 136 LEU LEU A . n A 1 14 ASP 14 137 137 ASP ASP A . n A 1 15 ALA 15 138 138 ALA ALA A . n A 1 16 HIS 16 139 139 HIS HIS A . n A 1 17 HIS 17 140 140 HIS HIS A . n A 1 18 LYS 18 141 141 LYS LYS A . n A 1 19 THR 19 142 142 THR THR A . n A 1 20 TYR 20 143 143 TYR TYR A . n A 1 21 ASP 21 144 144 ASP ASP A . n A 1 22 PRO 22 145 145 PRO PRO A . n A 1 23 THR 23 146 146 THR THR A . n A 1 24 TYR 24 147 147 TYR TYR A . n A 1 25 ALA 25 148 148 ALA ALA A . n A 1 26 ASP 26 149 149 ASP ASP A . n A 1 27 PHE 27 150 150 PHE PHE A . n A 1 28 ARG 28 151 151 ARG ARG A . n A 1 29 ASP 29 152 152 ASP ASP A . n A 1 30 PHE 30 153 153 PHE PHE A . n A 1 31 ARG 31 154 154 ARG ARG A . n A 1 32 PRO 32 155 155 PRO PRO A . n A 1 33 PRO 33 156 156 PRO PRO A . n A 1 34 VAL 34 157 157 VAL VAL A . n A 1 35 ARG 35 158 158 ARG ARG A . n A 1 36 MET 36 159 ? ? ? A . n A 1 37 ASP 37 160 ? ? ? A . n A 1 38 GLY 38 161 ? ? ? A . n A 1 39 SER 39 162 ? ? ? A . n A 1 40 THR 40 163 ? ? ? A . n A 1 41 GLY 41 164 ? ? ? A . n A 1 42 SER 42 212 ? ? ? A . n A 1 43 VAL 43 213 ? ? ? A . n A 1 44 THR 44 214 ? ? ? A . n A 1 45 LEU 45 215 ? ? ? A . n A 1 46 ASP 46 216 ? ? ? A . n A 1 47 LEU 47 217 ? ? ? A . n A 1 48 SER 48 218 ? ? ? A . n A 1 49 PRO 49 219 219 PRO PRO A . n A 1 50 LEU 50 220 220 LEU LEU A . n A 1 51 SER 51 221 221 SER SER A . n A 1 52 MET 52 222 222 MET MET A . n A 1 53 LEU 53 223 223 LEU LEU A . n A 1 54 PRO 54 224 224 PRO PRO A . n A 1 55 HIS 55 225 225 HIS HIS A . n A 1 56 LEU 56 226 226 LEU LEU A . n A 1 57 ALA 57 227 227 ALA ALA A . n A 1 58 ASP 58 228 228 ASP ASP A . n A 1 59 LEU 59 229 229 LEU LEU A . n A 1 60 VAL 60 230 230 VAL VAL A . n A 1 61 SER 61 231 231 SER SER A . n A 1 62 TYR 62 232 232 TYR TYR A . n A 1 63 SER 63 233 233 SER SER A . n A 1 64 ILE 64 234 234 ILE ILE A . n A 1 65 GLN 65 235 235 GLN GLN A . n A 1 66 LYS 66 236 236 LYS LYS A . n A 1 67 VAL 67 237 237 VAL VAL A . n A 1 68 ILE 68 238 238 ILE ILE A . n A 1 69 GLY 69 239 239 GLY GLY A . n A 1 70 PHE 70 240 240 PHE PHE A . n A 1 71 ALA 71 241 241 ALA ALA A . n A 1 72 LYS 72 242 242 LYS LYS A . n A 1 73 MET 73 243 243 MET MET A . n A 1 74 ILE 74 244 244 ILE ILE A . n A 1 75 PRO 75 245 245 PRO PRO A . n A 1 76 GLY 76 246 246 GLY GLY A . n A 1 77 PHE 77 247 247 PHE PHE A . n A 1 78 ARG 78 248 248 ARG ARG A . n A 1 79 ASP 79 249 249 ASP ASP A . n A 1 80 LEU 80 250 250 LEU LEU A . n A 1 81 THR 81 251 251 THR THR A . n A 1 82 SER 82 252 252 SER SER A . n A 1 83 ASP 83 253 253 ASP ASP A . n A 1 84 ASP 84 254 254 ASP ASP A . n A 1 85 GLN 85 255 255 GLN GLN A . n A 1 86 ILE 86 256 256 ILE ILE A . n A 1 87 VAL 87 257 257 VAL VAL A . n A 1 88 LEU 88 258 258 LEU LEU A . n A 1 89 LEU 89 259 259 LEU LEU A . n A 1 90 LYS 90 260 260 LYS LYS A . n A 1 91 SER 91 261 261 SER SER A . n A 1 92 SER 92 262 262 SER SER A . n A 1 93 ALA 93 263 263 ALA ALA A . n A 1 94 ILE 94 264 264 ILE ILE A . n A 1 95 GLU 95 265 265 GLU GLU A . n A 1 96 VAL 96 266 266 VAL VAL A . n A 1 97 ILE 97 267 267 ILE ILE A . n A 1 98 MET 98 268 268 MET MET A . n A 1 99 LEU 99 269 269 LEU LEU A . n A 1 100 ARG 100 270 270 ARG ARG A . n A 1 101 SER 101 271 271 SER SER A . n A 1 102 ASN 102 272 272 ASN ASN A . n A 1 103 GLN 103 273 273 GLN GLN A . n A 1 104 SER 104 274 274 SER SER A . n A 1 105 PHE 105 275 275 PHE PHE A . n A 1 106 THR 106 276 276 THR THR A . n A 1 107 MET 107 277 277 MET MET A . n A 1 108 ASP 108 278 278 ASP ASP A . n A 1 109 ASP 109 279 279 ASP ASP A . n A 1 110 MET 110 280 280 MET MET A . n A 1 111 SER 111 281 281 SER SER A . n A 1 112 TRP 112 282 282 TRP TRP A . n A 1 113 ASP 113 283 283 ASP ASP A . n A 1 114 CYS 114 284 284 CYS CYS A . n A 1 115 GLY 115 285 285 GLY GLY A . n A 1 116 SER 116 286 286 SER SER A . n A 1 117 GLN 117 287 287 GLN GLN A . n A 1 118 ASP 118 288 288 ASP ASP A . n A 1 119 TYR 119 289 289 TYR TYR A . n A 1 120 LYS 120 290 290 LYS LYS A . n A 1 121 TYR 121 291 291 TYR TYR A . n A 1 122 ASP 122 292 292 ASP ASP A . n A 1 123 VAL 123 293 293 VAL VAL A . n A 1 124 THR 124 294 294 THR THR A . n A 1 125 ASP 125 295 295 ASP ASP A . n A 1 126 VAL 126 296 296 VAL VAL A . n A 1 127 SER 127 297 297 SER SER A . n A 1 128 LYS 128 298 298 LYS LYS A . n A 1 129 ALA 129 299 299 ALA ALA A . n A 1 130 GLY 130 300 300 GLY GLY A . n A 1 131 HIS 131 301 301 HIS HIS A . n A 1 132 THR 132 302 302 THR THR A . n A 1 133 LEU 133 303 303 LEU LEU A . n A 1 134 GLU 134 304 304 GLU GLU A . n A 1 135 LEU 135 305 305 LEU LEU A . n A 1 136 ILE 136 306 306 ILE ILE A . n A 1 137 GLU 137 307 307 GLU GLU A . n A 1 138 PRO 138 308 308 PRO PRO A . n A 1 139 LEU 139 309 309 LEU LEU A . n A 1 140 ILE 140 310 310 ILE ILE A . n A 1 141 LYS 141 311 311 LYS LYS A . n A 1 142 PHE 142 312 312 PHE PHE A . n A 1 143 GLN 143 313 313 GLN GLN A . n A 1 144 VAL 144 314 314 VAL VAL A . n A 1 145 GLY 145 315 315 GLY GLY A . n A 1 146 LEU 146 316 316 LEU LEU A . n A 1 147 LYS 147 317 317 LYS LYS A . n A 1 148 LYS 148 318 318 LYS LYS A . n A 1 149 LEU 149 319 319 LEU LEU A . n A 1 150 ASN 150 320 320 ASN ASN A . n A 1 151 LEU 151 321 321 LEU LEU A . n A 1 152 HIS 152 322 322 HIS HIS A . n A 1 153 GLU 153 323 323 GLU GLU A . n A 1 154 GLU 154 324 324 GLU GLU A . n A 1 155 GLU 155 325 325 GLU GLU A . n A 1 156 HIS 156 326 326 HIS HIS A . n A 1 157 VAL 157 327 327 VAL VAL A . n A 1 158 LEU 158 328 328 LEU LEU A . n A 1 159 LEU 159 329 329 LEU LEU A . n A 1 160 MET 160 330 330 MET MET A . n A 1 161 ALA 161 331 331 ALA ALA A . n A 1 162 ILE 162 332 332 ILE ILE A . n A 1 163 CYS 163 333 333 CYS CYS A . n A 1 164 ILE 164 334 334 ILE ILE A . n A 1 165 VAL 165 335 335 VAL VAL A . n A 1 166 SER 166 336 336 SER SER A . n A 1 167 PRO 167 337 337 PRO PRO A . n A 1 168 ASP 168 338 338 ASP ASP A . n A 1 169 ARG 169 339 339 ARG ARG A . n A 1 170 PRO 170 340 340 PRO PRO A . n A 1 171 GLY 171 341 341 GLY GLY A . n A 1 172 VAL 172 342 342 VAL VAL A . n A 1 173 GLN 173 343 343 GLN GLN A . n A 1 174 ASP 174 344 344 ASP ASP A . n A 1 175 ALA 175 345 345 ALA ALA A . n A 1 176 LYS 176 346 346 LYS LYS A . n A 1 177 LEU 177 347 347 LEU LEU A . n A 1 178 VAL 178 348 348 VAL VAL A . n A 1 179 GLU 179 349 349 GLU GLU A . n A 1 180 ALA 180 350 350 ALA ALA A . n A 1 181 ILE 181 351 351 ILE ILE A . n A 1 182 GLN 182 352 352 GLN GLN A . n A 1 183 ASP 183 353 353 ASP ASP A . n A 1 184 ARG 184 354 354 ARG ARG A . n A 1 185 LEU 185 355 355 LEU LEU A . n A 1 186 SER 186 356 356 SER SER A . n A 1 187 ASN 187 357 357 ASN ASN A . n A 1 188 THR 188 358 358 THR THR A . n A 1 189 LEU 189 359 359 LEU LEU A . n A 1 190 GLN 190 360 360 GLN GLN A . n A 1 191 THR 191 361 361 THR THR A . n A 1 192 TYR 192 362 362 TYR TYR A . n A 1 193 ILE 193 363 363 ILE ILE A . n A 1 194 ARG 194 364 364 ARG ARG A . n A 1 195 CYS 195 365 365 CYS CYS A . n A 1 196 ARG 196 366 366 ARG ARG A . n A 1 197 HIS 197 367 367 HIS HIS A . n A 1 198 PRO 198 368 368 PRO PRO A . n A 1 199 PRO 199 369 369 PRO PRO A . n A 1 200 PRO 200 370 370 PRO PRO A . n A 1 201 GLY 201 371 371 GLY GLY A . n A 1 202 SER 202 372 372 SER SER A . n A 1 203 HIS 203 373 373 HIS HIS A . n A 1 204 GLN 204 374 374 GLN GLN A . n A 1 205 LEU 205 375 375 LEU LEU A . n A 1 206 TYR 206 376 376 TYR TYR A . n A 1 207 ALA 207 377 377 ALA ALA A . n A 1 208 LYS 208 378 378 LYS LYS A . n A 1 209 MET 209 379 379 MET MET A . n A 1 210 ILE 210 380 380 ILE ILE A . n A 1 211 GLN 211 381 381 GLN GLN A . n A 1 212 LYS 212 382 382 LYS LYS A . n A 1 213 LEU 213 383 383 LEU LEU A . n A 1 214 ALA 214 384 384 ALA ALA A . n A 1 215 ASP 215 385 385 ASP ASP A . n A 1 216 LEU 216 386 386 LEU LEU A . n A 1 217 ARG 217 387 387 ARG ARG A . n A 1 218 SER 218 388 388 SER SER A . n A 1 219 LEU 219 389 389 LEU LEU A . n A 1 220 ASN 220 390 390 ASN ASN A . n A 1 221 GLU 221 391 391 GLU GLU A . n A 1 222 GLU 222 392 392 GLU GLU A . n A 1 223 HIS 223 393 393 HIS HIS A . n A 1 224 SER 224 394 394 SER SER A . n A 1 225 LYS 225 395 395 LYS LYS A . n A 1 226 GLN 226 396 396 GLN GLN A . n A 1 227 TYR 227 397 397 TYR TYR A . n A 1 228 ARG 228 398 398 ARG ARG A . n A 1 229 SER 229 399 399 SER SER A . n A 1 230 LEU 230 400 400 LEU LEU A . n A 1 231 SER 231 401 401 SER SER A . n A 1 232 PHE 232 402 402 PHE PHE A . n A 1 233 GLN 233 403 403 GLN GLN A . n A 1 234 PRO 234 404 404 PRO PRO A . n A 1 235 GLU 235 405 405 GLU GLU A . n A 1 236 ASN 236 406 406 ASN ASN A . n A 1 237 SER 237 407 407 SER SER A . n A 1 238 MET 238 408 408 MET MET A . n A 1 239 LYS 239 409 409 LYS LYS A . n A 1 240 LEU 240 410 410 LEU LEU A . n A 1 241 THR 241 411 411 THR THR A . n A 1 242 PRO 242 412 412 PRO PRO A . n A 1 243 LEU 243 413 413 LEU LEU A . n A 1 244 VAL 244 414 414 VAL VAL A . n A 1 245 LEU 245 415 415 LEU LEU A . n A 1 246 GLU 246 416 416 GLU GLU A . n A 1 247 VAL 247 417 417 VAL VAL A . n A 1 248 PHE 248 418 418 PHE PHE A . n A 1 249 GLY 249 419 419 GLY GLY A . n A 1 250 ASN 250 420 420 ASN ASN A . n B 2 1 ASN 1 626 626 ASN ASN C . n B 2 2 HIS 2 627 627 HIS HIS C . n B 2 3 PRO 3 628 628 PRO PRO C . n B 2 4 MET 4 629 629 MET MET C . n B 2 5 LEU 5 630 630 LEU LEU C . n B 2 6 MET 6 631 631 MET MET C . n B 2 7 ASN 7 632 632 ASN ASN C . n B 2 8 LEU 8 633 633 LEU LEU C . n B 2 9 LEU 9 634 634 LEU LEU C . n B 2 10 LYS 10 635 635 LYS LYS C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 DLC 1 501 501 DLC DLC A . D 4 HOH 1 601 27 HOH HOH A . D 4 HOH 2 602 32 HOH HOH A . D 4 HOH 3 603 13 HOH HOH A . D 4 HOH 4 604 14 HOH HOH A . D 4 HOH 5 605 2 HOH HOH A . D 4 HOH 6 606 1 HOH HOH A . D 4 HOH 7 607 26 HOH HOH A . D 4 HOH 8 608 3 HOH HOH A . D 4 HOH 9 609 18 HOH HOH A . D 4 HOH 10 610 4 HOH HOH A . D 4 HOH 11 611 5 HOH HOH A . D 4 HOH 12 612 25 HOH HOH A . D 4 HOH 13 613 9 HOH HOH A . D 4 HOH 14 614 12 HOH HOH A . D 4 HOH 15 615 24 HOH HOH A . D 4 HOH 16 616 6 HOH HOH A . D 4 HOH 17 617 8 HOH HOH A . D 4 HOH 18 618 33 HOH HOH A . D 4 HOH 19 619 30 HOH HOH A . D 4 HOH 20 620 7 HOH HOH A . D 4 HOH 21 621 35 HOH HOH A . D 4 HOH 22 622 29 HOH HOH A . D 4 HOH 23 623 36 HOH HOH A . D 4 HOH 24 624 16 HOH HOH A . D 4 HOH 25 625 10 HOH HOH A . D 4 HOH 26 626 19 HOH HOH A . E 4 HOH 1 701 23 HOH HOH C . E 4 HOH 2 702 34 HOH HOH C . E 4 HOH 3 703 15 HOH HOH C . E 4 HOH 4 704 20 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-12-07 2 'Structure model' 1 1 2020-02-26 3 'Structure model' 2 0 2023-05-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' diffrn_source 3 3 'Structure model' chem_comp 4 3 'Structure model' database_2 5 3 'Structure model' entity 6 3 'Structure model' pdbx_entity_nonpoly # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_id_CSD' 2 2 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 3 3 'Structure model' '_chem_comp.formula' 4 3 'Structure model' '_chem_comp.formula_weight' 5 3 'Structure model' '_chem_comp.name' 6 3 'Structure model' '_database_2.pdbx_DOI' 7 3 'Structure model' '_database_2.pdbx_database_accession' 8 3 'Structure model' '_entity.formula_weight' 9 3 'Structure model' '_entity.pdbx_description' 10 3 'Structure model' '_pdbx_entity_nonpoly.name' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -18.6168 6.2780 8.5007 0.4831 0.4004 0.4302 -0.0186 0.0089 -0.0609 5.3442 1.1473 3.2685 0.2267 -0.6195 -1.0193 -0.0506 -0.1502 0.1285 0.2520 -0.2200 -0.2594 -0.3800 -0.0968 -0.0439 'X-RAY DIFFRACTION' 2 ? refined -17.8900 -0.0140 3.6297 0.3561 0.4347 0.3984 0.0101 -0.0307 -0.0065 6.0429 2.1683 2.6369 -0.5266 0.0862 -0.3468 0.0407 0.0781 -0.1530 0.0498 -0.0806 0.0836 -0.1949 0.1203 0.0593 'X-RAY DIFFRACTION' 3 ? refined -13.6502 10.9699 -9.4112 0.8464 0.6853 0.9520 -0.0060 0.1652 0.2154 4.2311 0.7548 1.9913 -0.6856 -0.5572 -0.8179 0.6138 1.2702 0.0857 -0.5851 0.4303 -0.6022 -1.0307 0.3968 0.0255 'X-RAY DIFFRACTION' 4 ? refined -25.5947 3.7392 -9.3554 0.5234 0.6914 0.3821 0.0786 -0.0188 0.0746 5.0315 2.4623 2.8885 0.4199 0.4771 -1.1374 -0.2672 0.7235 0.0456 0.1090 0.0548 0.0454 0.0077 -0.3477 -0.0001 'X-RAY DIFFRACTION' 5 ? refined -27.6741 -4.9385 6.4292 0.3821 0.4814 0.4381 -0.0152 0.0162 -0.0262 6.0775 1.8873 3.8393 -0.0770 0.3645 -0.0464 0.0548 0.2042 -0.7072 0.1921 -0.2571 0.3631 0.0458 -0.4841 -0.0034 'X-RAY DIFFRACTION' 6 ? refined -37.9399 -2.6813 9.5388 0.3323 0.7284 0.5503 0.0153 -0.0024 0.0893 5.6808 2.7049 3.5676 -1.3881 0.4771 -1.1740 -0.0073 -1.0278 -0.6816 0.0790 0.2090 0.6555 -0.0195 -0.9582 -0.1230 'X-RAY DIFFRACTION' 7 ? refined -23.7510 -5.4424 -5.9130 0.3980 0.6734 0.4535 0.0696 -0.0694 -0.1997 4.9043 1.7376 2.9902 -0.0297 -0.9214 -0.1681 0.4026 1.1125 -0.5446 -0.3981 -0.3248 0.0341 -0.2078 -0.1189 0.0422 'X-RAY DIFFRACTION' 8 ? refined -4.3309 -5.5972 -4.0353 0.4154 0.9045 0.5537 0.0508 0.0527 -0.0368 6.6988 2.4681 4.5761 -0.5628 -0.8961 -0.2495 -0.3283 1.5178 -0.6065 -0.4053 -0.4309 -0.1905 0.5924 -0.0363 0.2603 'X-RAY DIFFRACTION' 9 ? refined -7.8822 -10.0670 10.9727 0.4273 1.1667 0.8908 0.0600 -0.0087 0.2310 6.8316 2.8225 3.7889 -0.0500 0.0008 -0.6782 -0.0725 -0.7253 -1.2792 -0.3479 -0.3991 -0.6903 0.8381 0.3903 0.2491 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 124 through 222 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 223 through 283 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 284 through 301 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 302 through 319 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 320 through 345 ) ; 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 346 through 374 ) ; 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 375 through 402 ) ; 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 403 through 420 ) ; 'X-RAY DIFFRACTION' 9 9 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 626 through 635 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.10.1_2155)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NE2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HIS _pdbx_validate_close_contact.auth_seq_id_1 393 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O4 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 DLC _pdbx_validate_close_contact.auth_seq_id_2 501 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.14 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 287 ? ? -151.92 61.16 2 1 ASP A 288 ? ? 51.34 -107.13 3 1 TYR A 289 ? ? -98.36 40.37 4 1 GLN A 343 ? ? -83.82 -83.00 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 151 ? CG ? A ARG 28 CG 2 1 Y 1 A ARG 151 ? CD ? A ARG 28 CD 3 1 Y 1 A ARG 151 ? NE ? A ARG 28 NE 4 1 Y 1 A ARG 151 ? CZ ? A ARG 28 CZ 5 1 Y 1 A ARG 151 ? NH1 ? A ARG 28 NH1 6 1 Y 1 A ARG 151 ? NH2 ? A ARG 28 NH2 7 1 Y 1 A ARG 158 ? CG ? A ARG 35 CG 8 1 Y 1 A ARG 158 ? CD ? A ARG 35 CD 9 1 Y 1 A ARG 158 ? NE ? A ARG 35 NE 10 1 Y 1 A ARG 158 ? CZ ? A ARG 35 CZ 11 1 Y 1 A ARG 158 ? NH1 ? A ARG 35 NH1 12 1 Y 1 A ARG 158 ? NH2 ? A ARG 35 NH2 13 1 Y 1 A LYS 242 ? CG ? A LYS 72 CG 14 1 Y 1 A LYS 242 ? CD ? A LYS 72 CD 15 1 Y 1 A LYS 242 ? CE ? A LYS 72 CE 16 1 Y 1 A LYS 242 ? NZ ? A LYS 72 NZ 17 1 Y 1 A ARG 248 ? CG ? A ARG 78 CG 18 1 Y 1 A ARG 248 ? CD ? A ARG 78 CD 19 1 Y 1 A ARG 248 ? NE ? A ARG 78 NE 20 1 Y 1 A ARG 248 ? CZ ? A ARG 78 CZ 21 1 Y 1 A ARG 248 ? NH1 ? A ARG 78 NH1 22 1 Y 1 A ARG 248 ? NH2 ? A ARG 78 NH2 23 1 Y 1 A ASP 253 ? CG ? A ASP 83 CG 24 1 Y 1 A ASP 253 ? OD1 ? A ASP 83 OD1 25 1 Y 1 A ASP 253 ? OD2 ? A ASP 83 OD2 26 1 Y 1 A GLN 287 ? CG ? A GLN 117 CG 27 1 Y 1 A GLN 287 ? CD ? A GLN 117 CD 28 1 Y 1 A GLN 287 ? OE1 ? A GLN 117 OE1 29 1 Y 1 A GLN 287 ? NE2 ? A GLN 117 NE2 30 1 Y 1 A ASP 288 ? CG ? A ASP 118 CG 31 1 Y 1 A ASP 288 ? OD1 ? A ASP 118 OD1 32 1 Y 1 A ASP 288 ? OD2 ? A ASP 118 OD2 33 1 Y 1 A LYS 290 ? CG ? A LYS 120 CG 34 1 Y 1 A LYS 290 ? CD ? A LYS 120 CD 35 1 Y 1 A LYS 290 ? CE ? A LYS 120 CE 36 1 Y 1 A LYS 290 ? NZ ? A LYS 120 NZ 37 1 Y 1 A LYS 298 ? CG ? A LYS 128 CG 38 1 Y 1 A LYS 298 ? CD ? A LYS 128 CD 39 1 Y 1 A LYS 298 ? CE ? A LYS 128 CE 40 1 Y 1 A LYS 298 ? NZ ? A LYS 128 NZ 41 1 Y 1 A HIS 301 ? CG ? A HIS 131 CG 42 1 Y 1 A HIS 301 ? ND1 ? A HIS 131 ND1 43 1 Y 1 A HIS 301 ? CD2 ? A HIS 131 CD2 44 1 Y 1 A HIS 301 ? CE1 ? A HIS 131 CE1 45 1 Y 1 A HIS 301 ? NE2 ? A HIS 131 NE2 46 1 Y 1 A LYS 311 ? CG ? A LYS 141 CG 47 1 Y 1 A LYS 311 ? CD ? A LYS 141 CD 48 1 Y 1 A LYS 311 ? CE ? A LYS 141 CE 49 1 Y 1 A LYS 311 ? NZ ? A LYS 141 NZ 50 1 Y 1 A GLN 343 ? CG ? A GLN 173 CG 51 1 Y 1 A GLN 343 ? CD ? A GLN 173 CD 52 1 Y 1 A GLN 343 ? OE1 ? A GLN 173 OE1 53 1 Y 1 A GLN 343 ? NE2 ? A GLN 173 NE2 54 1 Y 1 A LYS 346 ? CG ? A LYS 176 CG 55 1 Y 1 A LYS 346 ? CD ? A LYS 176 CD 56 1 Y 1 A LYS 346 ? CE ? A LYS 176 CE 57 1 Y 1 A LYS 346 ? NZ ? A LYS 176 NZ 58 1 Y 1 A GLU 349 ? CG ? A GLU 179 CG 59 1 Y 1 A GLU 349 ? CD ? A GLU 179 CD 60 1 Y 1 A GLU 349 ? OE1 ? A GLU 179 OE1 61 1 Y 1 A GLU 349 ? OE2 ? A GLU 179 OE2 62 1 Y 1 A LYS 395 ? CG ? A LYS 225 CG 63 1 Y 1 A LYS 395 ? CD ? A LYS 225 CD 64 1 Y 1 A LYS 395 ? CE ? A LYS 225 CE 65 1 Y 1 A LYS 395 ? NZ ? A LYS 225 NZ 66 1 Y 1 A ARG 398 ? CG ? A ARG 228 CG 67 1 Y 1 A ARG 398 ? CD ? A ARG 228 CD 68 1 Y 1 A ARG 398 ? NE ? A ARG 228 NE 69 1 Y 1 A ARG 398 ? CZ ? A ARG 228 CZ 70 1 Y 1 A ARG 398 ? NH1 ? A ARG 228 NH1 71 1 Y 1 A ARG 398 ? NH2 ? A ARG 228 NH2 72 1 Y 1 A PHE 402 ? CG ? A PHE 232 CG 73 1 Y 1 A PHE 402 ? CD1 ? A PHE 232 CD1 74 1 Y 1 A PHE 402 ? CD2 ? A PHE 232 CD2 75 1 Y 1 A PHE 402 ? CE1 ? A PHE 232 CE1 76 1 Y 1 A PHE 402 ? CE2 ? A PHE 232 CE2 77 1 Y 1 A PHE 402 ? CZ ? A PHE 232 CZ 78 1 Y 1 A GLN 403 ? CG ? A GLN 233 CG 79 1 Y 1 A GLN 403 ? CD ? A GLN 233 CD 80 1 Y 1 A GLN 403 ? OE1 ? A GLN 233 OE1 81 1 Y 1 A GLN 403 ? NE2 ? A GLN 233 NE2 82 1 Y 1 A GLU 405 ? CG ? A GLU 235 CG 83 1 Y 1 A GLU 405 ? CD ? A GLU 235 CD 84 1 Y 1 A GLU 405 ? OE1 ? A GLU 235 OE1 85 1 Y 1 A GLU 405 ? OE2 ? A GLU 235 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 159 ? A MET 36 2 1 Y 1 A ASP 160 ? A ASP 37 3 1 Y 1 A GLY 161 ? A GLY 38 4 1 Y 1 A SER 162 ? A SER 39 5 1 Y 1 A THR 163 ? A THR 40 6 1 Y 1 A GLY 164 ? A GLY 41 7 1 Y 1 A SER 212 ? A SER 42 8 1 Y 1 A VAL 213 ? A VAL 43 9 1 Y 1 A THR 214 ? A THR 44 10 1 Y 1 A LEU 215 ? A LEU 45 11 1 Y 1 A ASP 216 ? A ASP 46 12 1 Y 1 A LEU 217 ? A LEU 47 13 1 Y 1 A SER 218 ? A SER 48 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 ;(3~{R},5~{S})-5-[(2~{R})-2-[(1~{R},3~{a}~{S},4~{Z},7~{a}~{R})-7~{a}-methyl-4-[(2~{E})-2-[(3~{S},5~{R})-2-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-1-yl]propyl]-3-methyl-3-oxidanyl-1-(2-phenylethyl)pyrrolidin-2-one ; DLC 4 water HOH #