HEADER HYDROLASE/HYDROLASE INHIBITOR 24-JUN-16 5GIM TITLE CRYSTAL STRUCTURE OF THROMBIN-AVATHRIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBIN LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.21.5; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: THROMBIN HEAVY CHAIN; COMPND 8 CHAIN: B; COMPND 9 EC: 3.4.21.5; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: N-TERMINAL PEPTIDE FROM PUTATIVE UNCHARACTERIZED PROTEIN COMPND 13 AVAHIRU; COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: C-TERMINAL PEPTIDE FROM PUTATIVE UNCHARACTERIZED PROTEIN COMPND 18 AVAHIRU; COMPND 19 CHAIN: D; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F2; SOURCE 6 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SP2/0-AG14; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PCAGG; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: F2; SOURCE 17 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 18 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: SP2/0-AG14; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 MOL_ID: 3; SOURCE 23 SYNTHETIC: YES; SOURCE 24 ORGANISM_SCIENTIFIC: AMBLYOMMA VARIEGATUM; SOURCE 25 ORGANISM_COMMON: TROPICAL BONT TICK; SOURCE 26 ORGANISM_TAXID: 34610; SOURCE 27 OTHER_DETAILS: SOLID PHASE PEPTIDE SYNTHESIS; SOURCE 28 MOL_ID: 4; SOURCE 29 SYNTHETIC: YES; SOURCE 30 ORGANISM_SCIENTIFIC: AMBLYOMMA VARIEGATUM; SOURCE 31 ORGANISM_COMMON: TROPICAL BONT TICK; SOURCE 32 ORGANISM_TAXID: 34610; SOURCE 33 OTHER_DETAILS: SOLID PHASE PEPTIDE SYNTHESIS KEYWDS HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.M.KINI,C.Y.KOH,J.K.IYER,K.SWAMINATHAN REVDAT 3 08-NOV-23 5GIM 1 REMARK REVDAT 2 12-JUL-17 5GIM 1 JRNL REVDAT 1 03-MAY-17 5GIM 0 JRNL AUTH J.K.IYER,C.Y.KOH,M.KAZIMIROVA,L.ROLLER,C.JOBICHEN, JRNL AUTH 2 K.SWAMINATHAN,J.MIZUGUCHI,S.IWANAGA,P.A.NUTTALL,M.Y.CHAN, JRNL AUTH 3 R.M.KINI JRNL TITL AVATHRIN: A NOVEL THROMBIN INHIBITOR DERIVED FROM A JRNL TITL 2 MULTICOPY PRECURSOR IN THE SALIVARY GLANDS OF THE IXODID JRNL TITL 3 TICK, AMBLYOMMA VARIEGATUM. JRNL REF FASEB J. V. 31 2981 2017 JRNL REFN ESSN 1530-6860 JRNL PMID 28363953 JRNL DOI 10.1096/FJ.201601216R REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 18213 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 941 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.14 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1157 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.1660 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2388 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.11000 REMARK 3 B22 (A**2) : -0.45000 REMARK 3 B33 (A**2) : -0.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.60000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.228 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.119 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2506 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2385 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3389 ; 1.323 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5500 ; 0.906 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 305 ; 6.469 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;33.139 ;23.193 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 448 ;13.450 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;15.471 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 352 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2812 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 585 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1211 ; 0.223 ; 0.965 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1210 ; 0.223 ; 0.965 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1513 ; 0.405 ; 1.446 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1E A 7 REMARK 3 ORIGIN FOR THE GROUP (A): 9.4390 9.3970 88.3660 REMARK 3 T TENSOR REMARK 3 T11: 0.1325 T22: 0.1069 REMARK 3 T33: 0.1326 T12: -0.0251 REMARK 3 T13: 0.0283 T23: -0.0360 REMARK 3 L TENSOR REMARK 3 L11: 17.3072 L22: 8.5527 REMARK 3 L33: 10.0178 L12: -4.4584 REMARK 3 L13: 8.6576 L23: 0.6037 REMARK 3 S TENSOR REMARK 3 S11: -0.3646 S12: -1.1372 S13: 0.4292 REMARK 3 S21: 0.1810 S22: 0.1780 S23: 0.7288 REMARK 3 S31: -0.5761 S32: -0.6427 S33: 0.1866 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 14D REMARK 3 ORIGIN FOR THE GROUP (A): 19.8940 5.6020 84.5510 REMARK 3 T TENSOR REMARK 3 T11: 0.0683 T22: 0.1176 REMARK 3 T33: 0.0795 T12: -0.0455 REMARK 3 T13: 0.0092 T23: 0.0579 REMARK 3 L TENSOR REMARK 3 L11: 2.7323 L22: 19.0232 REMARK 3 L33: 8.8793 L12: 0.1562 REMARK 3 L13: 1.4397 L23: 10.4826 REMARK 3 S TENSOR REMARK 3 S11: -0.0142 S12: 0.1353 S13: -0.0094 REMARK 3 S21: -0.0969 S22: 0.1502 S23: -0.6587 REMARK 3 S31: -0.2211 S32: 0.5127 S33: -0.1360 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 14E A 14K REMARK 3 ORIGIN FOR THE GROUP (A): 15.9180 -0.0780 72.2620 REMARK 3 T TENSOR REMARK 3 T11: 0.1311 T22: 0.0883 REMARK 3 T33: 0.1346 T12: -0.0308 REMARK 3 T13: 0.0862 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 15.2732 L22: 9.9733 REMARK 3 L33: 11.6526 L12: -3.0378 REMARK 3 L13: 1.6465 L23: 1.5167 REMARK 3 S TENSOR REMARK 3 S11: 0.2592 S12: 0.8696 S13: 0.6671 REMARK 3 S21: -0.3213 S22: -0.2845 S23: 0.2896 REMARK 3 S31: 0.3393 S32: 0.2519 S33: 0.0252 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 16 B 80 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7700 -7.5720 96.1490 REMARK 3 T TENSOR REMARK 3 T11: 0.1214 T22: 0.1191 REMARK 3 T33: 0.0439 T12: -0.0913 REMARK 3 T13: 0.0066 T23: 0.0394 REMARK 3 L TENSOR REMARK 3 L11: 3.2082 L22: 1.6546 REMARK 3 L33: 1.7946 L12: 1.2517 REMARK 3 L13: 0.9745 L23: 0.3282 REMARK 3 S TENSOR REMARK 3 S11: 0.3211 S12: -0.5665 S13: -0.2784 REMARK 3 S21: 0.3504 S22: -0.2855 S23: 0.0349 REMARK 3 S31: 0.2590 S32: -0.2194 S33: -0.0356 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 81 B 147 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8480 -3.6520 87.2140 REMARK 3 T TENSOR REMARK 3 T11: 0.0622 T22: 0.0718 REMARK 3 T33: 0.0250 T12: -0.0335 REMARK 3 T13: 0.0095 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 3.6114 L22: 1.4095 REMARK 3 L33: 1.8457 L12: 1.2421 REMARK 3 L13: 0.7181 L23: 0.0625 REMARK 3 S TENSOR REMARK 3 S11: 0.0817 S12: -0.2034 S13: 0.1056 REMARK 3 S21: 0.0021 S22: -0.1252 S23: 0.1729 REMARK 3 S31: 0.0592 S32: -0.3119 S33: 0.0435 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 149E B 176 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2010 -14.4370 78.0610 REMARK 3 T TENSOR REMARK 3 T11: 0.1119 T22: 0.0280 REMARK 3 T33: 0.1025 T12: -0.0057 REMARK 3 T13: 0.0636 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 2.6745 L22: 4.3330 REMARK 3 L33: 5.4224 L12: 3.1851 REMARK 3 L13: 1.8597 L23: 2.6972 REMARK 3 S TENSOR REMARK 3 S11: -0.1317 S12: -0.0343 S13: -0.2763 REMARK 3 S21: -0.1885 S22: -0.0324 S23: -0.1906 REMARK 3 S31: 0.2121 S32: -0.2690 S33: 0.1640 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 177 B 246 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4820 -6.4160 79.4190 REMARK 3 T TENSOR REMARK 3 T11: 0.0615 T22: 0.0428 REMARK 3 T33: 0.0141 T12: -0.0240 REMARK 3 T13: 0.0017 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 2.6919 L22: 3.1043 REMARK 3 L33: 2.0830 L12: 1.4318 REMARK 3 L13: 0.3183 L23: -0.1532 REMARK 3 S TENSOR REMARK 3 S11: -0.0172 S12: 0.1789 S13: -0.1448 REMARK 3 S21: -0.1628 S22: -0.0289 S23: 0.0130 REMARK 3 S31: 0.1788 S32: -0.1496 S33: 0.0461 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 5 C 10 REMARK 3 ORIGIN FOR THE GROUP (A): -2.7870 -20.5130 82.2810 REMARK 3 T TENSOR REMARK 3 T11: 0.3603 T22: 0.4508 REMARK 3 T33: 0.4848 T12: -0.0251 REMARK 3 T13: -0.0335 T23: -0.0467 REMARK 3 L TENSOR REMARK 3 L11: 5.9934 L22: 14.6561 REMARK 3 L33: 16.4261 L12: 8.1466 REMARK 3 L13: 9.3606 L23: 10.1916 REMARK 3 S TENSOR REMARK 3 S11: 0.1931 S12: 0.0266 S13: -0.4321 REMARK 3 S21: -0.3659 S22: 0.0956 S23: -1.0305 REMARK 3 S31: 0.7348 S32: -0.0473 S33: -0.2887 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 19 D 28 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6580 -7.1360 109.1980 REMARK 3 T TENSOR REMARK 3 T11: 0.2311 T22: 0.4363 REMARK 3 T33: 0.2060 T12: -0.1432 REMARK 3 T13: 0.0003 T23: 0.1388 REMARK 3 L TENSOR REMARK 3 L11: 16.2168 L22: 4.5107 REMARK 3 L33: 13.1165 L12: -0.1086 REMARK 3 L13: 0.9441 L23: 5.5070 REMARK 3 S TENSOR REMARK 3 S11: 0.0495 S12: -0.2571 S13: 0.6503 REMARK 3 S21: 0.1370 S22: -0.0537 S23: 0.5167 REMARK 3 S31: -0.1116 S32: -0.4259 S33: 0.0041 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5GIM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1300000838. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5419 REMARK 200 MONOCHROMATOR : VARIMAX HF (OSMIC) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19156 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 70.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.13700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 2HGT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 20-25% PEG 8000, PH 7.4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 34.73500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.79000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 34.73500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.79000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1H REMARK 465 PHE A 1G REMARK 465 GLY A 1F REMARK 465 ASP A 14L REMARK 465 GLY A 14M REMARK 465 ARG A 14N REMARK 465 TRP B 148 REMARK 465 THR B 149 REMARK 465 ALA B 149A REMARK 465 ASN B 149B REMARK 465 VAL B 149C REMARK 465 GLY B 149D REMARK 465 GLU B 247 REMARK 465 SER C 1 REMARK 465 GLY C 2 REMARK 465 GLY C 3 REMARK 465 HIS C 4 REMARK 465 ILE D 11 REMARK 465 SER D 12 REMARK 465 LYS D 13 REMARK 465 GLN D 14 REMARK 465 GLY D 15 REMARK 465 LEU D 16 REMARK 465 GLY D 17 REMARK 465 GLY D 18 REMARK 465 ILE D 29 REMARK 465 GLU D 30 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 147 OG1 CG2 REMARK 470 GLU B 218 CG CD OE1 OE2 REMARK 470 LYS B 236 CG CD CE NZ REMARK 470 GLN C 5 CG CD OE1 NE2 REMARK 470 GLU D 22 CG CD OE1 OE2 REMARK 470 SER D 25 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 7 -87.52 -125.76 REMARK 500 TYR B 60A 82.90 -152.57 REMARK 500 ASN B 60G 73.12 -152.09 REMARK 500 ASN B 60G 73.12 -151.99 REMARK 500 HIS B 71 -60.21 -134.07 REMARK 500 ILE B 79 -63.23 -123.99 REMARK 500 ASN B 95 76.97 -103.94 REMARK 500 GLU B 97A -75.90 -129.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 453 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH B 454 DISTANCE = 7.12 ANGSTROMS DBREF 5GIM A 1H 14N UNP P00734 THRB_HUMAN 328 363 DBREF 5GIM B 16 247 UNP P00734 Q6F3E8_AMBVA 364 622 DBREF 5GIM C 1 10 UNP Q6F3E8 Q6F3E8_AMBVA 39 48 DBREF 5GIM D 11 30 UNP Q6F3E8 Q6F3E8_AMBVA 85 104 SEQRES 1 A 36 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO SEQRES 2 A 36 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG SEQRES 3 A 36 GLU LEU LEU GLU SER TYR ILE ASP GLY ARG SEQRES 1 B 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 B 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 B 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 B 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 B 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 B 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 B 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 B 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 B 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 B 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 B 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 B 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 B 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 B 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 B 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 B 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 B 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 B 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 B 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 B 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 C 10 SER GLY GLY HIS GLN THR ALA VAL PRO LYS SEQRES 1 D 20 ILE SER LYS GLN GLY LEU GLY GLY ASP PHE GLU GLU ILE SEQRES 2 D 20 PRO SER ASP GLU ILE ILE GLU FORMUL 5 HOH *185(H2 O) HELIX 1 AA1 PHE A 7 SER A 11 5 5 HELIX 2 AA2 THR A 14B TYR A 14J 1 9 HELIX 3 AA3 ALA B 55 CYS B 58 5 4 HELIX 4 AA4 PRO B 60B ASP B 60E 5 4 HELIX 5 AA5 THR B 60I ASN B 62 5 3 HELIX 6 AA6 ASP B 125 LEU B 130 1 9 HELIX 7 AA7 GLU B 164 SER B 171 1 8 HELIX 8 AA8 LYS B 185 GLY B 186C 5 5 HELIX 9 AA9 LEU B 234 GLY B 246 1 13 HELIX 10 AB1 PRO D 24 ILE D 28 5 5 SHEET 1 AA1 7 SER B 20 ASP B 21 0 SHEET 2 AA1 7 GLN B 156 PRO B 161 -1 O VAL B 157 N SER B 20 SHEET 3 AA1 7 LYS B 135 GLY B 140 -1 N VAL B 138 O VAL B 158 SHEET 4 AA1 7 PRO B 198 LYS B 202 -1 O VAL B 200 N ARG B 137 SHEET 5 AA1 7 TRP B 208 TRP B 216 -1 O TYR B 209 N MET B 201 SHEET 6 AA1 7 GLY B 226 HIS B 230 -1 O PHE B 227 N TRP B 216 SHEET 7 AA1 7 MET B 180 ALA B 183 -1 N PHE B 181 O TYR B 228 SHEET 1 AA2 7 LYS B 81 SER B 83 0 SHEET 2 AA2 7 LEU B 64 ILE B 68 -1 N ILE B 68 O LYS B 81 SHEET 3 AA2 7 GLN B 30 ARG B 35 -1 N PHE B 34 O LEU B 65 SHEET 4 AA2 7 GLU B 39 LEU B 46 -1 O GLU B 39 N ARG B 35 SHEET 5 AA2 7 TRP B 51 THR B 54 -1 O LEU B 53 N SER B 45 SHEET 6 AA2 7 ALA B 104 LEU B 108 -1 O MET B 106 N VAL B 52 SHEET 7 AA2 7 LEU B 85 ILE B 90 -1 N TYR B 89 O LEU B 105 SHEET 1 AA3 2 LEU B 60 TYR B 60A 0 SHEET 2 AA3 2 LYS B 60F ASN B 60G-1 O LYS B 60F N TYR B 60A SSBOND 1 CYS A 1 CYS B 122 1555 1555 2.04 SSBOND 2 CYS B 42 CYS B 58 1555 1555 2.01 SSBOND 3 CYS B 168 CYS B 182 1555 1555 2.02 SSBOND 4 CYS B 191 CYS B 220 1555 1555 2.05 CISPEP 1 SER B 36A PRO B 37 0 -15.42 CRYST1 69.470 71.580 71.720 90.00 99.86 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014395 0.000000 0.002502 0.00000 SCALE2 0.000000 0.013970 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014152 0.00000