HEADER TRANSPORT PROTEIN 26-JUN-16 5GJ0 OBSLTE 11-OCT-17 5GJ0 5Y89 TITLE PERIPLASMIC HEME-BINDING PROTEIN BHUT ONE-HEME BOUND FORM (HOLO-1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE HEMIN TRANSPORT SYSTEM, SUBSTRATE-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HEME BINDING DOMAIN, UNP RESIDUES 40-305; COMPND 5 SYNONYM: PERIPLASMIC HEME-BINDING PROTEIN BHUT; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA CENOCEPACIA J2315; SOURCE 3 ORGANISM_TAXID: 216591; SOURCE 4 STRAIN: J2315; SOURCE 5 GENE: HMUT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS METAL TRANSPORT, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.NAKAMURA,Y.NAOE,M.M.RAHMAN,Y.SHIRO,H.SUGIMOTO REVDAT 2 11-OCT-17 5GJ0 1 OBSLTE REVDAT 1 28-JUN-17 5GJ0 0 JRNL AUTH Y.NAOE,N.NAKAMURA,M.M.RAHMAN,A.DOI,H.NAKAMURA,Y.SHIRO, JRNL AUTH 2 H.SUGIMOTO JRNL TITL STRUCTURAL BASIS FOR CATURE AND TRANSFER OF HEME BY JRNL TITL 2 PERIPLASMIC HEME-BINDING PROTEINS IN BACTERIAL HEME JRNL TITL 3 ACQUISITION SYSTEM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 50964 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2706 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3671 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 198 REMARK 3 BIN FREE R VALUE : 0.2390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3902 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 109 REMARK 3 SOLVENT ATOMS : 176 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.50000 REMARK 3 B22 (A**2) : -0.50000 REMARK 3 B33 (A**2) : 1.62000 REMARK 3 B12 (A**2) : -0.50000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.178 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.849 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4097 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4012 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5611 ; 1.357 ; 2.009 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9127 ; 1.040 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 534 ; 5.158 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;30.743 ;21.484 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 593 ;14.944 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 47 ;20.585 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 648 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4736 ; 0.010 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): 947 ; 0.011 ; 0.022 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 39 305 B 39 305 15083 0.120 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 39 A 305 REMARK 3 RESIDUE RANGE : A 401 A 402 REMARK 3 RESIDUE RANGE : B 401 B 401 REMARK 3 ORIGIN FOR THE GROUP (A): 65.2535 111.0558 3.6919 REMARK 3 T TENSOR REMARK 3 T11: 0.2400 T22: 0.2714 REMARK 3 T33: 0.2078 T12: 0.1757 REMARK 3 T13: 0.0549 T23: 0.1736 REMARK 3 L TENSOR REMARK 3 L11: 2.4496 L22: 1.1246 REMARK 3 L33: 1.0936 L12: -0.4885 REMARK 3 L13: 0.2696 L23: 0.3096 REMARK 3 S TENSOR REMARK 3 S11: 0.0534 S12: 0.3269 S13: 0.6058 REMARK 3 S21: -0.3123 S22: -0.2163 S23: -0.2306 REMARK 3 S31: -0.3128 S32: 0.0268 S33: 0.1628 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 39 B 305 REMARK 3 RESIDUE RANGE : B 402 B 405 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9495 113.3716 19.9830 REMARK 3 T TENSOR REMARK 3 T11: 0.1367 T22: 0.1514 REMARK 3 T33: 0.0309 T12: 0.0730 REMARK 3 T13: -0.0492 T23: -0.0328 REMARK 3 L TENSOR REMARK 3 L11: 0.4509 L22: 0.5079 REMARK 3 L33: 0.9896 L12: -0.1182 REMARK 3 L13: -0.2831 L23: 0.2754 REMARK 3 S TENSOR REMARK 3 S11: 0.0653 S12: -0.0856 S13: 0.0158 REMARK 3 S21: 0.0740 S22: 0.0869 S23: -0.0751 REMARK 3 S31: 0.1530 S32: 0.1538 S33: -0.1522 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5GJ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1300000857. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53708 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 22.10 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 21.00 REMARK 200 R MERGE FOR SHELL (I) : 0.86000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE, PH 4.8, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.24533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.49067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.86800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 98.11333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.62267 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.24533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 78.49067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 98.11333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 58.86800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 19.62267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 533 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 35 REMARK 465 PRO A 36 REMARK 465 LEU A 37 REMARK 465 GLY A 38 REMARK 465 GLY B 35 REMARK 465 PRO B 36 REMARK 465 LEU B 37 REMARK 465 GLY B 38 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 76 -161.76 -79.19 REMARK 500 ALA A 90 48.15 -140.95 REMARK 500 ALA A 181 -123.98 -124.33 REMARK 500 ASN A 191 63.69 -158.10 REMARK 500 HIS A 224 -142.65 70.49 REMARK 500 ALA B 90 47.11 -141.47 REMARK 500 ALA B 181 -121.49 -124.73 REMARK 500 ASN B 191 60.70 -158.40 REMARK 500 HIS B 224 -144.12 68.49 REMARK 500 ALA B 265 40.37 -96.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 87 OH REMARK 620 2 HEM A 401 NA 88.6 REMARK 620 3 HEM A 401 NB 83.2 88.9 REMARK 620 4 HEM A 401 NC 92.2 178.3 89.8 REMARK 620 5 HEM A 401 ND 98.8 90.8 177.9 90.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 87 OH REMARK 620 2 HEM B 402 NA 87.0 REMARK 620 3 HEM B 402 NB 83.4 89.2 REMARK 620 4 HEM B 402 NC 94.6 178.2 90.1 REMARK 620 5 HEM B 402 ND 98.8 90.4 177.7 90.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GIZ RELATED DB: PDB REMARK 900 RELATED ID: 5GJ1 RELATED DB: PDB REMARK 900 RELATED ID: 5GJ2 RELATED DB: PDB REMARK 900 RELATED ID: 5GJ3 RELATED DB: PDB DBREF 5GJ0 A 40 305 UNP B4EKB3 B4EKB3_BURCJ 40 305 DBREF 5GJ0 B 40 305 UNP B4EKB3 B4EKB3_BURCJ 40 305 SEQADV 5GJ0 GLY A 35 UNP B4EKB3 EXPRESSION TAG SEQADV 5GJ0 PRO A 36 UNP B4EKB3 EXPRESSION TAG SEQADV 5GJ0 LEU A 37 UNP B4EKB3 EXPRESSION TAG SEQADV 5GJ0 GLY A 38 UNP B4EKB3 EXPRESSION TAG SEQADV 5GJ0 SER A 39 UNP B4EKB3 EXPRESSION TAG SEQADV 5GJ0 GLY B 35 UNP B4EKB3 EXPRESSION TAG SEQADV 5GJ0 PRO B 36 UNP B4EKB3 EXPRESSION TAG SEQADV 5GJ0 LEU B 37 UNP B4EKB3 EXPRESSION TAG SEQADV 5GJ0 GLY B 38 UNP B4EKB3 EXPRESSION TAG SEQADV 5GJ0 SER B 39 UNP B4EKB3 EXPRESSION TAG SEQRES 1 A 271 GLY PRO LEU GLY SER LYS ARG VAL ILE VAL ILE GLY GLY SEQRES 2 A 271 ALA LEU ALA GLU THR ALA PHE ALA LEU GLY GLY ALA GLU SEQRES 3 A 271 THR PRO ARG TYR ARG LEU VAL GLY ALA ASP THR THR CYS SEQRES 4 A 271 THR TYR PRO ASP ALA ALA LYS ARG LEU PRO LYS VAL GLY SEQRES 5 A 271 TYR GLN ARG ALA LEU SER ALA GLU GLY LEU LEU SER LEU SEQRES 6 A 271 ARG PRO ASP LEU VAL LEU ALA SER ALA GLU ALA GLY PRO SEQRES 7 A 271 PRO THR ALA ILE ALA GLN VAL LYS GLY ALA GLY VAL THR SEQRES 8 A 271 VAL THR THR PHE ASP GLU ARG HIS ASP VAL GLU SER VAL SEQRES 9 A 271 ARG ALA LYS ILE THR GLY VAL ALA GLN ALA LEU ASP VAL SEQRES 10 A 271 ARG ASP ALA GLY ALA ALA LEU LEU GLN ARG PHE ASP ARG SEQRES 11 A 271 ASP TRP GLN ALA ALA ARG ASP ALA VAL ALA ALA ARG VAL SEQRES 12 A 271 PRO GLY GLY ALA GLN PRO PRO ARG VAL LEU PHE VAL LEU SEQRES 13 A 271 ASN HIS THR GLY THR GLN ALA LEU VAL ALA GLY GLN ARG SEQRES 14 A 271 THR ALA ALA ASP ALA MET ILE ARG TYR ALA GLY ALA ARG SEQRES 15 A 271 ASN ALA MET GLN GLY PHE ASP HIS TYR LYS PRO LEU THR SEQRES 16 A 271 THR GLU ALA LEU ALA ALA ALA ALA PRO ASP VAL VAL LEU SEQRES 17 A 271 ILE SER ASP GLU GLY LEU ALA ALA VAL GLY GLY HIS ALA SEQRES 18 A 271 ALA LEU LEU ALA THR PRO GLY PHE GLY ALA THR PRO ALA SEQRES 19 A 271 GLY ARG ALA ARG ARG VAL VAL SER LEU ASP ALA LEU PHE SEQRES 20 A 271 LEU LEU GLY PHE GLY PRO ARG LEU PRO LEU ALA VAL THR SEQRES 21 A 271 THR LEU HIS ARG ARG LEU SER ASP ALA LEU ALA SEQRES 1 B 271 GLY PRO LEU GLY SER LYS ARG VAL ILE VAL ILE GLY GLY SEQRES 2 B 271 ALA LEU ALA GLU THR ALA PHE ALA LEU GLY GLY ALA GLU SEQRES 3 B 271 THR PRO ARG TYR ARG LEU VAL GLY ALA ASP THR THR CYS SEQRES 4 B 271 THR TYR PRO ASP ALA ALA LYS ARG LEU PRO LYS VAL GLY SEQRES 5 B 271 TYR GLN ARG ALA LEU SER ALA GLU GLY LEU LEU SER LEU SEQRES 6 B 271 ARG PRO ASP LEU VAL LEU ALA SER ALA GLU ALA GLY PRO SEQRES 7 B 271 PRO THR ALA ILE ALA GLN VAL LYS GLY ALA GLY VAL THR SEQRES 8 B 271 VAL THR THR PHE ASP GLU ARG HIS ASP VAL GLU SER VAL SEQRES 9 B 271 ARG ALA LYS ILE THR GLY VAL ALA GLN ALA LEU ASP VAL SEQRES 10 B 271 ARG ASP ALA GLY ALA ALA LEU LEU GLN ARG PHE ASP ARG SEQRES 11 B 271 ASP TRP GLN ALA ALA ARG ASP ALA VAL ALA ALA ARG VAL SEQRES 12 B 271 PRO GLY GLY ALA GLN PRO PRO ARG VAL LEU PHE VAL LEU SEQRES 13 B 271 ASN HIS THR GLY THR GLN ALA LEU VAL ALA GLY GLN ARG SEQRES 14 B 271 THR ALA ALA ASP ALA MET ILE ARG TYR ALA GLY ALA ARG SEQRES 15 B 271 ASN ALA MET GLN GLY PHE ASP HIS TYR LYS PRO LEU THR SEQRES 16 B 271 THR GLU ALA LEU ALA ALA ALA ALA PRO ASP VAL VAL LEU SEQRES 17 B 271 ILE SER ASP GLU GLY LEU ALA ALA VAL GLY GLY HIS ALA SEQRES 18 B 271 ALA LEU LEU ALA THR PRO GLY PHE GLY ALA THR PRO ALA SEQRES 19 B 271 GLY ARG ALA ARG ARG VAL VAL SER LEU ASP ALA LEU PHE SEQRES 20 B 271 LEU LEU GLY PHE GLY PRO ARG LEU PRO LEU ALA VAL THR SEQRES 21 B 271 THR LEU HIS ARG ARG LEU SER ASP ALA LEU ALA HET HEM A 401 43 HET ACT A 402 4 HET SO4 B 401 5 HET HEM B 402 43 HET ACT B 403 4 HET SO4 B 404 5 HET SO4 B 405 5 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM ACT ACETATE ION HETNAM SO4 SULFATE ION HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 5 SO4 3(O4 S 2-) FORMUL 10 HOH *176(H2 O) HELIX 1 AA1 GLY A 46 LEU A 56 1 11 HELIX 2 AA2 PRO A 76 LEU A 82 1 7 HELIX 3 AA3 SER A 92 SER A 98 1 7 HELIX 4 AA4 PRO A 112 ALA A 122 1 11 HELIX 5 AA5 ASP A 134 ASP A 150 1 17 HELIX 6 AA6 VAL A 151 ALA A 175 1 25 HELIX 7 AA7 THR A 204 ALA A 213 1 10 HELIX 8 AA8 THR A 229 ALA A 237 1 9 HELIX 9 AA9 ASP A 245 GLY A 252 1 8 HELIX 10 AB1 GLY A 253 ALA A 259 1 7 HELIX 11 AB2 GLY A 262 ALA A 265 5 4 HELIX 12 AB3 THR A 266 ALA A 271 1 6 HELIX 13 AB4 ASP A 278 GLY A 284 1 7 HELIX 14 AB5 ARG A 288 LEU A 304 1 17 HELIX 15 AB6 GLY B 46 LEU B 56 1 11 HELIX 16 AB7 PRO B 76 LEU B 82 1 7 HELIX 17 AB8 SER B 92 SER B 98 1 7 HELIX 18 AB9 PRO B 112 ALA B 122 1 11 HELIX 19 AC1 ASP B 134 LEU B 149 1 16 HELIX 20 AC2 VAL B 151 ALA B 175 1 25 HELIX 21 AC3 THR B 204 ALA B 213 1 10 HELIX 22 AC4 THR B 229 ALA B 237 1 9 HELIX 23 AC5 ASP B 245 VAL B 251 1 7 HELIX 24 AC6 GLY B 253 THR B 260 1 8 HELIX 25 AC7 THR B 266 ALA B 271 1 6 HELIX 26 AC8 ASP B 278 GLY B 284 1 7 HELIX 27 AC9 ARG B 288 ALA B 305 1 18 SHEET 1 AA1 4 TYR A 64 ALA A 69 0 SHEET 2 AA1 4 LYS A 40 ILE A 45 1 N VAL A 42 O ARG A 65 SHEET 3 AA1 4 LEU A 103 SER A 107 1 O LEU A 105 N ILE A 45 SHEET 4 AA1 4 THR A 125 PHE A 129 1 O THR A 127 N VAL A 104 SHEET 1 AA2 4 ARG A 216 ASN A 217 0 SHEET 2 AA2 4 ARG A 185 LEU A 190 1 N VAL A 186 O ARG A 216 SHEET 3 AA2 4 LEU A 198 ALA A 200 -1 O LEU A 198 N LEU A 190 SHEET 4 AA2 4 TYR A 225 PRO A 227 -1 O LYS A 226 N VAL A 199 SHEET 1 AA3 4 ARG A 216 ASN A 217 0 SHEET 2 AA3 4 ARG A 185 LEU A 190 1 N VAL A 186 O ARG A 216 SHEET 3 AA3 4 VAL A 240 SER A 244 1 O LEU A 242 N LEU A 187 SHEET 4 AA3 4 VAL A 274 LEU A 277 1 O VAL A 275 N VAL A 241 SHEET 1 AA4 4 TYR B 64 ALA B 69 0 SHEET 2 AA4 4 LYS B 40 ILE B 45 1 N VAL B 42 O VAL B 67 SHEET 3 AA4 4 LEU B 103 SER B 107 1 O LEU B 105 N ILE B 45 SHEET 4 AA4 4 THR B 125 PHE B 129 1 O THR B 127 N VAL B 104 SHEET 1 AA5 4 ARG B 216 ASN B 217 0 SHEET 2 AA5 4 ARG B 185 LEU B 190 1 N VAL B 186 O ARG B 216 SHEET 3 AA5 4 LEU B 198 ALA B 200 -1 O LEU B 198 N LEU B 190 SHEET 4 AA5 4 TYR B 225 PRO B 227 -1 O LYS B 226 N VAL B 199 SHEET 1 AA6 4 ARG B 216 ASN B 217 0 SHEET 2 AA6 4 ARG B 185 LEU B 190 1 N VAL B 186 O ARG B 216 SHEET 3 AA6 4 VAL B 240 SER B 244 1 O LEU B 242 N LEU B 187 SHEET 4 AA6 4 VAL B 274 LEU B 277 1 O VAL B 275 N VAL B 241 LINK OH TYR A 87 FE HEM A 401 1555 1555 2.00 LINK OH TYR B 87 FE HEM B 402 1555 1555 1.89 CISPEP 1 TYR A 75 PRO A 76 0 -3.29 CISPEP 2 GLY A 111 PRO A 112 0 6.75 CISPEP 3 TYR B 75 PRO B 76 0 -2.96 CISPEP 4 GLY B 111 PRO B 112 0 4.71 SITE 1 AC1 15 GLY A 47 THR A 72 TYR A 87 GLN A 88 SITE 2 AC1 15 ARG A 89 LEU A 190 HIS A 192 THR A 193 SITE 3 AC1 15 THR A 204 ALA A 205 ALA A 206 TYR A 225 SITE 4 AC1 15 ACT A 402 HOH A 502 HOH A 508 SITE 1 AC2 7 PHE A 188 LEU A 190 HIS A 192 SER A 244 SITE 2 AC2 7 ALA A 279 HEM A 401 HOH A 513 SITE 1 AC3 5 SER A 98 THR A 229 THR A 230 HOH A 519 SITE 2 AC3 5 ARG B 161 SITE 1 AC4 15 GLY B 47 THR B 72 TYR B 87 GLN B 88 SITE 2 AC4 15 ARG B 89 HIS B 192 THR B 193 THR B 204 SITE 3 AC4 15 ALA B 205 ALA B 206 TYR B 225 ACT B 403 SITE 4 AC4 15 HOH B 519 HOH B 532 HOH B 534 SITE 1 AC5 7 PHE B 188 LEU B 190 HIS B 192 SER B 244 SITE 2 AC5 7 ALA B 279 HEM B 402 HOH B 539 SITE 1 AC6 4 ARG B 185 ARG B 216 GLN B 220 HOH B 507 SITE 1 AC7 3 ARG B 298 ARG B 299 ASP B 302 CRYST1 199.166 199.166 117.736 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005021 0.002899 0.000000 0.00000 SCALE2 0.000000 0.005798 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008494 0.00000