HEADER TRANSPORT PROTEIN 26-JUN-16 5GJ1 OBSLTE 11-OCT-17 5GJ1 5Y8A TITLE PERIPLASMIC HEME-BINDING PROTEIN BHUT IN TWO-HEME BOUND FORM (HOLO-2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE HEMIN TRANSPORT SYSTEM, SUBSTRATE-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HEME BINDING DOMAIN, UNP RESIDUES 40-305; COMPND 5 SYNONYM: PERIPLASMIC HEME-BINDING PROTEIN BHUT; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA CENOCEPACIA J2315; SOURCE 3 ORGANISM_TAXID: 216591; SOURCE 4 STRAIN: J2315; SOURCE 5 GENE: HMUT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS METAL TRANSPORT, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.NAKAMURA,Y.NAOE,M.M.RAHMAN,Y.SHIRO,H.SUGIMOTO REVDAT 2 11-OCT-17 5GJ1 1 OBSLTE REVDAT 1 28-JUN-17 5GJ1 0 JRNL AUTH Y.NAOE,N.NAKAMURA,M.M.RAHMAN,A.DOI,H.NAKAMURA,Y.SHIRO, JRNL AUTH 2 H.SUGIMOTO JRNL TITL STRUCTURAL BASIS FOR CATURE AND TRANSFER OF HEME BY JRNL TITL 2 PERIPLASMIC HEME-BINDING PROTEINS IN BACTERIAL HEME JRNL TITL 3 ACQUISITION SYSTEM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 71686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3767 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4950 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 272 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3927 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 172 REMARK 3 SOLVENT ATOMS : 351 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.74000 REMARK 3 B22 (A**2) : 0.44000 REMARK 3 B33 (A**2) : 0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.55000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.534 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4494 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4360 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6231 ; 1.561 ; 2.057 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9918 ; 1.138 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 581 ; 4.809 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;32.870 ;21.472 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 633 ;11.372 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;14.408 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 694 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5258 ; 0.016 ; 0.024 REMARK 3 GENERAL PLANES OTHERS (A): 1078 ; 0.018 ; 0.024 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 38 304 B 38 304 15516 0.120 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 305 REMARK 3 RESIDUE RANGE : A 401 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): 257.5210 -24.7890 -37.1090 REMARK 3 T TENSOR REMARK 3 T11: 0.0512 T22: 0.0309 REMARK 3 T33: 0.0086 T12: 0.0024 REMARK 3 T13: 0.0085 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.3695 L22: 0.1844 REMARK 3 L33: 0.1518 L12: 0.1760 REMARK 3 L13: 0.0609 L23: 0.0256 REMARK 3 S TENSOR REMARK 3 S11: -0.0221 S12: 0.0060 S13: 0.0213 REMARK 3 S21: 0.0071 S22: -0.0012 S23: 0.0037 REMARK 3 S31: -0.0229 S32: -0.0554 S33: 0.0234 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 38 B 305 REMARK 3 RESIDUE RANGE : B 401 B 401 REMARK 3 ORIGIN FOR THE GROUP (A): 259.7830 -43.8600 -16.2490 REMARK 3 T TENSOR REMARK 3 T11: 0.0445 T22: 0.0240 REMARK 3 T33: 0.0131 T12: -0.0109 REMARK 3 T13: 0.0211 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.2988 L22: 0.0981 REMARK 3 L33: 0.2165 L12: -0.1711 REMARK 3 L13: -0.0573 L23: 0.0379 REMARK 3 S TENSOR REMARK 3 S11: 0.0102 S12: 0.0162 S13: -0.0095 REMARK 3 S21: -0.0049 S22: -0.0107 S23: 0.0053 REMARK 3 S31: 0.0368 S32: -0.0719 S33: 0.0005 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5GJ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1300000858. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75455 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.39600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2R7A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 3350, 0.23 M CALCIUM ACETATE, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 114.49050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.82800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 114.49050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.82800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 646 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 648 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 35 REMARK 465 PRO B 36 REMARK 465 LEU B 37 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 76 -167.41 -78.15 REMARK 500 ALA A 181 -122.78 -136.12 REMARK 500 HIS A 192 51.63 -145.84 REMARK 500 THR A 193 -71.36 -52.31 REMARK 500 HIS A 224 -148.92 67.88 REMARK 500 PRO B 76 -169.66 -75.16 REMARK 500 ALA B 90 51.63 -140.95 REMARK 500 ALA B 181 -124.48 -135.49 REMARK 500 HIS B 192 52.50 -147.43 REMARK 500 THR B 193 -71.58 -52.49 REMARK 500 HIS B 224 -150.89 66.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 679 DISTANCE = 6.50 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 87 OH REMARK 620 2 HEM A 401 NA 90.8 REMARK 620 3 HEM A 401 NB 89.9 89.8 REMARK 620 4 HEM A 401 NC 95.9 173.3 89.3 REMARK 620 5 HEM A 401 ND 97.9 90.3 172.2 89.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 87 OH REMARK 620 2 HEM B 401 NA 102.4 REMARK 620 3 HEM B 401 NB 94.9 87.4 REMARK 620 4 HEM B 401 NC 78.1 175.7 88.3 REMARK 620 5 HEM B 401 ND 87.2 92.0 177.9 92.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 87 OH REMARK 620 2 HEM B 401 NA 71.4 REMARK 620 3 HEM B 401 NB 90.1 53.4 REMARK 620 4 HEM B 401 NC 150.5 137.6 111.5 REMARK 620 5 HEM B 401 ND 80.0 52.5 104.3 111.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GIZ RELATED DB: PDB REMARK 900 RELATED ID: 5GJ0 RELATED DB: PDB REMARK 900 RELATED ID: 5GJ2 RELATED DB: PDB REMARK 900 RELATED ID: 5GJ3 RELATED DB: PDB DBREF 5GJ1 A 40 305 UNP B4EKB3 B4EKB3_BURCJ 40 305 DBREF 5GJ1 B 40 305 UNP B4EKB3 B4EKB3_BURCJ 40 305 SEQADV 5GJ1 GLY A 35 UNP B4EKB3 EXPRESSION TAG SEQADV 5GJ1 PRO A 36 UNP B4EKB3 EXPRESSION TAG SEQADV 5GJ1 LEU A 37 UNP B4EKB3 EXPRESSION TAG SEQADV 5GJ1 GLY A 38 UNP B4EKB3 EXPRESSION TAG SEQADV 5GJ1 SER A 39 UNP B4EKB3 EXPRESSION TAG SEQADV 5GJ1 GLY B 35 UNP B4EKB3 EXPRESSION TAG SEQADV 5GJ1 PRO B 36 UNP B4EKB3 EXPRESSION TAG SEQADV 5GJ1 LEU B 37 UNP B4EKB3 EXPRESSION TAG SEQADV 5GJ1 GLY B 38 UNP B4EKB3 EXPRESSION TAG SEQADV 5GJ1 SER B 39 UNP B4EKB3 EXPRESSION TAG SEQRES 1 A 271 GLY PRO LEU GLY SER LYS ARG VAL ILE VAL ILE GLY GLY SEQRES 2 A 271 ALA LEU ALA GLU THR ALA PHE ALA LEU GLY GLY ALA GLU SEQRES 3 A 271 THR PRO ARG TYR ARG LEU VAL GLY ALA ASP THR THR CYS SEQRES 4 A 271 THR TYR PRO ASP ALA ALA LYS ARG LEU PRO LYS VAL GLY SEQRES 5 A 271 TYR GLN ARG ALA LEU SER ALA GLU GLY LEU LEU SER LEU SEQRES 6 A 271 ARG PRO ASP LEU VAL LEU ALA SER ALA GLU ALA GLY PRO SEQRES 7 A 271 PRO THR ALA ILE ALA GLN VAL LYS GLY ALA GLY VAL THR SEQRES 8 A 271 VAL THR THR PHE ASP GLU ARG HIS ASP VAL GLU SER VAL SEQRES 9 A 271 ARG ALA LYS ILE THR GLY VAL ALA GLN ALA LEU ASP VAL SEQRES 10 A 271 ARG ASP ALA GLY ALA ALA LEU LEU GLN ARG PHE ASP ARG SEQRES 11 A 271 ASP TRP GLN ALA ALA ARG ASP ALA VAL ALA ALA ARG VAL SEQRES 12 A 271 PRO GLY GLY ALA GLN PRO PRO ARG VAL LEU PHE VAL LEU SEQRES 13 A 271 ASN HIS THR GLY THR GLN ALA LEU VAL ALA GLY GLN ARG SEQRES 14 A 271 THR ALA ALA ASP ALA MET ILE ARG TYR ALA GLY ALA ARG SEQRES 15 A 271 ASN ALA MET GLN GLY PHE ASP HIS TYR LYS PRO LEU THR SEQRES 16 A 271 THR GLU ALA LEU ALA ALA ALA ALA PRO ASP VAL VAL LEU SEQRES 17 A 271 ILE SER ASP GLU GLY LEU ALA ALA VAL GLY GLY HIS ALA SEQRES 18 A 271 ALA LEU LEU ALA THR PRO GLY PHE GLY ALA THR PRO ALA SEQRES 19 A 271 GLY ARG ALA ARG ARG VAL VAL SER LEU ASP ALA LEU PHE SEQRES 20 A 271 LEU LEU GLY PHE GLY PRO ARG LEU PRO LEU ALA VAL THR SEQRES 21 A 271 THR LEU HIS ARG ARG LEU SER ASP ALA LEU ALA SEQRES 1 B 271 GLY PRO LEU GLY SER LYS ARG VAL ILE VAL ILE GLY GLY SEQRES 2 B 271 ALA LEU ALA GLU THR ALA PHE ALA LEU GLY GLY ALA GLU SEQRES 3 B 271 THR PRO ARG TYR ARG LEU VAL GLY ALA ASP THR THR CYS SEQRES 4 B 271 THR TYR PRO ASP ALA ALA LYS ARG LEU PRO LYS VAL GLY SEQRES 5 B 271 TYR GLN ARG ALA LEU SER ALA GLU GLY LEU LEU SER LEU SEQRES 6 B 271 ARG PRO ASP LEU VAL LEU ALA SER ALA GLU ALA GLY PRO SEQRES 7 B 271 PRO THR ALA ILE ALA GLN VAL LYS GLY ALA GLY VAL THR SEQRES 8 B 271 VAL THR THR PHE ASP GLU ARG HIS ASP VAL GLU SER VAL SEQRES 9 B 271 ARG ALA LYS ILE THR GLY VAL ALA GLN ALA LEU ASP VAL SEQRES 10 B 271 ARG ASP ALA GLY ALA ALA LEU LEU GLN ARG PHE ASP ARG SEQRES 11 B 271 ASP TRP GLN ALA ALA ARG ASP ALA VAL ALA ALA ARG VAL SEQRES 12 B 271 PRO GLY GLY ALA GLN PRO PRO ARG VAL LEU PHE VAL LEU SEQRES 13 B 271 ASN HIS THR GLY THR GLN ALA LEU VAL ALA GLY GLN ARG SEQRES 14 B 271 THR ALA ALA ASP ALA MET ILE ARG TYR ALA GLY ALA ARG SEQRES 15 B 271 ASN ALA MET GLN GLY PHE ASP HIS TYR LYS PRO LEU THR SEQRES 16 B 271 THR GLU ALA LEU ALA ALA ALA ALA PRO ASP VAL VAL LEU SEQRES 17 B 271 ILE SER ASP GLU GLY LEU ALA ALA VAL GLY GLY HIS ALA SEQRES 18 B 271 ALA LEU LEU ALA THR PRO GLY PHE GLY ALA THR PRO ALA SEQRES 19 B 271 GLY ARG ALA ARG ARG VAL VAL SER LEU ASP ALA LEU PHE SEQRES 20 B 271 LEU LEU GLY PHE GLY PRO ARG LEU PRO LEU ALA VAL THR SEQRES 21 B 271 THR LEU HIS ARG ARG LEU SER ASP ALA LEU ALA HET HEM A 401 43 HET HEM A 402 43 HET HEM B 401 86 HET HEM B 402 86 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM 4(C34 H32 FE N4 O4) FORMUL 7 HOH *351(H2 O) HELIX 1 AA1 GLY A 46 LEU A 56 1 11 HELIX 2 AA2 PRO A 76 LEU A 82 1 7 HELIX 3 AA3 SER A 92 SER A 98 1 7 HELIX 4 AA4 PRO A 112 ALA A 122 1 11 HELIX 5 AA5 ASP A 134 LEU A 149 1 16 HELIX 6 AA6 VAL A 151 ARG A 176 1 26 HELIX 7 AA7 THR A 204 ALA A 213 1 10 HELIX 8 AA8 THR A 229 ALA A 237 1 9 HELIX 9 AA9 ASP A 245 GLY A 252 1 8 HELIX 10 AB1 GLY A 253 THR A 260 1 8 HELIX 11 AB2 GLY A 262 ALA A 265 5 4 HELIX 12 AB3 THR A 266 ARG A 272 1 7 HELIX 13 AB4 ASP A 278 GLY A 284 1 7 HELIX 14 AB5 ARG A 288 LEU A 304 1 17 HELIX 15 AB6 GLY B 46 GLY B 58 1 13 HELIX 16 AB7 PRO B 76 ARG B 81 1 6 HELIX 17 AB8 SER B 92 LEU B 99 1 8 HELIX 18 AB9 PRO B 112 ALA B 122 1 11 HELIX 19 AC1 ASP B 134 ASP B 150 1 17 HELIX 20 AC2 VAL B 151 ARG B 176 1 26 HELIX 21 AC3 THR B 204 ALA B 213 1 10 HELIX 22 AC4 THR B 229 ALA B 237 1 9 HELIX 23 AC5 ASP B 245 GLY B 252 1 8 HELIX 24 AC6 GLY B 253 THR B 260 1 8 HELIX 25 AC7 GLY B 262 ALA B 265 5 4 HELIX 26 AC8 THR B 266 ARG B 272 1 7 HELIX 27 AC9 ASP B 278 GLY B 284 1 7 HELIX 28 AD1 ARG B 288 LEU B 304 1 17 SHEET 1 AA1 4 TYR A 64 ALA A 69 0 SHEET 2 AA1 4 LYS A 40 ILE A 45 1 N VAL A 42 O ARG A 65 SHEET 3 AA1 4 LEU A 103 ALA A 106 1 O LEU A 105 N ILE A 45 SHEET 4 AA1 4 THR A 125 THR A 128 1 O THR A 127 N ALA A 106 SHEET 1 AA2 4 ARG A 216 ASN A 217 0 SHEET 2 AA2 4 ARG A 185 ASN A 191 1 N VAL A 186 O ARG A 216 SHEET 3 AA2 4 LEU A 198 ALA A 200 -1 O LEU A 198 N ASN A 191 SHEET 4 AA2 4 TYR A 225 PRO A 227 -1 O LYS A 226 N VAL A 199 SHEET 1 AA3 4 ARG A 216 ASN A 217 0 SHEET 2 AA3 4 ARG A 185 ASN A 191 1 N VAL A 186 O ARG A 216 SHEET 3 AA3 4 VAL A 240 SER A 244 1 O LEU A 242 N LEU A 187 SHEET 4 AA3 4 VAL A 274 LEU A 277 1 O VAL A 275 N VAL A 241 SHEET 1 AA4 4 TYR B 64 ALA B 69 0 SHEET 2 AA4 4 LYS B 40 ILE B 45 1 N VAL B 42 O ARG B 65 SHEET 3 AA4 4 LEU B 103 SER B 107 1 O LEU B 105 N ILE B 45 SHEET 4 AA4 4 THR B 125 PHE B 129 1 O THR B 127 N VAL B 104 SHEET 1 AA5 2 GLY B 86 TYR B 87 0 SHEET 2 AA5 2 ALA B 90 LEU B 91 -1 O ALA B 90 N TYR B 87 SHEET 1 AA6 4 ARG B 216 ASN B 217 0 SHEET 2 AA6 4 ARG B 185 ASN B 191 1 N VAL B 186 O ARG B 216 SHEET 3 AA6 4 LEU B 198 ALA B 200 -1 O LEU B 198 N ASN B 191 SHEET 4 AA6 4 TYR B 225 PRO B 227 -1 O LYS B 226 N VAL B 199 SHEET 1 AA7 4 ARG B 216 ASN B 217 0 SHEET 2 AA7 4 ARG B 185 ASN B 191 1 N VAL B 186 O ARG B 216 SHEET 3 AA7 4 VAL B 240 SER B 244 1 O LEU B 242 N LEU B 187 SHEET 4 AA7 4 VAL B 274 LEU B 277 1 O VAL B 275 N VAL B 241 LINK OH TYR A 87 FE HEM A 401 1555 1555 1.98 LINK OH TYR B 87 FE AHEM B 401 1555 1555 2.44 LINK OH TYR B 87 FE BHEM B 401 1555 1555 2.18 CISPEP 1 TYR A 75 PRO A 76 0 -5.97 CISPEP 2 GLY A 111 PRO A 112 0 5.60 CISPEP 3 TYR B 75 PRO B 76 0 -4.13 CISPEP 4 GLY B 111 PRO B 112 0 7.17 SITE 1 AC1 9 THR A 71 THR A 72 TYR A 87 GLN A 88 SITE 2 AC1 9 ARG A 89 GLU A 109 HEM A 402 HOH A 508 SITE 3 AC1 9 HOH A 638 SITE 1 AC2 3 LEU A 190 TYR A 225 HEM A 401 SITE 1 AC3 4 THR B 71 TYR B 87 ARG B 89 HEM B 402 SITE 1 AC4 9 LEU B 190 LEU B 198 THR B 204 ALA B 205 SITE 2 AC4 9 ALA B 206 HIS B 224 TYR B 225 LEU B 283 SITE 3 AC4 9 HEM B 401 CRYST1 228.981 45.656 46.364 90.00 92.78 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004367 0.000000 0.000212 0.00000 SCALE2 0.000000 0.021903 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021594 0.00000