HEADER PROTEIN BINDING 30-JUN-16 5GJL TITLE SOLUTION STRUCTURE OF SUMO FROM PLASMODIUM FALCIPARUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-98; COMPND 5 SYNONYM: PFSUMO; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM (ISOLATE DD2); SOURCE 3 ORGANISM_TAXID: 57267; SOURCE 4 STRAIN: ISOLATE DD2; SOURCE 5 GENE: PFDG_04583; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SUMO, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.S.SINGH,V.K.SHUKLA,M.GUJRATI,R.K.MISHRA,A.KUMAR REVDAT 2 14-JUN-23 5GJL 1 REMARK REVDAT 1 02-AUG-17 5GJL 0 JRNL AUTH J.S.SINGH,V.K.SHUKLA,M.GUJRATI,R.K.MISHRA,A.KUMAR JRNL TITL STRUCTURE, DYNAMICS AND INTERACTION STUDY OF SUMO FROM JRNL TITL 2 PLASMODIUM FALCIPARUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1329 NOE AND 136 DIHEDRAL ANGLE REMARK 4 REMARK 4 5GJL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1300000902. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 20 MM TRIS, 50 MM SODIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O; 20 MM REMARK 210 TRIS, 50 MM SODIUM CHLORIDE, 90% REMARK 210 H2O/10% D2O; 20 MM TRIS, 50 MM REMARK 210 SODIUM CHLORIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HNCO; 3D HCCH- REMARK 210 TOCSY; 3D HCCCONH; 3D CCCONH; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : ASCEND; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, CARA, CCPNMR REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB ILE A 23 HB ILE A 39 1.18 REMARK 500 HH11 ARG A 28 OD1 ASP A 90 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 9 -163.65 64.61 REMARK 500 1 PRO A 15 46.27 -72.98 REMARK 500 1 ASN A 17 138.38 -172.39 REMARK 500 1 PRO A 30 38.49 -71.43 REMARK 500 1 LYS A 40 -65.03 -109.00 REMARK 500 1 LYS A 44 -179.83 -58.99 REMARK 500 1 ILE A 72 -173.43 -170.81 REMARK 500 1 THR A 77 159.15 66.28 REMARK 500 1 GLU A 84 -153.32 -148.39 REMARK 500 1 ASP A 85 113.36 -20.94 REMARK 500 1 GLN A 94 173.73 64.52 REMARK 500 2 VAL A 16 74.93 57.87 REMARK 500 2 PRO A 30 36.20 -64.80 REMARK 500 2 LYS A 42 99.52 -60.57 REMARK 500 2 LYS A 44 153.75 -49.27 REMARK 500 2 ILE A 72 -167.50 -125.68 REMARK 500 2 THR A 77 153.74 61.16 REMARK 500 2 GLU A 84 -152.22 -141.09 REMARK 500 2 GLN A 94 -177.53 61.97 REMARK 500 2 THR A 96 78.00 63.34 REMARK 500 3 ASP A 3 -159.33 -160.80 REMARK 500 3 ASN A 11 77.51 -157.19 REMARK 500 3 SER A 13 25.93 -155.63 REMARK 500 3 SER A 14 102.59 71.94 REMARK 500 3 ASN A 18 75.97 -117.23 REMARK 500 3 PRO A 30 33.48 -68.23 REMARK 500 3 LYS A 40 -81.91 -89.92 REMARK 500 3 LYS A 42 102.01 -53.09 REMARK 500 3 LYS A 44 175.06 -51.60 REMARK 500 3 THR A 77 136.58 68.55 REMARK 500 3 VAL A 93 97.10 -53.39 REMARK 500 3 GLN A 94 57.58 26.99 REMARK 500 4 ALA A 7 65.67 -103.92 REMARK 500 4 VAL A 8 89.28 -69.21 REMARK 500 4 ASN A 10 74.88 -164.85 REMARK 500 4 ASN A 18 -67.34 68.62 REMARK 500 4 PRO A 30 30.63 -67.69 REMARK 500 4 ILE A 72 -171.87 -173.03 REMARK 500 4 THR A 77 162.54 61.96 REMARK 500 4 GLU A 84 -151.52 -131.37 REMARK 500 4 GLN A 94 -84.66 56.72 REMARK 500 4 GLN A 95 36.47 -173.24 REMARK 500 4 THR A 96 -45.17 75.98 REMARK 500 5 ASN A 17 -71.51 -59.97 REMARK 500 5 PRO A 30 31.28 -65.20 REMARK 500 5 LYS A 40 -81.68 -94.15 REMARK 500 5 LYS A 42 101.20 -53.76 REMARK 500 5 LYS A 44 152.58 -39.24 REMARK 500 5 THR A 77 163.83 59.89 REMARK 500 5 GLU A 84 -152.35 -151.23 REMARK 500 REMARK 500 THIS ENTRY HAS 106 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26775 RELATED DB: BMRB REMARK 900 RELATED ID: 36011 RELATED DB: BMRB REMARK 900 AUTHOR STATES THAT FOR THE PDB ENTRY 5GJL AUTHOR SUBMITTED NMR DATA REMARK 900 UNDER ACCESSION NUMBER 26775. IN THAT CASE, BMRB ID 36011 IS REMARK 900 REDUNDANT. DBREF1 5GJL A 1 98 UNP A0A0L7M5F7_PLAF4 DBREF2 5GJL A A0A0L7M5F7 1 98 SEQRES 1 A 98 MET GLY ASP ASP ASP SER ALA VAL ASN ASN ASN GLY SER SEQRES 2 A 98 SER PRO VAL ASN ASN GLN GLY GLU HIS ILE GLN VAL LYS SEQRES 3 A 98 VAL ARG SER PRO ASP GLY ALA GLU VAL PHE PHE LYS ILE SEQRES 4 A 98 LYS ARG LYS THR LYS LEU GLU LYS LEU MET GLU VAL TYR SEQRES 5 A 98 CYS ASN ARG LEU GLY GLN SER MET GLU ALA VAL ARG PHE SEQRES 6 A 98 LEU TYR ASP GLY ASP ARG ILE HIS GLY ASP ASN THR PRO SEQRES 7 A 98 GLU GLN LEU GLY ILE GLU ASP GLY ASP VAL ILE ASP ALA SEQRES 8 A 98 MET VAL GLN GLN THR GLY GLY HELIX 1 AA1 ASP A 4 VAL A 8 5 5 HELIX 2 AA2 ASN A 18 HIS A 22 5 5 HELIX 3 AA3 LYS A 44 GLY A 57 1 14 HELIX 4 AA4 HIS A 73 THR A 77 5 5 SHEET 1 AA1 5 VAL A 35 ILE A 39 0 SHEET 2 AA1 5 ILE A 23 ARG A 28 -1 N ILE A 23 O ILE A 39 SHEET 3 AA1 5 ASP A 87 VAL A 93 1 O ILE A 89 N LYS A 26 SHEET 4 AA1 5 VAL A 63 TYR A 67 -1 N LEU A 66 O ASP A 90 SHEET 5 AA1 5 ASP A 70 ARG A 71 -1 O ASP A 70 N TYR A 67 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1