HEADER LYASE 03-JUL-16 5GK7 TITLE STRUCTURE OF E.COLI FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE BOUND TO TRIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSE-BISPHOSPHATE ALDOLASE CLASS 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FBPA,FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE,FRUCTOSE- COMPND 5 BISPHOSPHATE ALDOLASE CLASS II; COMPND 6 EC: 4.1.2.13; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: FBAA, FBA, FDA, B2925, JW2892; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS FBA TRIS BOUND, LYASE ALDOLASE EC 4.1.2.13 FRUCTOSE 1, 6-BISPHOSPHATE KEYWDS 2 GLYCOLYSIS ANABOLIC PATHWAYS CATABOLIC PATHWAYS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR T.H.TRAN,K.H.HUYNH,T.H.HO,L.W.KANG REVDAT 2 08-NOV-23 5GK7 1 REMARK LINK REVDAT 1 05-JUL-17 5GK7 0 JRNL AUTH T.H.TRAN,K.H.HUYNH,T.H.HO,L.W.KANG JRNL TITL STRUCTURE OF E.COLI FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE, TRIS JRNL TITL 2 BOUND FORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 63833 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3408 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4501 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 247 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5124 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 293 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.114 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5272 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4996 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7129 ; 2.030 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11517 ; 1.169 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 658 ; 6.102 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 230 ;34.816 ;25.478 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 881 ;14.084 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;12.630 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 794 ; 0.149 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5964 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1160 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2652 ; 2.494 ; 1.957 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2650 ; 2.487 ; 1.956 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3302 ; 3.571 ; 2.912 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3303 ; 3.572 ; 2.912 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2620 ; 3.551 ; 2.340 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2621 ; 3.551 ; 2.340 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3828 ; 5.265 ; 3.335 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6190 ; 7.270 ;16.470 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6153 ; 7.267 ;16.431 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5GK7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1300000929. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DCM SI (111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67264 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.48800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1DOS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 5MM FRUCTOSE REMARK 280 1,6-BISPHOSPHATASE, 0.1 M TRIS/HCL PH 7.0, AND 15% PEG 4000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.33550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 179 REMARK 465 GLY A 180 REMARK 465 GLU A 181 REMARK 465 GLU A 182 REMARK 465 ASP A 183 REMARK 465 GLY A 184 REMARK 465 VAL A 185 REMARK 465 ASP A 186 REMARK 465 ASN A 187 REMARK 465 SER A 188 REMARK 465 HIS A 189 REMARK 465 MET A 190 REMARK 465 ASP A 191 REMARK 465 ALA A 192 REMARK 465 SER A 193 REMARK 465 ALA A 194 REMARK 465 VAL A 225 REMARK 465 HIS A 226 REMARK 465 GLY A 227 REMARK 465 VAL A 228 REMARK 465 TYR A 229 REMARK 465 LYS A 230 REMARK 465 PRO A 231 REMARK 465 GLY A 232 REMARK 465 ASN A 233 REMARK 465 MET B 0 REMARK 465 THR B 178 REMARK 465 GLY B 179 REMARK 465 GLY B 180 REMARK 465 GLU B 181 REMARK 465 GLU B 182 REMARK 465 ASP B 183 REMARK 465 GLY B 184 REMARK 465 VAL B 185 REMARK 465 ASP B 186 REMARK 465 ASN B 187 REMARK 465 SER B 188 REMARK 465 HIS B 189 REMARK 465 MET B 190 REMARK 465 ASP B 191 REMARK 465 ALA B 192 REMARK 465 SER B 193 REMARK 465 ALA B 194 REMARK 465 VAL B 225 REMARK 465 HIS B 226 REMARK 465 GLY B 227 REMARK 465 VAL B 228 REMARK 465 TYR B 229 REMARK 465 LYS B 230 REMARK 465 PRO B 231 REMARK 465 GLY B 232 REMARK 465 ASN B 233 REMARK 465 VAL B 234 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 178 CB OG1 CG2 REMARK 470 LEU A 195 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C1 TRS A 402 O HOH A 502 1.92 REMARK 500 OE1 GLU B 174 O HOH B 501 1.98 REMARK 500 O HOH B 502 O HOH B 547 2.06 REMARK 500 O HOH B 501 O HOH B 536 2.09 REMARK 500 OE1 GLU A 174 O HOH A 501 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 66 CB SER B 66 OG -0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 15 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 344 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 LEU B 241 CB - CG - CD1 ANGL. DEV. = 13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 53 69.86 69.14 REMARK 500 HIS A 110 112.02 -19.79 REMARK 500 TYR A 196 -178.59 -55.10 REMARK 500 ASP A 288 -64.10 -147.62 REMARK 500 ASN A 306 26.80 -141.75 REMARK 500 LYS B 53 69.29 66.21 REMARK 500 HIS B 110 115.28 -21.02 REMARK 500 ASP B 288 -67.69 -150.21 REMARK 500 ALA B 354 64.35 -103.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 110 NE2 REMARK 620 2 HIS A 264 ND1 89.1 REMARK 620 3 TRS A 402 N 96.5 172.2 REMARK 620 4 TRS A 402 O1 170.0 96.4 78.9 REMARK 620 5 TRS A 402 O3 94.7 100.0 74.2 92.5 REMARK 620 6 HOH A 508 O 95.0 96.4 88.6 76.1 161.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 110 NE2 REMARK 620 2 HIS B 264 ND1 91.5 REMARK 620 3 TRS B 401 N 93.6 174.9 REMARK 620 4 TRS B 401 O1 94.7 101.7 78.7 REMARK 620 5 TRS B 401 O2 171.4 96.9 78.0 85.7 REMARK 620 6 HOH B 529 O 96.4 95.2 83.5 159.5 80.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GK6 RELATED DB: PDB REMARK 900 RELATED ID: 5GK8 RELATED DB: PDB REMARK 900 RELATED ID: 5GK5 RELATED DB: PDB REMARK 900 RELATED ID: 5GK4 RELATED DB: PDB REMARK 900 RELATED ID: 5GK3 RELATED DB: PDB DBREF 5GK7 A 0 358 UNP P0AB71 ALF_ECOLI 1 359 DBREF 5GK7 B 0 358 UNP P0AB71 ALF_ECOLI 1 359 SEQRES 1 A 359 MET SER LYS ILE PHE ASP PHE VAL LYS PRO GLY VAL ILE SEQRES 2 A 359 THR GLY ASP ASP VAL GLN LYS VAL PHE GLN VAL ALA LYS SEQRES 3 A 359 GLU ASN ASN PHE ALA LEU PRO ALA VAL ASN CYS VAL GLY SEQRES 4 A 359 THR ASP SER ILE ASN ALA VAL LEU GLU THR ALA ALA LYS SEQRES 5 A 359 VAL LYS ALA PRO VAL ILE VAL GLN PHE SER ASN GLY GLY SEQRES 6 A 359 ALA SER PHE ILE ALA GLY LYS GLY VAL LYS SER ASP VAL SEQRES 7 A 359 PRO GLN GLY ALA ALA ILE LEU GLY ALA ILE SER GLY ALA SEQRES 8 A 359 HIS HIS VAL HIS GLN MET ALA GLU HIS TYR GLY VAL PRO SEQRES 9 A 359 VAL ILE LEU HIS THR ASP HIS CYS ALA LYS LYS LEU LEU SEQRES 10 A 359 PRO TRP ILE ASP GLY LEU LEU ASP ALA GLY GLU LYS HIS SEQRES 11 A 359 PHE ALA ALA THR GLY LYS PRO LEU PHE SER SER HIS MET SEQRES 12 A 359 ILE ASP LEU SER GLU GLU SER LEU GLN GLU ASN ILE GLU SEQRES 13 A 359 ILE CYS SER LYS TYR LEU GLU ARG MET SER LYS ILE GLY SEQRES 14 A 359 MET THR LEU GLU ILE GLU LEU GLY CYS THR GLY GLY GLU SEQRES 15 A 359 GLU ASP GLY VAL ASP ASN SER HIS MET ASP ALA SER ALA SEQRES 16 A 359 LEU TYR THR GLN PRO GLU ASP VAL ASP TYR ALA TYR THR SEQRES 17 A 359 GLU LEU SER LYS ILE SER PRO ARG PHE THR ILE ALA ALA SEQRES 18 A 359 SER PHE GLY ASN VAL HIS GLY VAL TYR LYS PRO GLY ASN SEQRES 19 A 359 VAL VAL LEU THR PRO THR ILE LEU ARG ASP SER GLN GLU SEQRES 20 A 359 TYR VAL SER LYS LYS HIS ASN LEU PRO HIS ASN SER LEU SEQRES 21 A 359 ASN PHE VAL PHE HIS GLY GLY SER GLY SER THR ALA GLN SEQRES 22 A 359 GLU ILE LYS ASP SER VAL SER TYR GLY VAL VAL LYS MET SEQRES 23 A 359 ASN ILE ASP THR ASP THR GLN TRP ALA THR TRP GLU GLY SEQRES 24 A 359 VAL LEU ASN TYR TYR LYS ALA ASN GLU ALA TYR LEU GLN SEQRES 25 A 359 GLY GLN LEU GLY ASN PRO LYS GLY GLU ASP GLN PRO ASN SEQRES 26 A 359 LYS LYS TYR TYR ASP PRO ARG VAL TRP LEU ARG ALA GLY SEQRES 27 A 359 GLN THR SER MET ILE ALA ARG LEU GLU LYS ALA PHE GLN SEQRES 28 A 359 GLU LEU ASN ALA ILE ASP VAL LEU SEQRES 1 B 359 MET SER LYS ILE PHE ASP PHE VAL LYS PRO GLY VAL ILE SEQRES 2 B 359 THR GLY ASP ASP VAL GLN LYS VAL PHE GLN VAL ALA LYS SEQRES 3 B 359 GLU ASN ASN PHE ALA LEU PRO ALA VAL ASN CYS VAL GLY SEQRES 4 B 359 THR ASP SER ILE ASN ALA VAL LEU GLU THR ALA ALA LYS SEQRES 5 B 359 VAL LYS ALA PRO VAL ILE VAL GLN PHE SER ASN GLY GLY SEQRES 6 B 359 ALA SER PHE ILE ALA GLY LYS GLY VAL LYS SER ASP VAL SEQRES 7 B 359 PRO GLN GLY ALA ALA ILE LEU GLY ALA ILE SER GLY ALA SEQRES 8 B 359 HIS HIS VAL HIS GLN MET ALA GLU HIS TYR GLY VAL PRO SEQRES 9 B 359 VAL ILE LEU HIS THR ASP HIS CYS ALA LYS LYS LEU LEU SEQRES 10 B 359 PRO TRP ILE ASP GLY LEU LEU ASP ALA GLY GLU LYS HIS SEQRES 11 B 359 PHE ALA ALA THR GLY LYS PRO LEU PHE SER SER HIS MET SEQRES 12 B 359 ILE ASP LEU SER GLU GLU SER LEU GLN GLU ASN ILE GLU SEQRES 13 B 359 ILE CYS SER LYS TYR LEU GLU ARG MET SER LYS ILE GLY SEQRES 14 B 359 MET THR LEU GLU ILE GLU LEU GLY CYS THR GLY GLY GLU SEQRES 15 B 359 GLU ASP GLY VAL ASP ASN SER HIS MET ASP ALA SER ALA SEQRES 16 B 359 LEU TYR THR GLN PRO GLU ASP VAL ASP TYR ALA TYR THR SEQRES 17 B 359 GLU LEU SER LYS ILE SER PRO ARG PHE THR ILE ALA ALA SEQRES 18 B 359 SER PHE GLY ASN VAL HIS GLY VAL TYR LYS PRO GLY ASN SEQRES 19 B 359 VAL VAL LEU THR PRO THR ILE LEU ARG ASP SER GLN GLU SEQRES 20 B 359 TYR VAL SER LYS LYS HIS ASN LEU PRO HIS ASN SER LEU SEQRES 21 B 359 ASN PHE VAL PHE HIS GLY GLY SER GLY SER THR ALA GLN SEQRES 22 B 359 GLU ILE LYS ASP SER VAL SER TYR GLY VAL VAL LYS MET SEQRES 23 B 359 ASN ILE ASP THR ASP THR GLN TRP ALA THR TRP GLU GLY SEQRES 24 B 359 VAL LEU ASN TYR TYR LYS ALA ASN GLU ALA TYR LEU GLN SEQRES 25 B 359 GLY GLN LEU GLY ASN PRO LYS GLY GLU ASP GLN PRO ASN SEQRES 26 B 359 LYS LYS TYR TYR ASP PRO ARG VAL TRP LEU ARG ALA GLY SEQRES 27 B 359 GLN THR SER MET ILE ALA ARG LEU GLU LYS ALA PHE GLN SEQRES 28 B 359 GLU LEU ASN ALA ILE ASP VAL LEU HET GOL A 401 6 HET TRS A 402 8 HET PEG A 403 7 HET ZN A 404 1 HET TRS B 401 8 HET ZN B 402 1 HETNAM GOL GLYCEROL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM ZN ZINC ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN TRS TRIS BUFFER FORMUL 3 GOL C3 H8 O3 FORMUL 4 TRS 2(C4 H12 N O3 1+) FORMUL 5 PEG C4 H10 O3 FORMUL 6 ZN 2(ZN 2+) FORMUL 9 HOH *293(H2 O) HELIX 1 AA1 LYS A 2 PHE A 6 5 5 HELIX 2 AA2 GLY A 14 ASN A 27 1 14 HELIX 3 AA3 GLY A 38 LYS A 53 1 16 HELIX 4 AA4 SER A 61 GLY A 70 1 10 HELIX 5 AA5 GLN A 79 ALA A 97 1 19 HELIX 6 AA6 GLU A 98 GLY A 101 5 4 HELIX 7 AA7 ALA A 112 LYS A 114 5 3 HELIX 8 AA8 LEU A 115 GLY A 134 1 20 HELIX 9 AA9 SER A 149 LYS A 166 1 18 HELIX 10 AB1 GLN A 198 LYS A 211 1 14 HELIX 11 AB2 PRO A 238 ASN A 253 1 16 HELIX 12 AB3 THR A 270 TYR A 280 1 11 HELIX 13 AB4 ASP A 288 ASN A 306 1 19 HELIX 14 AB5 GLU A 307 LEU A 310 5 4 HELIX 15 AB6 ASN A 324 ASP A 329 1 6 HELIX 16 AB7 ASP A 329 LEU A 352 1 24 HELIX 17 AB8 LYS B 2 PHE B 6 5 5 HELIX 18 AB9 GLY B 14 ASN B 28 1 15 HELIX 19 AC1 GLY B 38 LYS B 53 1 16 HELIX 20 AC2 SER B 61 GLY B 70 1 10 HELIX 21 AC3 GLN B 79 ALA B 97 1 19 HELIX 22 AC4 GLU B 98 GLY B 101 5 4 HELIX 23 AC5 ALA B 112 LYS B 114 5 3 HELIX 24 AC6 LEU B 115 GLY B 134 1 20 HELIX 25 AC7 SER B 149 LYS B 166 1 18 HELIX 26 AC8 GLN B 198 LYS B 211 1 14 HELIX 27 AC9 PRO B 238 ASN B 253 1 16 HELIX 28 AD1 THR B 270 TYR B 280 1 11 HELIX 29 AD2 ASP B 288 GLU B 307 1 20 HELIX 30 AD3 ALA B 308 LEU B 310 5 3 HELIX 31 AD4 ASN B 324 ASP B 329 1 6 HELIX 32 AD5 ASP B 329 LEU B 352 1 24 SHEET 1 AA110 GLY A 10 VAL A 11 0 SHEET 2 AA110 PRO A 103 THR A 108 1 O VAL A 104 N GLY A 10 SHEET 3 AA110 SER A 140 MET A 142 1 N SER A 140 O LEU A 106 SHEET 4 AA110 THR A 170 LEU A 175 1 O GLU A 172 N HIS A 141 SHEET 5 AA110 PHE A 216 ALA A 220 1 O ALA A 219 N ILE A 173 SHEET 6 AA110 PHE A 261 PHE A 263 1 O VAL A 262 N ILE A 218 SHEET 7 AA110 VAL A 282 ILE A 287 1 O LYS A 284 N PHE A 263 SHEET 8 AA110 LEU A 31 ASN A 35 1 N ALA A 33 O ILE A 287 SHEET 9 AA110 VAL A 56 PHE A 60 1 O ILE A 57 N VAL A 34 SHEET 10 AA110 PRO A 103 THR A 108 1 O HIS A 107 N VAL A 58 SHEET 1 AA2 2 LEU A 314 ASN A 316 0 SHEET 2 AA2 2 GLY A 319 PRO A 323 -1 O GLN A 322 N GLY A 315 SHEET 1 AA310 GLY B 10 VAL B 11 0 SHEET 2 AA310 PRO B 103 THR B 108 1 O VAL B 104 N GLY B 10 SHEET 3 AA310 SER B 140 ILE B 143 1 N SER B 140 O LEU B 106 SHEET 4 AA310 THR B 170 GLU B 174 1 O GLU B 172 N ILE B 143 SHEET 5 AA310 PHE B 216 ALA B 219 1 O ALA B 219 N ILE B 173 SHEET 6 AA310 PHE B 261 PHE B 263 1 O VAL B 262 N ILE B 218 SHEET 7 AA310 VAL B 282 ILE B 287 1 O LYS B 284 N PHE B 263 SHEET 8 AA310 LEU B 31 ASN B 35 1 N ALA B 33 O ILE B 287 SHEET 9 AA310 VAL B 56 PHE B 60 1 O ILE B 57 N VAL B 34 SHEET 10 AA310 PRO B 103 THR B 108 1 O HIS B 107 N VAL B 58 SHEET 1 AA4 2 LEU B 314 ASN B 316 0 SHEET 2 AA4 2 GLY B 319 PRO B 323 -1 O GLY B 319 N ASN B 316 LINK NZ LYS A 325 OE1 GLN B 292 1555 1555 1.40 LINK NE2 HIS A 110 ZN ZN A 404 1555 1555 2.12 LINK ND1 HIS A 264 ZN ZN A 404 1555 1555 2.13 LINK N TRS A 402 ZN ZN A 404 1555 1555 2.05 LINK O1 TRS A 402 ZN ZN A 404 1555 1555 2.07 LINK O3 TRS A 402 ZN ZN A 404 1555 1555 2.17 LINK ZN ZN A 404 O HOH A 508 1555 1555 2.08 LINK NE2 HIS B 110 ZN ZN B 402 1555 1555 2.02 LINK ND1 HIS B 264 ZN ZN B 402 1555 1555 2.13 LINK N TRS B 401 ZN ZN B 402 1555 1555 2.15 LINK O1 TRS B 401 ZN ZN B 402 1555 1555 2.09 LINK O2 TRS B 401 ZN ZN B 402 1555 1555 2.01 LINK ZN ZN B 402 O HOH B 529 1555 1555 2.08 SITE 1 AC1 7 GLN A 18 PRO A 214 SER A 258 LEU A 259 SITE 2 AC1 7 HOH A 518 HOH A 528 HOH A 543 SITE 1 AC2 9 HIS A 110 HIS A 264 GLY A 265 ZN A 404 SITE 2 AC2 9 HOH A 501 HOH A 502 HOH A 504 HOH A 508 SITE 3 AC2 9 HOH A 509 SITE 1 AC3 8 SER A 88 HIS A 91 HIS A 92 GLN A 95 SITE 2 AC3 8 SER B 88 HIS B 91 HIS B 92 GLN B 95 SITE 1 AC4 4 HIS A 110 HIS A 264 TRS A 402 HOH A 508 SITE 1 AC5 7 HIS B 110 HIS B 264 GLY B 265 ZN B 402 SITE 2 AC5 7 HOH B 503 HOH B 529 HOH B 536 SITE 1 AC6 4 HIS B 110 HIS B 264 TRS B 401 HOH B 529 CRYST1 72.422 72.671 73.052 90.00 103.16 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013808 0.000000 0.003228 0.00000 SCALE2 0.000000 0.013761 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014058 0.00000