HEADER HYDROLASE/TRANSPORT PROTEIN 11-JUL-16 5GLF TITLE STRUCTURAL INSIGHTS INTO THE INTERACTION OF P97 N-TERMINAL DOMAIN AND TITLE 2 SHP MOTIF IN DERLIN-1 RHOMBOID PSEUDOPROTEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE; COMPND 3 CHAIN: A, C, E, G; COMPND 4 FRAGMENT: P97 N-TERMINAL DOMAIN (UNP RESIDUES 21-199); COMPND 5 SYNONYM: TER ATPASE,15S MG(2+)-ATPASE P97 SUBUNIT,VALOSIN-CONTAINING COMPND 6 PROTEIN,VCP; COMPND 7 EC: 3.6.4.6; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DERLIN-1; COMPND 11 CHAIN: B, D, F, H; COMPND 12 FRAGMENT: SHP BOX (UNP RESIDUES 239-250); COMPND 13 SYNONYM: DEGRADATION IN ENDOPLASMIC RETICULUM PROTEIN 1,DERTRIN-1, COMPND 14 DER1-LIKE PROTEIN 1; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VCP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS BETA-BARREL, ATPASE, DERLIN1 SHP BOX UBIQUITIN, PHOSPHORYLATION, KEYWDS 2 HYDROLASE-TRANSPORT PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.J.LIM,Y.LEE,S.Y.YOON,T.T.LY,J.Y.KANG,H.-S.YOUN,J.Y.AN,J.-G.LEE, AUTHOR 2 K.R.PARK,T.G.KIM,J.K.YANG,Y.JUN,S.H.EOM REVDAT 3 08-NOV-23 5GLF 1 REMARK REVDAT 2 06-DEC-17 5GLF 1 JRNL REMARK REVDAT 1 09-NOV-16 5GLF 0 JRNL AUTH J.J.LIM,Y.LEE,S.Y.YOON,T.T.LY,J.Y.KANG,H.S.YOUN,J.Y.AN, JRNL AUTH 2 J.G.LEE,K.R.PARK,T.G.KIM,J.K.YANG,Y.JUN,S.H.EOM JRNL TITL STRUCTURAL INSIGHTS INTO THE INTERACTION OF HUMAN P97 JRNL TITL 2 N-TERMINAL DOMAIN AND SHP MOTIF IN DERLIN-1 RHOMBOID JRNL TITL 3 PSEUDOPROTEASE. JRNL REF FEBS LETT. V. 590 4402 2016 JRNL REFN ISSN 1873-3468 JRNL PMID 27714797 JRNL DOI 10.1002/1873-3468.12447 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 32415 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1716 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2129 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5763 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 408 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.392 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.233 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.167 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.739 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5862 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5800 ; 0.009 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7906 ; 1.741 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13333 ; 1.797 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 713 ; 6.435 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 282 ;36.697 ;23.262 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1075 ;14.357 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 65 ;16.552 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 889 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6489 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1300 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2876 ; 2.925 ; 3.426 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2875 ; 2.924 ; 3.425 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3581 ; 4.443 ; 5.117 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3582 ; 4.444 ; 5.118 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2986 ; 3.860 ; 3.951 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2987 ; 3.859 ; 3.952 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4326 ; 6.032 ; 5.724 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6578 ; 8.523 ;27.687 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6487 ; 8.462 ;27.552 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 23 191 C 23 191 20780 0.13 0.05 REMARK 3 2 A 24 191 E 24 191 20930 0.12 0.05 REMARK 3 3 A 23 189 G 23 189 20632 0.12 0.05 REMARK 3 4 C 24 191 E 24 191 20606 0.13 0.05 REMARK 3 5 C 23 189 G 23 189 20376 0.14 0.05 REMARK 3 6 E 24 189 G 24 189 20636 0.12 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5GLF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1300000665. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : MOLREP REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34582 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3QQ7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, BIS-TRIS PH 6.5, 0.2M REMARK 280 MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.90100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 111.05700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.20100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 111.05700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.90100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.20100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 16 REMARK 465 ALA A 17 REMARK 465 MET A 18 REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 465 ASN A 21 REMARK 465 ARG A 22 REMARK 465 ASP A 193 REMARK 465 GLU A 194 REMARK 465 GLU A 195 REMARK 465 GLU A 196 REMARK 465 SER A 197 REMARK 465 LEU A 198 REMARK 465 ASN A 199 REMARK 465 GLY C 16 REMARK 465 ALA C 17 REMARK 465 MET C 18 REMARK 465 GLY C 19 REMARK 465 SER C 20 REMARK 465 ASN C 21 REMARK 465 ASP C 193 REMARK 465 GLU C 194 REMARK 465 GLU C 195 REMARK 465 GLU C 196 REMARK 465 SER C 197 REMARK 465 LEU C 198 REMARK 465 ASN C 199 REMARK 465 ARG D 239 REMARK 465 GLY E 16 REMARK 465 ALA E 17 REMARK 465 MET E 18 REMARK 465 GLY E 19 REMARK 465 SER E 20 REMARK 465 ASN E 21 REMARK 465 ARG E 22 REMARK 465 PRO E 23 REMARK 465 ASP E 193 REMARK 465 GLU E 194 REMARK 465 GLU E 195 REMARK 465 GLU E 196 REMARK 465 SER E 197 REMARK 465 LEU E 198 REMARK 465 ASN E 199 REMARK 465 ARG F 239 REMARK 465 ASP F 250 REMARK 465 GLY G 16 REMARK 465 ALA G 17 REMARK 465 MET G 18 REMARK 465 GLY G 19 REMARK 465 SER G 20 REMARK 465 ASN G 21 REMARK 465 ARG G 22 REMARK 465 ARG G 191 REMARK 465 GLU G 192 REMARK 465 ASP G 193 REMARK 465 GLU G 194 REMARK 465 GLU G 195 REMARK 465 GLU G 196 REMARK 465 SER G 197 REMARK 465 LEU G 198 REMARK 465 ASN G 199 REMARK 465 ARG H 239 REMARK 465 ASP H 250 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 157 N - CA - C ANGL. DEV. = 17.7 DEGREES REMARK 500 ARG C 89 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 GLY E 157 N - CA - C ANGL. DEV. = -17.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 141 16.44 59.56 REMARK 500 GLU C 141 16.47 58.29 REMARK 500 ARG E 64 18.20 59.95 REMARK 500 GLU E 141 15.03 59.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 157 MET A 158 43.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH F 306 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH G 275 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH G 276 DISTANCE = 6.63 ANGSTROMS DBREF 5GLF A 21 199 UNP P55072 TERA_HUMAN 21 199 DBREF 5GLF B 239 250 UNP Q9BUN8 DERL1_HUMAN 239 250 DBREF 5GLF C 21 199 UNP P55072 TERA_HUMAN 21 199 DBREF 5GLF D 239 250 UNP Q9BUN8 DERL1_HUMAN 239 250 DBREF 5GLF E 21 199 UNP P55072 TERA_HUMAN 21 199 DBREF 5GLF F 239 250 UNP Q9BUN8 DERL1_HUMAN 239 250 DBREF 5GLF G 21 199 UNP P55072 TERA_HUMAN 21 199 DBREF 5GLF H 239 250 UNP Q9BUN8 DERL1_HUMAN 239 250 SEQADV 5GLF GLY A 16 UNP P55072 EXPRESSION TAG SEQADV 5GLF ALA A 17 UNP P55072 EXPRESSION TAG SEQADV 5GLF MET A 18 UNP P55072 EXPRESSION TAG SEQADV 5GLF GLY A 19 UNP P55072 EXPRESSION TAG SEQADV 5GLF SER A 20 UNP P55072 EXPRESSION TAG SEQADV 5GLF GLY C 16 UNP P55072 EXPRESSION TAG SEQADV 5GLF ALA C 17 UNP P55072 EXPRESSION TAG SEQADV 5GLF MET C 18 UNP P55072 EXPRESSION TAG SEQADV 5GLF GLY C 19 UNP P55072 EXPRESSION TAG SEQADV 5GLF SER C 20 UNP P55072 EXPRESSION TAG SEQADV 5GLF GLY E 16 UNP P55072 EXPRESSION TAG SEQADV 5GLF ALA E 17 UNP P55072 EXPRESSION TAG SEQADV 5GLF MET E 18 UNP P55072 EXPRESSION TAG SEQADV 5GLF GLY E 19 UNP P55072 EXPRESSION TAG SEQADV 5GLF SER E 20 UNP P55072 EXPRESSION TAG SEQADV 5GLF GLY G 16 UNP P55072 EXPRESSION TAG SEQADV 5GLF ALA G 17 UNP P55072 EXPRESSION TAG SEQADV 5GLF MET G 18 UNP P55072 EXPRESSION TAG SEQADV 5GLF GLY G 19 UNP P55072 EXPRESSION TAG SEQADV 5GLF SER G 20 UNP P55072 EXPRESSION TAG SEQRES 1 A 184 GLY ALA MET GLY SER ASN ARG PRO ASN ARG LEU ILE VAL SEQRES 2 A 184 ASP GLU ALA ILE ASN GLU ASP ASN SER VAL VAL SER LEU SEQRES 3 A 184 SER GLN PRO LYS MET ASP GLU LEU GLN LEU PHE ARG GLY SEQRES 4 A 184 ASP THR VAL LEU LEU LYS GLY LYS LYS ARG ARG GLU ALA SEQRES 5 A 184 VAL CYS ILE VAL LEU SER ASP ASP THR CYS SER ASP GLU SEQRES 6 A 184 LYS ILE ARG MET ASN ARG VAL VAL ARG ASN ASN LEU ARG SEQRES 7 A 184 VAL ARG LEU GLY ASP VAL ILE SER ILE GLN PRO CYS PRO SEQRES 8 A 184 ASP VAL LYS TYR GLY LYS ARG ILE HIS VAL LEU PRO ILE SEQRES 9 A 184 ASP ASP THR VAL GLU GLY ILE THR GLY ASN LEU PHE GLU SEQRES 10 A 184 VAL TYR LEU LYS PRO TYR PHE LEU GLU ALA TYR ARG PRO SEQRES 11 A 184 ILE ARG LYS GLY ASP ILE PHE LEU VAL ARG GLY GLY MET SEQRES 12 A 184 ARG ALA VAL GLU PHE LYS VAL VAL GLU THR ASP PRO SER SEQRES 13 A 184 PRO TYR CYS ILE VAL ALA PRO ASP THR VAL ILE HIS CYS SEQRES 14 A 184 GLU GLY GLU PRO ILE LYS ARG GLU ASP GLU GLU GLU SER SEQRES 15 A 184 LEU ASN SEQRES 1 B 12 ARG HIS ASN TRP GLY GLN GLY PHE ARG LEU GLY ASP SEQRES 1 C 184 GLY ALA MET GLY SER ASN ARG PRO ASN ARG LEU ILE VAL SEQRES 2 C 184 ASP GLU ALA ILE ASN GLU ASP ASN SER VAL VAL SER LEU SEQRES 3 C 184 SER GLN PRO LYS MET ASP GLU LEU GLN LEU PHE ARG GLY SEQRES 4 C 184 ASP THR VAL LEU LEU LYS GLY LYS LYS ARG ARG GLU ALA SEQRES 5 C 184 VAL CYS ILE VAL LEU SER ASP ASP THR CYS SER ASP GLU SEQRES 6 C 184 LYS ILE ARG MET ASN ARG VAL VAL ARG ASN ASN LEU ARG SEQRES 7 C 184 VAL ARG LEU GLY ASP VAL ILE SER ILE GLN PRO CYS PRO SEQRES 8 C 184 ASP VAL LYS TYR GLY LYS ARG ILE HIS VAL LEU PRO ILE SEQRES 9 C 184 ASP ASP THR VAL GLU GLY ILE THR GLY ASN LEU PHE GLU SEQRES 10 C 184 VAL TYR LEU LYS PRO TYR PHE LEU GLU ALA TYR ARG PRO SEQRES 11 C 184 ILE ARG LYS GLY ASP ILE PHE LEU VAL ARG GLY GLY MET SEQRES 12 C 184 ARG ALA VAL GLU PHE LYS VAL VAL GLU THR ASP PRO SER SEQRES 13 C 184 PRO TYR CYS ILE VAL ALA PRO ASP THR VAL ILE HIS CYS SEQRES 14 C 184 GLU GLY GLU PRO ILE LYS ARG GLU ASP GLU GLU GLU SER SEQRES 15 C 184 LEU ASN SEQRES 1 D 12 ARG HIS ASN TRP GLY GLN GLY PHE ARG LEU GLY ASP SEQRES 1 E 184 GLY ALA MET GLY SER ASN ARG PRO ASN ARG LEU ILE VAL SEQRES 2 E 184 ASP GLU ALA ILE ASN GLU ASP ASN SER VAL VAL SER LEU SEQRES 3 E 184 SER GLN PRO LYS MET ASP GLU LEU GLN LEU PHE ARG GLY SEQRES 4 E 184 ASP THR VAL LEU LEU LYS GLY LYS LYS ARG ARG GLU ALA SEQRES 5 E 184 VAL CYS ILE VAL LEU SER ASP ASP THR CYS SER ASP GLU SEQRES 6 E 184 LYS ILE ARG MET ASN ARG VAL VAL ARG ASN ASN LEU ARG SEQRES 7 E 184 VAL ARG LEU GLY ASP VAL ILE SER ILE GLN PRO CYS PRO SEQRES 8 E 184 ASP VAL LYS TYR GLY LYS ARG ILE HIS VAL LEU PRO ILE SEQRES 9 E 184 ASP ASP THR VAL GLU GLY ILE THR GLY ASN LEU PHE GLU SEQRES 10 E 184 VAL TYR LEU LYS PRO TYR PHE LEU GLU ALA TYR ARG PRO SEQRES 11 E 184 ILE ARG LYS GLY ASP ILE PHE LEU VAL ARG GLY GLY MET SEQRES 12 E 184 ARG ALA VAL GLU PHE LYS VAL VAL GLU THR ASP PRO SER SEQRES 13 E 184 PRO TYR CYS ILE VAL ALA PRO ASP THR VAL ILE HIS CYS SEQRES 14 E 184 GLU GLY GLU PRO ILE LYS ARG GLU ASP GLU GLU GLU SER SEQRES 15 E 184 LEU ASN SEQRES 1 F 12 ARG HIS ASN TRP GLY GLN GLY PHE ARG LEU GLY ASP SEQRES 1 G 184 GLY ALA MET GLY SER ASN ARG PRO ASN ARG LEU ILE VAL SEQRES 2 G 184 ASP GLU ALA ILE ASN GLU ASP ASN SER VAL VAL SER LEU SEQRES 3 G 184 SER GLN PRO LYS MET ASP GLU LEU GLN LEU PHE ARG GLY SEQRES 4 G 184 ASP THR VAL LEU LEU LYS GLY LYS LYS ARG ARG GLU ALA SEQRES 5 G 184 VAL CYS ILE VAL LEU SER ASP ASP THR CYS SER ASP GLU SEQRES 6 G 184 LYS ILE ARG MET ASN ARG VAL VAL ARG ASN ASN LEU ARG SEQRES 7 G 184 VAL ARG LEU GLY ASP VAL ILE SER ILE GLN PRO CYS PRO SEQRES 8 G 184 ASP VAL LYS TYR GLY LYS ARG ILE HIS VAL LEU PRO ILE SEQRES 9 G 184 ASP ASP THR VAL GLU GLY ILE THR GLY ASN LEU PHE GLU SEQRES 10 G 184 VAL TYR LEU LYS PRO TYR PHE LEU GLU ALA TYR ARG PRO SEQRES 11 G 184 ILE ARG LYS GLY ASP ILE PHE LEU VAL ARG GLY GLY MET SEQRES 12 G 184 ARG ALA VAL GLU PHE LYS VAL VAL GLU THR ASP PRO SER SEQRES 13 G 184 PRO TYR CYS ILE VAL ALA PRO ASP THR VAL ILE HIS CYS SEQRES 14 G 184 GLU GLY GLU PRO ILE LYS ARG GLU ASP GLU GLU GLU SER SEQRES 15 G 184 LEU ASN SEQRES 1 H 12 ARG HIS ASN TRP GLY GLN GLY PHE ARG LEU GLY ASP FORMUL 9 HOH *408(H2 O) HELIX 1 AA1 SER A 42 GLN A 50 1 9 HELIX 2 AA2 ASN A 85 ARG A 93 1 9 HELIX 3 AA3 ASP A 120 VAL A 123 5 4 HELIX 4 AA4 ASN A 129 TYR A 134 1 6 HELIX 5 AA5 TYR A 134 LEU A 140 1 7 HELIX 6 AA6 SER C 42 GLN C 50 1 9 HELIX 7 AA7 ASN C 85 LEU C 92 1 8 HELIX 8 AA8 THR C 122 ILE C 126 5 5 HELIX 9 AA9 ASN C 129 TYR C 134 1 6 HELIX 10 AB1 TYR C 134 LEU C 140 1 7 HELIX 11 AB2 SER E 42 GLN E 50 1 9 HELIX 12 AB3 ASN E 85 ARG E 93 1 9 HELIX 13 AB4 ASP E 120 VAL E 123 5 4 HELIX 14 AB5 ASN E 129 TYR E 134 1 6 HELIX 15 AB6 TYR E 134 LEU E 140 1 7 HELIX 16 AB7 SER G 42 GLN G 50 1 9 HELIX 17 AB8 ASN G 85 LEU G 92 1 8 HELIX 18 AB9 ASP G 120 VAL G 123 5 4 HELIX 19 AC1 ASN G 129 TYR G 134 1 6 HELIX 20 AC2 TYR G 134 LEU G 140 1 7 SHEET 1 AA1 7 ASN A 24 ASP A 29 0 SHEET 2 AA1 7 LYS A 81 ARG A 83 1 O ILE A 82 N ASP A 29 SHEET 3 AA1 7 VAL A 38 LEU A 41 -1 N SER A 40 O ARG A 83 SHEET 4 AA1 7 GLU A 66 SER A 73 1 O ILE A 70 N VAL A 39 SHEET 5 AA1 7 THR A 56 LYS A 60 -1 N LEU A 59 O ALA A 67 SHEET 6 AA1 7 VAL A 99 PRO A 104 -1 O GLN A 103 N LEU A 58 SHEET 7 AA1 7 ASN A 24 ASP A 29 -1 N LEU A 26 O ILE A 100 SHEET 1 AA2 5 ILE A 151 GLY A 156 0 SHEET 2 AA2 5 ARG A 159 ASP A 169 -1 O ARG A 159 N GLY A 156 SHEET 3 AA2 5 ARG A 113 PRO A 118 -1 N HIS A 115 O GLU A 167 SHEET 4 AA2 5 VAL A 181 HIS A 183 1 O HIS A 183 N ILE A 114 SHEET 5 AA2 5 GLY B 245 ARG B 247 -1 O PHE B 246 N ILE A 182 SHEET 1 AA3 2 ARG A 144 ARG A 147 0 SHEET 2 AA3 2 TYR A 173 VAL A 176 -1 O VAL A 176 N ARG A 144 SHEET 1 AA4 7 ASN C 24 ASP C 29 0 SHEET 2 AA4 7 LYS C 81 ARG C 83 1 O ILE C 82 N ASP C 29 SHEET 3 AA4 7 VAL C 38 LEU C 41 -1 N SER C 40 O ARG C 83 SHEET 4 AA4 7 GLU C 66 SER C 73 1 O ILE C 70 N VAL C 39 SHEET 5 AA4 7 THR C 56 LYS C 60 -1 N LEU C 59 O ALA C 67 SHEET 6 AA4 7 VAL C 99 PRO C 104 -1 O GLN C 103 N LEU C 58 SHEET 7 AA4 7 ASN C 24 ASP C 29 -1 N LEU C 26 O ILE C 100 SHEET 1 AA5 5 ILE C 151 VAL C 154 0 SHEET 2 AA5 5 VAL C 161 ASP C 169 -1 O VAL C 161 N VAL C 154 SHEET 3 AA5 5 ARG C 113 PRO C 118 -1 N LEU C 117 O LYS C 164 SHEET 4 AA5 5 VAL C 181 HIS C 183 1 O HIS C 183 N ILE C 114 SHEET 5 AA5 5 GLY D 245 ARG D 247 -1 O PHE D 246 N ILE C 182 SHEET 1 AA6 2 ARG C 144 ARG C 147 0 SHEET 2 AA6 2 TYR C 173 VAL C 176 -1 O VAL C 176 N ARG C 144 SHEET 1 AA7 7 ARG E 25 ASP E 29 0 SHEET 2 AA7 7 LYS E 81 ARG E 83 1 O ILE E 82 N ASP E 29 SHEET 3 AA7 7 VAL E 38 LEU E 41 -1 N SER E 40 O ARG E 83 SHEET 4 AA7 7 GLU E 66 SER E 73 1 O ILE E 70 N VAL E 39 SHEET 5 AA7 7 THR E 56 LYS E 60 -1 N LEU E 59 O ALA E 67 SHEET 6 AA7 7 VAL E 99 PRO E 104 -1 O GLN E 103 N LEU E 58 SHEET 7 AA7 7 ARG E 25 ASP E 29 -1 N LEU E 26 O ILE E 100 SHEET 1 AA8 5 ILE E 151 ARG E 155 0 SHEET 2 AA8 5 ALA E 160 ASP E 169 -1 O VAL E 161 N VAL E 154 SHEET 3 AA8 5 ARG E 113 PRO E 118 -1 N LEU E 117 O LYS E 164 SHEET 4 AA8 5 VAL E 181 HIS E 183 1 O HIS E 183 N ILE E 114 SHEET 5 AA8 5 GLY F 245 ARG F 247 -1 O PHE F 246 N ILE E 182 SHEET 1 AA9 2 ARG E 144 ARG E 147 0 SHEET 2 AA9 2 TYR E 173 VAL E 176 -1 O CYS E 174 N ILE E 146 SHEET 1 AB1 7 ARG G 25 ASP G 29 0 SHEET 2 AB1 7 LYS G 81 ARG G 83 1 O ILE G 82 N ASP G 29 SHEET 3 AB1 7 VAL G 38 LEU G 41 -1 N SER G 40 O ARG G 83 SHEET 4 AB1 7 GLU G 66 SER G 73 1 O ILE G 70 N VAL G 39 SHEET 5 AB1 7 THR G 56 LYS G 60 -1 N LEU G 59 O ALA G 67 SHEET 6 AB1 7 VAL G 99 PRO G 104 -1 O GLN G 103 N LEU G 58 SHEET 7 AB1 7 ARG G 25 ASP G 29 -1 N LEU G 26 O ILE G 100 SHEET 1 AB2 5 ILE G 151 GLY G 156 0 SHEET 2 AB2 5 ARG G 159 ASP G 169 -1 O VAL G 161 N VAL G 154 SHEET 3 AB2 5 ARG G 113 PRO G 118 -1 N HIS G 115 O GLU G 167 SHEET 4 AB2 5 VAL G 181 HIS G 183 1 O HIS G 183 N ILE G 114 SHEET 5 AB2 5 GLY H 245 ARG H 247 -1 O PHE H 246 N ILE G 182 SHEET 1 AB3 2 ARG G 144 ARG G 147 0 SHEET 2 AB3 2 TYR G 173 VAL G 176 -1 O CYS G 174 N ILE G 146 CISPEP 1 ASP A 169 PRO A 170 0 -3.31 CISPEP 2 SER A 171 PRO A 172 0 4.89 CISPEP 3 THR C 127 GLY C 128 0 -1.94 CISPEP 4 ASP C 169 PRO C 170 0 5.27 CISPEP 5 SER C 171 PRO C 172 0 5.61 CISPEP 6 GLU E 124 GLY E 125 0 -9.61 CISPEP 7 ASP E 169 PRO E 170 0 -2.91 CISPEP 8 SER E 171 PRO E 172 0 8.85 CISPEP 9 ASP G 169 PRO G 170 0 2.84 CISPEP 10 SER G 171 PRO G 172 0 11.63 CRYST1 43.802 74.402 222.114 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022830 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013440 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004502 0.00000