HEADER TRANSFERASE 13-JUL-16 5GMB TITLE METHYLATION AT POSITION 32 OF TRNA CATALYZED BY TRMJ ALTERS OXIDATIVE TITLE 2 STRESS RESPONSE IN PSEUDOMONAS AERUIGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (CYTIDINE/URIDINE-2'-O-)-METHYLTRANSFERASE TRMJ; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-167; COMPND 5 SYNONYM: TRNA (CYTIDINE(32)/URIDINE(32)-2'-O)-METHYLTRANSFERASE,TRNA COMPND 6 CM32/UM32 METHYLTRANSFERASE; COMPND 7 EC: 2.1.1.200; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 STRAIN: B136-33; SOURCE 5 GENE: TRMJ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS PSEUDOMONAS AERUGINOSA, TRNA METHYLTRANSFERASE, TRMJ, OXIDATIVE KEYWDS 2 STRESS, TRNA MODIFICATION, WOBBLE BASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.JAROENSUK,S.ATICHARTPONGKUL,Y.H.CHIONH,Y.H.WONG,C.W.LIEW,M.E.MCBEE, AUTHOR 2 N.THONGDEE,E.G.PRESTWICH,M.S.DEMOTT,S.MONGKOLSUK,P.C.DEDON,J.LESCAR, AUTHOR 3 M.FUANGTHONG REVDAT 3 08-NOV-23 5GMB 1 REMARK REVDAT 2 13-DEC-17 5GMB 1 JRNL REMARK REVDAT 1 26-OCT-16 5GMB 0 JRNL AUTH J.JAROENSUK,S.ATICHARTPONGKUL,Y.H.CHIONH,Y.H.WONG,C.W.LIEW, JRNL AUTH 2 M.E.MCBEE,N.THONGDEE,E.G.PRESTWICH,M.S.DEMOTT,S.MONGKOLSUK, JRNL AUTH 3 P.C.DEDON,J.LESCAR,M.FUANGTHONG JRNL TITL METHYLATION AT POSITION 32 OF TRNA CATALYZED BY TRMJ ALTERS JRNL TITL 2 OXIDATIVE STRESS RESPONSE IN PSEUDOMONAS AERUGINOSA. JRNL REF NUCLEIC ACIDS RES. V. 44 10834 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 27683218 JRNL DOI 10.1093/NAR/GKW870 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 27532 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1403 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.68 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 46.74 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1409 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2430 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1332 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.46 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1295 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06100 REMARK 3 B22 (A**2) : -0.06100 REMARK 3 B33 (A**2) : 0.12200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.210 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.084 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.083 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.077 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.078 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1350 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1838 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 469 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 34 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 203 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1350 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 175 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1744 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.02 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.37 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.47 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5GMB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1300001056. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : TOROIDAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29132 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 30.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.73000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4CND REMARK 200 REMARK 200 REMARK: SOLID CUBIC CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MGCL2, CACL2, PEG MME 550, PEG 20000, REMARK 280 MOPS/NA-HEPES PH7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.09000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.89800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.89800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.13500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.89800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.89800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.04500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.89800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.89800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 93.13500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.89800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.89800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.04500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.09000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 342 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 3 O HOH A 201 1.28 REMARK 500 OD1 ASP A 55 O HOH A 202 1.71 REMARK 500 O HOH A 303 O HOH A 335 2.03 REMARK 500 O HOH A 244 O HOH A 337 2.06 REMARK 500 CG ASP A 55 O HOH A 202 2.09 REMARK 500 NZ LYS A 26 O HOH A 202 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 343 O HOH A 345 4555 1.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 13 CB SER A 13 OG -0.096 REMARK 500 LYS A 26 N LYS A 26 CA 0.120 REMARK 500 ASN A 27 N ASN A 27 CA 0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 27 C - N - CA ANGL. DEV. = -19.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 31 -11.24 -147.96 REMARK 500 ALA A 53 39.37 -90.84 REMARK 500 TYR A 118 -51.22 70.03 REMARK 500 PHE A 141 72.79 -151.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GM8 RELATED DB: PDB REMARK 900 RELATED ID: 5GMC RELATED DB: PDB DBREF1 5GMB A 1 167 UNP A0A072ZPM2_PSEAI DBREF2 5GMB A A0A072ZPM2 1 167 SEQADV 5GMB PHE A -3 UNP A0A072ZPM EXPRESSION TAG SEQADV 5GMB GLN A -2 UNP A0A072ZPM EXPRESSION TAG SEQADV 5GMB SER A -1 UNP A0A072ZPM EXPRESSION TAG SEQADV 5GMB MET A 0 UNP A0A072ZPM EXPRESSION TAG SEQRES 1 A 171 PHE GLN SER MET MET LEU ASP ARG ILE ARG VAL VAL LEU SEQRES 2 A 171 VAL ASN THR SER HIS PRO GLY ASN ILE GLY GLY ALA ALA SEQRES 3 A 171 ARG ALA MET LYS ASN MET GLY LEU SER GLN LEU VAL LEU SEQRES 4 A 171 VAL GLN PRO GLU SER PHE PRO HIS GLY ASP ALA VAL ALA SEQRES 5 A 171 ARG ALA SER GLY ALA THR ASP ILE LEU ASP ALA ALA ARG SEQRES 6 A 171 VAL VAL ASP THR LEU GLU GLU ALA LEU SER GLY CYS SER SEQRES 7 A 171 VAL VAL LEU GLY THR SER ALA ARG ASP ARG ARG ILE PRO SEQRES 8 A 171 TRP PRO LEU LEU ASP PRO ARG GLU CYS ALA THR THR CYS SEQRES 9 A 171 LEU GLU HIS LEU GLU ALA ASN GLY GLU VAL ALA LEU VAL SEQRES 10 A 171 PHE GLY ARG GLU TYR ALA GLY LEU THR ASN GLU GLU LEU SEQRES 11 A 171 GLN ARG CYS GLN PHE HIS VAL HIS ILE PRO SER ASP PRO SEQRES 12 A 171 GLU PHE GLY SER LEU ASN LEU ALA ALA ALA VAL GLN VAL SEQRES 13 A 171 LEU THR TYR GLU VAL ARG MET ALA TRP LEU ALA ALA GLN SEQRES 14 A 171 GLY LYS FORMUL 2 HOH *173(H2 O) HELIX 1 AA1 GLN A -2 ASP A 3 5 6 HELIX 2 AA2 HIS A 14 ASN A 27 1 14 HELIX 3 AA3 HIS A 43 SER A 51 1 9 HELIX 4 AA4 ALA A 53 ALA A 60 1 8 HELIX 5 AA5 THR A 65 LEU A 70 1 6 HELIX 6 AA6 ASP A 92 ALA A 106 1 15 HELIX 7 AA7 THR A 122 ARG A 128 1 7 HELIX 8 AA8 ASP A 138 GLY A 142 5 5 HELIX 9 AA9 ASN A 145 ALA A 164 1 20 SHEET 1 AA1 7 ARG A 61 VAL A 63 0 SHEET 2 AA1 7 GLN A 32 VAL A 36 1 N LEU A 35 O ARG A 61 SHEET 3 AA1 7 ILE A 5 VAL A 10 1 N VAL A 7 O VAL A 34 SHEET 4 AA1 7 VAL A 110 PHE A 114 1 O VAL A 110 N ARG A 6 SHEET 5 AA1 7 VAL A 75 THR A 79 1 N LEU A 77 O VAL A 113 SHEET 6 AA1 7 PHE A 131 VAL A 133 1 O VAL A 133 N GLY A 78 SHEET 7 AA1 7 LEU A 90 LEU A 91 1 N LEU A 91 O HIS A 132 CISPEP 1 PHE A 41 PRO A 42 0 -6.50 CRYST1 59.796 59.796 124.180 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016724 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016724 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008053 0.00000