HEADER HYDROLASE 19-JUL-16 5GN3 TITLE STRUCTURE OF SELENOMETHIONINE-LABELLED URACIL DNA GLYCOSYLASE (BDIUNG) TITLE 2 FROM BRADYRHIZOBIUM DIAZOEFFICIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLR0248 PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: URACIL DNA GLYCOSYLASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRADYRHIZOBIUM DIAZOEFFICIENS USDA 110; SOURCE 3 ORGANISM_TAXID: 224911; SOURCE 4 STRAIN: USDA 110; SOURCE 5 GENE: BLR0248; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834 KEYWDS URACIL DNA GLYCOSYLASE (UDG), BRADYRHIZOBIUM DIAZOEFFICIENS, NITROGEN KEYWDS 2 FIXING SYMBIONT, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.V.PATIL,U.V.CHEMBAZHI,U.VARSHNEY,E.WOO REVDAT 2 14-JUN-17 5GN3 1 JRNL REVDAT 1 03-MAY-17 5GN3 0 JRNL AUTH U.V.CHEMBAZHI,V.V.PATIL,S.SAH,W.REEVE,R.P.TIWARI,E.WOO, JRNL AUTH 2 U.VARSHNEY JRNL TITL URACIL DNA GLYCOSYLASE (UDG) ACTIVITIES IN BRADYRHIZOBIUM JRNL TITL 2 DIAZOEFFICIENS: CHARACTERIZATION OF A NEW CLASS OF UDG WITH JRNL TITL 3 BROAD SUBSTRATE SPECIFICITY JRNL REF NUCLEIC ACIDS RES. V. 45 5863 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 28369586 JRNL DOI 10.1093/NAR/GKX209 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.B.SANG,T.SRINATH,A.G.PATIL,E.WOO,U.VARSHNEY REMARK 1 TITL A UNIQUE URACIL-DNA BINDING PROTEIN OF THE URACIL DNA REMARK 1 TITL 2 GLYCOSYLASE SUPERFAMILY REMARK 1 REF NUCLEIC ACIDS RES. V. 43 8452 2015 REMARK 1 REFN ISSN 0305-1048 REMARK 1 PMID 26304551 REMARK 1 DOI 10.1093/NAR/GKV854 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 132492 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.840 REMARK 3 FREE R VALUE TEST SET COUNT : 3764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.9930 - 6.8199 0.97 5056 150 0.1479 0.1501 REMARK 3 2 6.8199 - 5.4226 1.00 5191 146 0.1579 0.1924 REMARK 3 3 5.4226 - 4.7399 1.00 5161 151 0.1414 0.1757 REMARK 3 4 4.7399 - 4.3078 1.00 5206 152 0.1373 0.1932 REMARK 3 5 4.3078 - 3.9997 0.99 5189 146 0.1424 0.1667 REMARK 3 6 3.9997 - 3.7643 0.99 5162 151 0.1586 0.1751 REMARK 3 7 3.7643 - 3.5761 0.99 5078 153 0.1646 0.1903 REMARK 3 8 3.5761 - 3.4206 0.98 5202 149 0.1721 0.2013 REMARK 3 9 3.4206 - 3.2891 0.98 5047 152 0.1881 0.2023 REMARK 3 10 3.2891 - 3.1757 0.97 5037 149 0.1982 0.2158 REMARK 3 11 3.1757 - 3.0765 0.96 4990 147 0.1940 0.2172 REMARK 3 12 3.0765 - 2.9886 0.95 4970 148 0.2005 0.2430 REMARK 3 13 2.9886 - 2.9100 0.94 4905 146 0.2093 0.2464 REMARK 3 14 2.9100 - 2.8391 0.93 4795 146 0.2082 0.2277 REMARK 3 15 2.8391 - 2.7746 0.90 4737 141 0.2112 0.2565 REMARK 3 16 2.7746 - 2.7156 0.90 4614 134 0.2024 0.2963 REMARK 3 17 2.7156 - 2.6613 0.88 4580 131 0.2102 0.2354 REMARK 3 18 2.6613 - 2.6111 0.88 4595 130 0.2227 0.2492 REMARK 3 19 2.6111 - 2.5645 0.88 4578 134 0.2227 0.2383 REMARK 3 20 2.5645 - 2.5210 0.87 4522 129 0.2216 0.2733 REMARK 3 21 2.5210 - 2.4804 0.86 4457 127 0.2270 0.3408 REMARK 3 22 2.4804 - 2.4422 0.87 4464 133 0.2122 0.2632 REMARK 3 23 2.4422 - 2.4063 0.84 4452 132 0.2223 0.2061 REMARK 3 24 2.4063 - 2.3724 0.87 4473 129 0.2168 0.2903 REMARK 3 25 2.3724 - 2.3404 0.84 4341 126 0.2218 0.2995 REMARK 3 26 2.3404 - 2.3100 0.85 4418 128 0.2325 0.2431 REMARK 3 27 2.3100 - 2.2811 0.67 3508 104 0.2306 0.2516 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 8635 REMARK 3 ANGLE : 1.193 11773 REMARK 3 CHIRALITY : 0.050 1268 REMARK 3 PLANARITY : 0.007 1527 REMARK 3 DIHEDRAL : 12.192 3095 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ENTRY CONTAINS FRIEDEL PAIRS IN REMARK 3 F_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 5GN3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1300001013. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 132492 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.281 REMARK 200 RESOLUTION RANGE LOW (A) : 30.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 200 MM SODIUM CITRATE, REMARK 280 100 MM SODIUM CITRATE/CITRIC ACID, PH 4.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.47800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 128.13450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.03400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 128.13450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.47800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.03400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 352 O HOH D 411 1.94 REMARK 500 O HOH B 406 O HOH B 464 1.95 REMARK 500 O HOH D 352 O HOH D 423 1.96 REMARK 500 O HOH A 433 O HOH A 455 1.96 REMARK 500 O HOH B 375 O HOH B 467 1.97 REMARK 500 OE1 GLN B 164 O HOH B 301 1.98 REMARK 500 O HOH A 499 O HOH B 484 1.98 REMARK 500 NH1 ARG A 242 O HOH A 301 2.00 REMARK 500 O HOH A 494 O HOH B 440 2.00 REMARK 500 O HOH A 369 O HOH B 371 2.01 REMARK 500 NE2 GLN A 78 O HOH A 302 2.02 REMARK 500 O HOH D 388 O HOH D 442 2.03 REMARK 500 O HOH C 355 O HOH D 306 2.05 REMARK 500 OE1 GLU D 112 O HOH D 301 2.05 REMARK 500 O HOH A 495 O HOH A 500 2.06 REMARK 500 O HOH C 360 O HOH C 363 2.07 REMARK 500 O HOH D 338 O HOH D 436 2.07 REMARK 500 O HOH C 355 O HOH D 431 2.07 REMARK 500 O ALA A 183 O HOH A 303 2.07 REMARK 500 NH1 ARG C 242 O HOH C 301 2.10 REMARK 500 O HOH B 441 O HOH D 437 2.12 REMARK 500 O HOH D 347 O HOH D 369 2.12 REMARK 500 O HOH B 439 O HOH B 468 2.12 REMARK 500 O HOH B 338 O HOH B 464 2.13 REMARK 500 NH2 ARG D 15 O HOH D 302 2.13 REMARK 500 O HOH D 378 O HOH D 406 2.14 REMARK 500 O HOH C 333 O HOH D 427 2.14 REMARK 500 O ALA C 148 O HOH C 302 2.16 REMARK 500 O HOH A 340 O HOH A 459 2.17 REMARK 500 O HOH A 476 O HOH A 488 2.17 REMARK 500 NE ARG B 242 O HOH B 302 2.18 REMARK 500 OH TYR C 21 O HOH C 303 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 44 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 242 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 242 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 SER D 104 N - CA - C ANGL. DEV. = 19.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 56 -68.24 -97.99 REMARK 500 ALA A 59 -154.55 -126.16 REMARK 500 SER A 104 46.85 -150.85 REMARK 500 SER A 107 -3.84 84.04 REMARK 500 GLN B 56 -71.71 -99.00 REMARK 500 ALA B 59 -154.07 -127.83 REMARK 500 LEU B 69 75.86 45.08 REMARK 500 GLN C 56 -68.07 -99.75 REMARK 500 ALA C 59 -153.35 -125.55 REMARK 500 GLN C 103 91.39 -68.70 REMARK 500 LEU C 138 -61.81 -101.52 REMARK 500 GLN D 56 -71.42 -97.45 REMARK 500 ALA D 59 -154.48 -127.70 REMARK 500 GLN D 103 74.51 -68.72 REMARK 500 SER D 107 9.46 -63.40 REMARK 500 PRO D 234 154.98 -49.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 503 DISTANCE = 6.44 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GN2 RELATED DB: PDB REMARK 900 RELATED ID: 5GNW RELATED DB: PDB REMARK 900 RELATED ID: 5GRK RELATED DB: PDB DBREF 5GN3 A 1 272 UNP Q89XR0 Q89XR0_BRADU 1 272 DBREF 5GN3 B 1 272 UNP Q89XR0 Q89XR0_BRADU 1 272 DBREF 5GN3 C 1 272 UNP Q89XR0 Q89XR0_BRADU 1 272 DBREF 5GN3 D 1 272 UNP Q89XR0 Q89XR0_BRADU 1 272 SEQRES 1 A 272 MSE LEU THR GLU PHE ASP ALA GLY TYR GLY GLU GLN PRO SEQRES 2 A 272 PHE ARG ASP LEU CYS ALA ASN TYR PRO GLY ALA GLU ALA SEQRES 3 A 272 TYR ASP PRO HIS ASP PHE ARG ILE GLU TRP GLY PRO ILE SEQRES 4 A 272 PHE HIS ARG GLY ARG LEU ASP GLY SER ALA ARG VAL LEU SEQRES 5 A 272 ILE VAL GLY GLN ASP PRO ALA GLN HIS GLU THR ILE VAL SEQRES 6 A 272 ARG ARG ILE LEU VAL GLY THR ALA GLY ARG ARG THR GLN SEQRES 7 A 272 GLY PHE LEU ALA LYS LEU GLY ILE VAL GLN SER TYR VAL SEQRES 8 A 272 MSE VAL ASN THR PHE LEU TYR SER VAL TYR GLY GLN SER SEQRES 9 A 272 GLY GLY SER LYS HIS LYS ASN GLU PRO GLY ILE VAL ASP SEQRES 10 A 272 TYR ARG ASN LYS TRP PHE LYS ALA VAL LEU GLY PRO GLY SEQRES 11 A 272 ASN ILE GLU ALA VAL VAL SER LEU GLY GLY LEU ALA ASP SEQRES 12 A 272 GLU ALA TRP LYS ALA TRP LEU LYS SER SER ASP GLY ALA SEQRES 13 A 272 ALA TYR LYS THR LEU ALA TYR GLN HIS ILE THR HIS PRO SEQRES 14 A 272 THR TRP PRO GLU SER SER ALA HIS ASP SER ALA THR GLN SEQRES 15 A 272 ALA ALA ASN THR LYS ILE MSE LEU ALA LYS TRP ASN ALA SEQRES 16 A 272 ALA LEU ALA ALA LEU ALA PRO GLU VAL LYS HIS PRO ASP SEQRES 17 A 272 VAL PRO THR THR LEU VAL PRO TYR GLY ASP ALA PHE LYS SEQRES 18 A 272 PRO SER GLU LEU VAL ASP ILE ILE ALA LYS ASP LEU PRO SEQRES 19 A 272 ALA GLY LEU PRO ALA TRP MSE ARG GLY ASP THR PRO TRP SEQRES 20 A 272 ALA VAL ARG GLN GLY VAL ASP ALA ALA ALA LYS ARG ARG SEQRES 21 A 272 THR ILE MSE ILE THR ILE PRO ASP GLY VAL ILE PRO SEQRES 1 B 272 MSE LEU THR GLU PHE ASP ALA GLY TYR GLY GLU GLN PRO SEQRES 2 B 272 PHE ARG ASP LEU CYS ALA ASN TYR PRO GLY ALA GLU ALA SEQRES 3 B 272 TYR ASP PRO HIS ASP PHE ARG ILE GLU TRP GLY PRO ILE SEQRES 4 B 272 PHE HIS ARG GLY ARG LEU ASP GLY SER ALA ARG VAL LEU SEQRES 5 B 272 ILE VAL GLY GLN ASP PRO ALA GLN HIS GLU THR ILE VAL SEQRES 6 B 272 ARG ARG ILE LEU VAL GLY THR ALA GLY ARG ARG THR GLN SEQRES 7 B 272 GLY PHE LEU ALA LYS LEU GLY ILE VAL GLN SER TYR VAL SEQRES 8 B 272 MSE VAL ASN THR PHE LEU TYR SER VAL TYR GLY GLN SER SEQRES 9 B 272 GLY GLY SER LYS HIS LYS ASN GLU PRO GLY ILE VAL ASP SEQRES 10 B 272 TYR ARG ASN LYS TRP PHE LYS ALA VAL LEU GLY PRO GLY SEQRES 11 B 272 ASN ILE GLU ALA VAL VAL SER LEU GLY GLY LEU ALA ASP SEQRES 12 B 272 GLU ALA TRP LYS ALA TRP LEU LYS SER SER ASP GLY ALA SEQRES 13 B 272 ALA TYR LYS THR LEU ALA TYR GLN HIS ILE THR HIS PRO SEQRES 14 B 272 THR TRP PRO GLU SER SER ALA HIS ASP SER ALA THR GLN SEQRES 15 B 272 ALA ALA ASN THR LYS ILE MSE LEU ALA LYS TRP ASN ALA SEQRES 16 B 272 ALA LEU ALA ALA LEU ALA PRO GLU VAL LYS HIS PRO ASP SEQRES 17 B 272 VAL PRO THR THR LEU VAL PRO TYR GLY ASP ALA PHE LYS SEQRES 18 B 272 PRO SER GLU LEU VAL ASP ILE ILE ALA LYS ASP LEU PRO SEQRES 19 B 272 ALA GLY LEU PRO ALA TRP MSE ARG GLY ASP THR PRO TRP SEQRES 20 B 272 ALA VAL ARG GLN GLY VAL ASP ALA ALA ALA LYS ARG ARG SEQRES 21 B 272 THR ILE MSE ILE THR ILE PRO ASP GLY VAL ILE PRO SEQRES 1 C 272 MSE LEU THR GLU PHE ASP ALA GLY TYR GLY GLU GLN PRO SEQRES 2 C 272 PHE ARG ASP LEU CYS ALA ASN TYR PRO GLY ALA GLU ALA SEQRES 3 C 272 TYR ASP PRO HIS ASP PHE ARG ILE GLU TRP GLY PRO ILE SEQRES 4 C 272 PHE HIS ARG GLY ARG LEU ASP GLY SER ALA ARG VAL LEU SEQRES 5 C 272 ILE VAL GLY GLN ASP PRO ALA GLN HIS GLU THR ILE VAL SEQRES 6 C 272 ARG ARG ILE LEU VAL GLY THR ALA GLY ARG ARG THR GLN SEQRES 7 C 272 GLY PHE LEU ALA LYS LEU GLY ILE VAL GLN SER TYR VAL SEQRES 8 C 272 MSE VAL ASN THR PHE LEU TYR SER VAL TYR GLY GLN SER SEQRES 9 C 272 GLY GLY SER LYS HIS LYS ASN GLU PRO GLY ILE VAL ASP SEQRES 10 C 272 TYR ARG ASN LYS TRP PHE LYS ALA VAL LEU GLY PRO GLY SEQRES 11 C 272 ASN ILE GLU ALA VAL VAL SER LEU GLY GLY LEU ALA ASP SEQRES 12 C 272 GLU ALA TRP LYS ALA TRP LEU LYS SER SER ASP GLY ALA SEQRES 13 C 272 ALA TYR LYS THR LEU ALA TYR GLN HIS ILE THR HIS PRO SEQRES 14 C 272 THR TRP PRO GLU SER SER ALA HIS ASP SER ALA THR GLN SEQRES 15 C 272 ALA ALA ASN THR LYS ILE MSE LEU ALA LYS TRP ASN ALA SEQRES 16 C 272 ALA LEU ALA ALA LEU ALA PRO GLU VAL LYS HIS PRO ASP SEQRES 17 C 272 VAL PRO THR THR LEU VAL PRO TYR GLY ASP ALA PHE LYS SEQRES 18 C 272 PRO SER GLU LEU VAL ASP ILE ILE ALA LYS ASP LEU PRO SEQRES 19 C 272 ALA GLY LEU PRO ALA TRP MSE ARG GLY ASP THR PRO TRP SEQRES 20 C 272 ALA VAL ARG GLN GLY VAL ASP ALA ALA ALA LYS ARG ARG SEQRES 21 C 272 THR ILE MSE ILE THR ILE PRO ASP GLY VAL ILE PRO SEQRES 1 D 272 MSE LEU THR GLU PHE ASP ALA GLY TYR GLY GLU GLN PRO SEQRES 2 D 272 PHE ARG ASP LEU CYS ALA ASN TYR PRO GLY ALA GLU ALA SEQRES 3 D 272 TYR ASP PRO HIS ASP PHE ARG ILE GLU TRP GLY PRO ILE SEQRES 4 D 272 PHE HIS ARG GLY ARG LEU ASP GLY SER ALA ARG VAL LEU SEQRES 5 D 272 ILE VAL GLY GLN ASP PRO ALA GLN HIS GLU THR ILE VAL SEQRES 6 D 272 ARG ARG ILE LEU VAL GLY THR ALA GLY ARG ARG THR GLN SEQRES 7 D 272 GLY PHE LEU ALA LYS LEU GLY ILE VAL GLN SER TYR VAL SEQRES 8 D 272 MSE VAL ASN THR PHE LEU TYR SER VAL TYR GLY GLN SER SEQRES 9 D 272 GLY GLY SER LYS HIS LYS ASN GLU PRO GLY ILE VAL ASP SEQRES 10 D 272 TYR ARG ASN LYS TRP PHE LYS ALA VAL LEU GLY PRO GLY SEQRES 11 D 272 ASN ILE GLU ALA VAL VAL SER LEU GLY GLY LEU ALA ASP SEQRES 12 D 272 GLU ALA TRP LYS ALA TRP LEU LYS SER SER ASP GLY ALA SEQRES 13 D 272 ALA TYR LYS THR LEU ALA TYR GLN HIS ILE THR HIS PRO SEQRES 14 D 272 THR TRP PRO GLU SER SER ALA HIS ASP SER ALA THR GLN SEQRES 15 D 272 ALA ALA ASN THR LYS ILE MSE LEU ALA LYS TRP ASN ALA SEQRES 16 D 272 ALA LEU ALA ALA LEU ALA PRO GLU VAL LYS HIS PRO ASP SEQRES 17 D 272 VAL PRO THR THR LEU VAL PRO TYR GLY ASP ALA PHE LYS SEQRES 18 D 272 PRO SER GLU LEU VAL ASP ILE ILE ALA LYS ASP LEU PRO SEQRES 19 D 272 ALA GLY LEU PRO ALA TRP MSE ARG GLY ASP THR PRO TRP SEQRES 20 D 272 ALA VAL ARG GLN GLY VAL ASP ALA ALA ALA LYS ARG ARG SEQRES 21 D 272 THR ILE MSE ILE THR ILE PRO ASP GLY VAL ILE PRO MODRES 5GN3 MSE A 1 MET MODIFIED RESIDUE MODRES 5GN3 MSE A 92 MET MODIFIED RESIDUE MODRES 5GN3 MSE A 189 MET MODIFIED RESIDUE MODRES 5GN3 MSE A 241 MET MODIFIED RESIDUE MODRES 5GN3 MSE A 263 MET MODIFIED RESIDUE MODRES 5GN3 MSE B 1 MET MODIFIED RESIDUE MODRES 5GN3 MSE B 92 MET MODIFIED RESIDUE MODRES 5GN3 MSE B 189 MET MODIFIED RESIDUE MODRES 5GN3 MSE B 241 MET MODIFIED RESIDUE MODRES 5GN3 MSE B 263 MET MODIFIED RESIDUE MODRES 5GN3 MSE C 1 MET MODIFIED RESIDUE MODRES 5GN3 MSE C 92 MET MODIFIED RESIDUE MODRES 5GN3 MSE C 189 MET MODIFIED RESIDUE MODRES 5GN3 MSE C 241 MET MODIFIED RESIDUE MODRES 5GN3 MSE C 263 MET MODIFIED RESIDUE MODRES 5GN3 MSE D 1 MET MODIFIED RESIDUE MODRES 5GN3 MSE D 92 MET MODIFIED RESIDUE MODRES 5GN3 MSE D 189 MET MODIFIED RESIDUE MODRES 5GN3 MSE D 241 MET MODIFIED RESIDUE MODRES 5GN3 MSE D 263 MET MODIFIED RESIDUE HET MSE A 1 8 HET MSE A 92 8 HET MSE A 189 8 HET MSE A 241 8 HET MSE A 263 8 HET MSE B 1 8 HET MSE B 92 8 HET MSE B 189 8 HET MSE B 241 8 HET MSE B 263 8 HET MSE C 1 8 HET MSE C 92 8 HET MSE C 189 8 HET MSE C 241 8 HET MSE C 263 8 HET MSE D 1 8 HET MSE D 92 8 HET MSE D 189 8 HET MSE D 241 8 HET MSE D 263 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 20(C5 H11 N O2 SE) FORMUL 5 HOH *621(H2 O) HELIX 1 AA1 PRO A 13 ASN A 20 1 8 HELIX 2 AA2 ARG A 33 GLY A 37 5 5 HELIX 3 AA3 ALA A 59 ARG A 66 1 8 HELIX 4 AA4 GLY A 71 LEU A 84 1 14 HELIX 5 AA5 GLU A 112 GLY A 128 1 17 HELIX 6 AA6 GLY A 139 LYS A 151 1 13 HELIX 7 AA7 GLY A 155 LYS A 159 5 5 HELIX 8 AA8 THR A 170 ALA A 176 1 7 HELIX 9 AA9 ASP A 178 ALA A 201 1 24 HELIX 10 AB1 PRO A 202 VAL A 204 5 3 HELIX 11 AB2 LYS A 221 LEU A 225 5 5 HELIX 12 AB3 ILE A 229 LEU A 233 5 5 HELIX 13 AB4 PRO A 238 GLY A 243 5 6 HELIX 14 AB5 ASP A 254 ARG A 260 1 7 HELIX 15 AB6 PRO B 13 ASN B 20 1 8 HELIX 16 AB7 ARG B 33 GLY B 37 5 5 HELIX 17 AB8 ALA B 59 ARG B 66 1 8 HELIX 18 AB9 GLY B 71 LEU B 84 1 14 HELIX 19 AC1 GLY B 105 LYS B 110 5 6 HELIX 20 AC2 GLU B 112 GLY B 128 1 17 HELIX 21 AC3 GLY B 139 SER B 152 1 14 HELIX 22 AC4 ASP B 154 LYS B 159 5 6 HELIX 23 AC5 THR B 170 ALA B 176 1 7 HELIX 24 AC6 ASP B 178 ALA B 201 1 24 HELIX 25 AC7 PRO B 202 VAL B 204 5 3 HELIX 26 AC8 LYS B 221 LEU B 225 5 5 HELIX 27 AC9 ILE B 229 LEU B 233 5 5 HELIX 28 AD1 PRO B 238 GLY B 243 5 6 HELIX 29 AD2 ASP B 254 ARG B 260 1 7 HELIX 30 AD3 PRO C 13 ASN C 20 1 8 HELIX 31 AD4 ARG C 33 GLY C 37 5 5 HELIX 32 AD5 ALA C 59 ARG C 66 1 8 HELIX 33 AD6 GLY C 71 LEU C 84 1 14 HELIX 34 AD7 GLU C 112 GLY C 128 1 17 HELIX 35 AD8 GLY C 139 LYS C 151 1 13 HELIX 36 AD9 SER C 153 LYS C 159 5 7 HELIX 37 AE1 THR C 170 ALA C 176 1 7 HELIX 38 AE2 ASP C 178 ALA C 201 1 24 HELIX 39 AE3 PRO C 202 VAL C 204 5 3 HELIX 40 AE4 LYS C 221 LEU C 225 5 5 HELIX 41 AE5 ILE C 229 LEU C 233 5 5 HELIX 42 AE6 PRO C 238 GLY C 243 5 6 HELIX 43 AE7 ASP C 254 ARG C 260 1 7 HELIX 44 AE8 PRO D 13 ASN D 20 1 8 HELIX 45 AE9 ARG D 33 GLY D 37 5 5 HELIX 46 AF1 ALA D 59 ARG D 66 1 8 HELIX 47 AF2 GLY D 71 LEU D 84 1 14 HELIX 48 AF3 GLU D 112 GLY D 128 1 17 HELIX 49 AF4 GLY D 139 SER D 152 1 14 HELIX 50 AF5 GLY D 155 LYS D 159 5 5 HELIX 51 AF6 THR D 170 ALA D 176 1 7 HELIX 52 AF7 ASP D 178 ALA D 201 1 24 HELIX 53 AF8 LYS D 221 LEU D 225 5 5 HELIX 54 AF9 ILE D 229 LEU D 233 5 5 HELIX 55 AG1 PRO D 238 GLY D 243 5 6 HELIX 56 AG2 ASP D 254 ARG D 260 1 7 SHEET 1 AA1 5 ARG A 42 GLY A 43 0 SHEET 2 AA1 5 TYR A 90 ASN A 94 -1 O MSE A 92 N ARG A 42 SHEET 3 AA1 5 VAL A 51 GLY A 55 1 N GLY A 55 O VAL A 93 SHEET 4 AA1 5 ALA A 134 LEU A 138 1 O VAL A 136 N VAL A 54 SHEET 5 AA1 5 ALA A 162 ILE A 166 1 O ALA A 162 N VAL A 135 SHEET 1 AA2 4 ALA A 248 ARG A 250 0 SHEET 2 AA2 4 THR A 261 THR A 265 -1 O MSE A 263 N VAL A 249 SHEET 3 AA2 4 THR B 261 THR B 265 -1 O ILE B 264 N ILE A 262 SHEET 4 AA2 4 ALA B 248 ARG B 250 -1 N VAL B 249 O MSE B 263 SHEET 1 AA3 5 ARG B 42 GLY B 43 0 SHEET 2 AA3 5 TYR B 90 ASN B 94 -1 O MSE B 92 N ARG B 42 SHEET 3 AA3 5 VAL B 51 GLY B 55 1 N GLY B 55 O VAL B 93 SHEET 4 AA3 5 ALA B 134 LEU B 138 1 O VAL B 136 N VAL B 54 SHEET 5 AA3 5 TYR B 163 ILE B 166 1 O ILE B 166 N SER B 137 SHEET 1 AA4 5 ARG C 42 GLY C 43 0 SHEET 2 AA4 5 TYR C 90 ASN C 94 -1 O MSE C 92 N ARG C 42 SHEET 3 AA4 5 VAL C 51 GLY C 55 1 N ILE C 53 O VAL C 91 SHEET 4 AA4 5 ALA C 134 SER C 137 1 O VAL C 136 N VAL C 54 SHEET 5 AA4 5 TYR C 163 HIS C 165 1 O GLN C 164 N VAL C 135 SHEET 1 AA5 4 ALA C 248 ARG C 250 0 SHEET 2 AA5 4 THR C 261 THR C 265 -1 O MSE C 263 N VAL C 249 SHEET 3 AA5 4 THR D 261 THR D 265 -1 O ILE D 264 N ILE C 262 SHEET 4 AA5 4 ALA D 248 ARG D 250 -1 N VAL D 249 O MSE D 263 SHEET 1 AA6 5 ARG D 42 GLY D 43 0 SHEET 2 AA6 5 TYR D 90 ASN D 94 -1 O MSE D 92 N ARG D 42 SHEET 3 AA6 5 VAL D 51 GLY D 55 1 N ILE D 53 O VAL D 91 SHEET 4 AA6 5 ALA D 134 LEU D 138 1 O VAL D 136 N VAL D 54 SHEET 5 AA6 5 ALA D 162 ILE D 166 1 O ILE D 166 N SER D 137 LINK C MSE A 1 N LEU A 2 1555 1555 1.33 LINK C VAL A 91 N MSE A 92 1555 1555 1.33 LINK C MSE A 92 N VAL A 93 1555 1555 1.33 LINK C ILE A 188 N MSE A 189 1555 1555 1.34 LINK C MSE A 189 N LEU A 190 1555 1555 1.33 LINK C TRP A 240 N MSE A 241 1555 1555 1.33 LINK C MSE A 241 N ARG A 242 1555 1555 1.32 LINK C ILE A 262 N MSE A 263 1555 1555 1.32 LINK C MSE A 263 N ILE A 264 1555 1555 1.32 LINK C MSE B 1 N LEU B 2 1555 1555 1.31 LINK C VAL B 91 N MSE B 92 1555 1555 1.32 LINK C MSE B 92 N VAL B 93 1555 1555 1.32 LINK C ILE B 188 N MSE B 189 1555 1555 1.33 LINK C MSE B 189 N LEU B 190 1555 1555 1.33 LINK C TRP B 240 N MSE B 241 1555 1555 1.33 LINK C MSE B 241 N ARG B 242 1555 1555 1.33 LINK C ILE B 262 N MSE B 263 1555 1555 1.32 LINK C MSE B 263 N ILE B 264 1555 1555 1.33 LINK C MSE C 1 N LEU C 2 1555 1555 1.32 LINK C VAL C 91 N MSE C 92 1555 1555 1.33 LINK C MSE C 92 N VAL C 93 1555 1555 1.32 LINK C ILE C 188 N MSE C 189 1555 1555 1.33 LINK C MSE C 189 N LEU C 190 1555 1555 1.33 LINK C TRP C 240 N MSE C 241 1555 1555 1.31 LINK C MSE C 241 N ARG C 242 1555 1555 1.31 LINK C ILE C 262 N MSE C 263 1555 1555 1.32 LINK C MSE C 263 N ILE C 264 1555 1555 1.33 LINK C MSE D 1 N LEU D 2 1555 1555 1.30 LINK C VAL D 91 N MSE D 92 1555 1555 1.33 LINK C MSE D 92 N VAL D 93 1555 1555 1.33 LINK C ILE D 188 N MSE D 189 1555 1555 1.33 LINK C MSE D 189 N LEU D 190 1555 1555 1.33 LINK C TRP D 240 N MSE D 241 1555 1555 1.33 LINK C MSE D 241 N ARG D 242 1555 1555 1.33 LINK C ILE D 262 N MSE D 263 1555 1555 1.33 LINK C MSE D 263 N ILE D 264 1555 1555 1.33 CISPEP 1 GLN A 12 PRO A 13 0 -2.12 CISPEP 2 GLY A 106 SER A 107 0 -4.53 CISPEP 3 GLN B 12 PRO B 13 0 -0.36 CISPEP 4 GLN C 12 PRO C 13 0 -1.81 CISPEP 5 GLN D 12 PRO D 13 0 -1.90 CISPEP 6 GLY D 105 GLY D 106 0 -0.01 CRYST1 70.956 90.068 256.269 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014093 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011103 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003902 0.00000 HETATM 1 N MSE A 1 -15.754 21.814 102.450 1.00 67.54 N HETATM 2 CA MSE A 1 -14.802 21.342 101.455 1.00 66.27 C HETATM 3 C MSE A 1 -13.540 22.210 101.420 1.00 61.64 C HETATM 4 O MSE A 1 -12.873 22.294 100.383 1.00 62.85 O HETATM 5 CB MSE A 1 -15.459 21.347 100.075 1.00 20.00 C HETATM 6 CG MSE A 1 -16.599 20.350 99.939 1.00 20.00 C HETATM 7 SE MSE A 1 -16.094 18.522 100.225 1.00 20.00 SE HETATM 8 CE MSE A 1 -14.952 18.301 98.661 1.00 20.00 C