HEADER HYDROLASE 20-JUL-16 5GND TITLE STRUCTURE OF DEG PROTEASE HHOA FROM SYNECHOCYSTIS SP. PCC 6803 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SERINE PROTEASE HHOA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 56-394; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: UNK-UNK-UNK-UNK-TRP; COMPND 8 CHAIN: U; COMPND 9 OTHER_DETAILS: THIS PEPTIDE IS A CO-PURIFIED PEPTIDE PRODUCED BY COMPND 10 ESCHERICHIA COLI BL21(DE3). SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. PCC 6803 SUBSTR. KAZUSA; SOURCE 3 ORGANISM_TAXID: 1111708; SOURCE 4 STRAIN: PCC 6803 / KAZUSA; SOURCE 5 GENE: HHOA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-22B(+); SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI BL21(DE3); SOURCE 13 ORGANISM_TAXID: 469008; SOURCE 14 STRAIN: BL21(DE3) KEYWDS SERINE PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.DONG,J.WANG,L.LIU REVDAT 3 08-NOV-23 5GND 1 JRNL REMARK LINK REVDAT 2 26-OCT-16 5GND 1 JRNL REVDAT 1 21-SEP-16 5GND 0 JRNL AUTH W.DONG,J.WANG,G.NIU,S.ZHAO,L.LIU JRNL TITL CRYSTAL STRUCTURE OF THE ZINC-BOUND HHOA PROTEASE FROM JRNL TITL 2 SYNECHOCYSTIS SP. PCC 6803 JRNL REF FEBS LETT. V. 590 3435 2016 JRNL REFN ISSN 0014-5793 JRNL PMID 27616292 JRNL DOI 10.1002/1873-3468.12416 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 13557 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 675 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.9223 - 4.2732 1.00 2734 140 0.2057 0.2497 REMARK 3 2 4.2732 - 3.3924 1.00 2661 132 0.2295 0.3045 REMARK 3 3 3.3924 - 2.9638 1.00 2659 130 0.2717 0.3338 REMARK 3 4 2.9638 - 2.6929 1.00 2612 144 0.3157 0.3653 REMARK 3 5 2.6929 - 2.4999 0.85 2216 129 0.3121 0.3624 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2104 REMARK 3 ANGLE : 1.128 2869 REMARK 3 CHIRALITY : 0.069 349 REMARK 3 PLANARITY : 0.004 383 REMARK 3 DIHEDRAL : 15.486 759 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -18.9689 14.4422 32.6502 REMARK 3 T TENSOR REMARK 3 T11: 0.0901 T22: -0.7035 REMARK 3 T33: -0.0705 T12: -0.4821 REMARK 3 T13: 0.3513 T23: 0.5252 REMARK 3 L TENSOR REMARK 3 L11: 0.1803 L22: 0.0543 REMARK 3 L33: 0.4555 L12: -0.0145 REMARK 3 L13: -0.2369 L23: -0.1895 REMARK 3 S TENSOR REMARK 3 S11: 0.2350 S12: 0.0913 S13: 0.3615 REMARK 3 S21: 0.0309 S22: -0.3057 S23: 0.3480 REMARK 3 S31: -0.0212 S32: -0.2937 S33: -0.0098 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5GND COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1300001115. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13981 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 59.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5B6L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA ACETATE, 25%(W/V) PEG4000, PH REMARK 280 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 67.60950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.03436 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 37.91800 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 67.60950 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 39.03436 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 37.91800 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 67.60950 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 39.03436 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 37.91800 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 67.60950 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 39.03436 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 37.91800 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 67.60950 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 39.03436 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 37.91800 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 67.60950 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 39.03436 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 37.91800 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 78.06873 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 75.83600 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 78.06873 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 75.83600 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 78.06873 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 75.83600 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 78.06873 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 75.83600 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 78.06873 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 75.83600 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 78.06873 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 75.83600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, U REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, U REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, U REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, U REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 113.75400 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, U REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 113.75400 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, U REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 113.75400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 501 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A 502 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 618 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 628 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 658 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 55 REMARK 465 THR A 74 REMARK 465 GLU A 75 REMARK 465 THR A 76 REMARK 465 VAL A 77 REMARK 465 VAL A 78 REMARK 465 THR A 79 REMARK 465 ARG A 80 REMARK 465 ARG A 81 REMARK 465 THR A 82 REMARK 465 ASP A 83 REMARK 465 PRO A 84 REMARK 465 ILE A 85 REMARK 465 LEU A 86 REMARK 465 ASP A 87 REMARK 465 ASP A 88 REMARK 465 PRO A 89 REMARK 465 PHE A 90 REMARK 465 PHE A 91 REMARK 465 GLN A 92 REMARK 465 GLU A 93 REMARK 465 PHE A 94 REMARK 465 PHE A 95 REMARK 465 GLY A 96 REMARK 465 ARG A 97 REMARK 465 SER A 98 REMARK 465 PHE A 99 REMARK 465 PRO A 100 REMARK 465 VAL A 101 REMARK 465 PRO A 102 REMARK 465 PRO A 103 REMARK 465 ARG A 104 REMARK 465 GLU A 105 REMARK 465 ARG A 106 REMARK 465 ARG A 107 REMARK 465 ILE A 108 REMARK 465 ALA A 109 REMARK 465 GLY A 110 REMARK 465 LYS A 135 REMARK 465 ARG A 211 REMARK 465 SER A 212 REMARK 465 ALA A 213 REMARK 465 ALA A 214 REMARK 465 GLN A 215 REMARK 465 ALA A 216 REMARK 465 GLY A 217 REMARK 465 ILE A 218 REMARK 465 PRO A 219 REMARK 465 ASP A 220 REMARK 465 LYS A 221 REMARK 465 ARG A 222 REMARK 465 ARG A 256 REMARK 465 ALA A 257 REMARK 465 ASP A 258 REMARK 465 ALA A 259 REMARK 465 THR A 260 REMARK 465 ASN A 391 REMARK 465 PRO A 392 REMARK 465 THR A 393 REMARK 465 SER A 394 REMARK 465 LEU A 395 REMARK 465 GLU A 396 REMARK 465 HIS A 397 REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 465 HIS A 401 REMARK 465 HIS A 402 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 372 CG OD1 OD2 REMARK 470 ARG A 390 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 630 O HOH A 654 1.94 REMARK 500 O ILE A 342 O HOH A 601 2.04 REMARK 500 O HOH A 641 O HOH A 644 2.10 REMARK 500 O ILE A 320 O HOH A 602 2.11 REMARK 500 O ILE A 117 O HOH A 603 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 653 O HOH A 653 18445 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 133 N - CA - C ANGL. DEV. = 25.1 DEGREES REMARK 500 SER A 134 N - CA - CB ANGL. DEV. = 18.9 DEGREES REMARK 500 VAL A 136 CA - C - N ANGL. DEV. = -15.9 DEGREES REMARK 500 VAL A 136 O - C - N ANGL. DEV. = 15.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 131 51.54 -57.55 REMARK 500 ALA A 133 -79.20 6.33 REMARK 500 LEU A 197 0.04 -161.97 REMARK 500 ALA A 280 -117.30 -87.43 REMARK 500 PRO A 285 105.71 -56.99 REMARK 500 PRO A 315 47.41 -66.26 REMARK 500 GLU A 316 -131.85 57.69 REMARK 500 VAL A 317 175.24 52.18 REMARK 500 VAL A 345 -83.03 -52.25 REMARK 500 VAL A 345 -79.42 -52.25 REMARK 500 UNK U 96 -71.78 -106.45 REMARK 500 UNK U 97 -118.90 95.09 REMARK 500 UNK U 98 -123.49 100.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 635 O REMARK 620 2 HOH A 635 O 94.5 REMARK 620 3 HOH A 662 O 91.1 174.1 REMARK 620 4 HOH A 662 O 84.6 92.0 90.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5B6L RELATED DB: PDB REMARK 900 5B6L CONTAINS THE SAME PROTEIN DBREF 5GND A 56 394 UNP P72780 HHOA_SYNY3 56 394 DBREF 5GND U 95 99 PDB 5GND 5GND 95 99 SEQADV 5GND MET A 55 UNP P72780 EXPRESSION TAG SEQADV 5GND LEU A 395 UNP P72780 EXPRESSION TAG SEQADV 5GND GLU A 396 UNP P72780 EXPRESSION TAG SEQADV 5GND HIS A 397 UNP P72780 EXPRESSION TAG SEQADV 5GND HIS A 398 UNP P72780 EXPRESSION TAG SEQADV 5GND HIS A 399 UNP P72780 EXPRESSION TAG SEQADV 5GND HIS A 400 UNP P72780 EXPRESSION TAG SEQADV 5GND HIS A 401 UNP P72780 EXPRESSION TAG SEQADV 5GND HIS A 402 UNP P72780 EXPRESSION TAG SEQRES 1 A 348 MET SER PHE VAL ALA ALA ALA VAL SER ARG SER GLY PRO SEQRES 2 A 348 ALA VAL VAL ARG ILE ASP THR GLU THR VAL VAL THR ARG SEQRES 3 A 348 ARG THR ASP PRO ILE LEU ASP ASP PRO PHE PHE GLN GLU SEQRES 4 A 348 PHE PHE GLY ARG SER PHE PRO VAL PRO PRO ARG GLU ARG SEQRES 5 A 348 ARG ILE ALA GLY GLN GLY SER GLY PHE ILE ILE ASP ASN SEQRES 6 A 348 SER GLY ILE ILE LEU THR ASN ALA HIS VAL VAL ASP GLY SEQRES 7 A 348 ALA SER LYS VAL VAL VAL THR LEU ARG ASP GLY ARG THR SEQRES 8 A 348 PHE ASP GLY GLN VAL ARG GLY THR ASP GLU VAL THR ASP SEQRES 9 A 348 LEU ALA VAL VAL LYS ILE GLU PRO GLN GLY SER ALA LEU SEQRES 10 A 348 PRO VAL ALA PRO LEU GLY THR SER SER ASN LEU GLN VAL SEQRES 11 A 348 GLY ASP TRP ALA ILE ALA VAL GLY ASN PRO VAL GLY LEU SEQRES 12 A 348 ASP ASN THR VAL THR LEU GLY ILE ILE SER THR LEU GLY SEQRES 13 A 348 ARG SER ALA ALA GLN ALA GLY ILE PRO ASP LYS ARG VAL SEQRES 14 A 348 GLU PHE ILE GLN THR ASP ALA ALA ILE ASN PRO GLY ASN SEQRES 15 A 348 SER GLY GLY PRO LEU LEU ASN ALA ARG GLY GLU VAL ILE SEQRES 16 A 348 GLY ILE ASN THR ALA ILE ARG ALA ASP ALA THR GLY ILE SEQRES 17 A 348 GLY PHE ALA ILE PRO ILE ASP GLN ALA LYS ALA ILE GLN SEQRES 18 A 348 ASN THR LEU ALA ALA GLY GLY THR VAL PRO HIS PRO TYR SEQRES 19 A 348 ILE GLY VAL GLN MET MET ASN ILE THR VAL ASP GLN ALA SEQRES 20 A 348 GLN GLN ASN ASN ARG ASN PRO ASN SER PRO PHE ILE ILE SEQRES 21 A 348 PRO GLU VAL ASP GLY ILE LEU VAL MET ARG VAL LEU PRO SEQRES 22 A 348 GLY THR PRO ALA GLU ARG ALA GLY ILE ARG ARG GLY ASP SEQRES 23 A 348 VAL ILE VAL ALA VAL ASP GLY THR PRO ILE SER ASP GLY SEQRES 24 A 348 ALA ARG LEU GLN ARG ILE VAL GLU GLN ALA GLY LEU ASN SEQRES 25 A 348 LYS ALA LEU LYS LEU ASP LEU LEU ARG GLY ASP ARG ARG SEQRES 26 A 348 LEU SER LEU THR VAL GLN THR ALA GLN LEU ARG ASN PRO SEQRES 27 A 348 THR SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 U 5 UNK UNK UNK UNK TRP HET ZN A 501 1 HET NA A 502 1 HETNAM ZN ZINC ION HETNAM NA SODIUM ION FORMUL 3 ZN ZN 2+ FORMUL 4 NA NA 1+ FORMUL 5 HOH *64(H2 O) HELIX 1 AA1 SER A 56 GLY A 66 1 11 HELIX 2 AA2 ILE A 268 ILE A 274 1 7 HELIX 3 AA3 ILE A 274 ALA A 280 1 7 HELIX 4 AA4 THR A 297 ASN A 305 1 9 HELIX 5 AA5 THR A 329 ALA A 334 1 6 HELIX 6 AA6 ASP A 352 ALA A 363 1 12 SHEET 1 AA1 7 THR A 145 PHE A 146 0 SHEET 2 AA1 7 VAL A 138 THR A 139 -1 N VAL A 138 O PHE A 146 SHEET 3 AA1 7 VAL A 69 ILE A 72 -1 N ARG A 71 O THR A 139 SHEET 4 AA1 7 GLY A 112 ASP A 118 -1 O GLY A 114 N VAL A 70 SHEET 5 AA1 7 ILE A 122 THR A 125 -1 O ILE A 122 N ILE A 117 SHEET 6 AA1 7 LEU A 159 LYS A 163 -1 O VAL A 162 N ILE A 123 SHEET 7 AA1 7 GLN A 149 ASP A 154 -1 N ASP A 154 O LEU A 159 SHEET 1 AA2 7 TRP A 187 GLY A 192 0 SHEET 2 AA2 7 THR A 200 LEU A 209 -1 O GLY A 204 N ALA A 188 SHEET 3 AA2 7 ILE A 226 THR A 228 -1 O GLN A 227 N SER A 207 SHEET 4 AA2 7 GLY A 263 PRO A 267 -1 O GLY A 263 N THR A 228 SHEET 5 AA2 7 VAL A 248 THR A 253 -1 N THR A 253 O PHE A 264 SHEET 6 AA2 7 PRO A 240 LEU A 242 -1 N LEU A 241 O ILE A 249 SHEET 7 AA2 7 TRP A 187 GLY A 192 -1 N ILE A 189 O LEU A 242 SHEET 1 AA3 2 PRO A 287 TYR A 288 0 SHEET 2 AA3 2 ALA A 387 GLN A 388 -1 O ALA A 387 N TYR A 288 SHEET 1 AA4 5 VAL A 291 ILE A 296 0 SHEET 2 AA4 5 GLY A 319 VAL A 325 -1 O GLY A 319 N ILE A 296 SHEET 3 AA4 5 VAL A 341 ALA A 344 -1 O ILE A 342 N ILE A 320 SHEET 4 AA4 5 ALA A 368 ARG A 375 -1 O ASP A 372 N VAL A 343 SHEET 5 AA4 5 ARG A 378 GLN A 385 -1 O LEU A 380 N LEU A 373 LINK ZN ZN A 501 O HOH A 635 1555 1555 2.50 LINK ZN ZN A 501 O HOH A 635 1555 2555 2.49 LINK ZN ZN A 501 O HOH A 662 1555 1555 2.68 LINK ZN ZN A 501 O HOH A 662 1555 2555 2.66 SITE 1 AC1 2 HOH A 635 HOH A 662 CRYST1 135.219 135.219 113.754 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007395 0.004270 0.000000 0.00000 SCALE2 0.000000 0.008539 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008791 0.00000