HEADER DNA BINDING PROTEIN/DNA 21-JUL-16 5GNJ TITLE STRUCTURE OF A TRANSCRIPTION FACTOR AND DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR MYC2; COMPND 3 CHAIN: G, I, A, B, E, F, M, N; COMPND 4 FRAGMENT: UNP RESIDUES 446-525; COMPND 5 SYNONYM: ATMYC2,BASIC HELIX-LOOP-HELIX PROTEIN 6,BHLH 6,PROTEIN COMPND 6 JASMONATE INSENSITIVE 1,R-HOMOLOGOUS ARABIDOPSIS PROTEIN 1,RAP-1, COMPND 7 TRANSCRIPTION FACTOR EN 38,Z-BOX BINDING FACTOR 1 PROTEIN,BHLH COMPND 8 TRANSCRIPTION FACTOR BHLH006,RD22BP1; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: DNA (5'-D(*AP*GP*GP*AP*AP*CP*AP*CP*GP*TP*GP*AP*CP*CP*C)- COMPND 12 3'); COMPND 13 CHAIN: K, C, H, O; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: DNA (5'-D(*TP*GP*GP*GP*TP*CP*AP*CP*GP*TP*GP*TP*TP*CP*C)- COMPND 17 3'); COMPND 18 CHAIN: L, D, J, P; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: MYC2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS TRANSCRIPTION FACTOR, DNA, COMPLEX, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.LIAN,Y.XU,X.SU REVDAT 3 20-MAR-24 5GNJ 1 REMARK REVDAT 2 06-DEC-17 5GNJ 1 JRNL REVDAT 1 10-MAY-17 5GNJ 0 JRNL AUTH T.F.LIAN,Y.P.XU,L.F.LI,X.D.SU JRNL TITL CRYSTAL STRUCTURE OF TETRAMERIC ARABIDOPSIS MYC2 REVEALS THE JRNL TITL 2 MECHANISM OF ENHANCED INTERACTION WITH DNA. JRNL REF CELL REP V. 19 1334 2017 JRNL REFN ESSN 2211-1247 JRNL PMID 28514654 JRNL DOI 10.1016/J.CELREP.2017.04.057 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 31841 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.6570 - 6.1778 0.91 2457 139 0.1875 0.2681 REMARK 3 2 6.1778 - 4.9049 0.95 2506 146 0.1950 0.2659 REMARK 3 3 4.9049 - 4.2853 0.96 2516 146 0.1678 0.2360 REMARK 3 4 4.2853 - 3.8937 0.94 2488 133 0.1790 0.2145 REMARK 3 5 3.8937 - 3.6147 0.95 2482 128 0.1979 0.2606 REMARK 3 6 3.6147 - 3.4016 0.95 2513 129 0.2028 0.2925 REMARK 3 7 3.4016 - 3.2313 0.97 2549 129 0.2055 0.2813 REMARK 3 8 3.2313 - 3.0907 0.98 2543 131 0.2596 0.3188 REMARK 3 9 3.0907 - 2.9717 0.98 2599 135 0.2648 0.3531 REMARK 3 10 2.9717 - 2.8692 0.98 2569 115 0.2687 0.3476 REMARK 3 11 2.8692 - 2.7795 0.98 2559 141 0.3098 0.3491 REMARK 3 12 2.7795 - 2.7000 0.93 2448 140 0.3559 0.4228 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 7115 REMARK 3 ANGLE : 1.435 10023 REMARK 3 CHIRALITY : 0.064 1163 REMARK 3 PLANARITY : 0.008 912 REMARK 3 DIHEDRAL : 23.713 2868 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN G AND RESID 505:524 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.894 -27.896 65.732 REMARK 3 T TENSOR REMARK 3 T11: 0.4905 T22: 0.3945 REMARK 3 T33: 0.4855 T12: -0.1246 REMARK 3 T13: -0.0318 T23: 0.0429 REMARK 3 L TENSOR REMARK 3 L11: 6.1188 L22: 2.8923 REMARK 3 L33: 3.4449 L12: 1.2544 REMARK 3 L13: -1.5357 L23: -3.1189 REMARK 3 S TENSOR REMARK 3 S11: 0.1883 S12: 0.0451 S13: -0.0583 REMARK 3 S21: -0.2984 S22: 0.1485 S23: -0.0736 REMARK 3 S31: 0.3149 S32: -0.6590 S33: -0.5449 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN K AND RESID 603:607 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4625 18.9967 25.5593 REMARK 3 T TENSOR REMARK 3 T11: 0.8622 T22: 0.4470 REMARK 3 T33: 0.9870 T12: 0.0788 REMARK 3 T13: 0.1199 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 5.4115 L22: 2.7070 REMARK 3 L33: 2.1346 L12: 3.0547 REMARK 3 L13: -1.5505 L23: 0.4895 REMARK 3 S TENSOR REMARK 3 S11: 0.7348 S12: 0.6526 S13: 0.2867 REMARK 3 S21: 2.9820 S22: -0.3758 S23: 1.4988 REMARK 3 S31: -0.5930 S32: -0.0580 S33: -0.2715 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN K AND RESID 608:616 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0798 2.5950 11.9151 REMARK 3 T TENSOR REMARK 3 T11: 0.5145 T22: 0.6511 REMARK 3 T33: 0.6370 T12: 0.0951 REMARK 3 T13: 0.0090 T23: 0.1379 REMARK 3 L TENSOR REMARK 3 L11: 6.2492 L22: 7.9566 REMARK 3 L33: 3.7922 L12: 1.6940 REMARK 3 L13: 0.0444 L23: 1.0245 REMARK 3 S TENSOR REMARK 3 S11: -0.3367 S12: 0.6075 S13: -0.1546 REMARK 3 S21: 0.0438 S22: -0.2963 S23: -1.3443 REMARK 3 S31: 0.6751 S32: 1.1517 S33: 0.5902 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN L AND RESID 804:817 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4055 4.8467 15.0865 REMARK 3 T TENSOR REMARK 3 T11: 0.5660 T22: 0.5494 REMARK 3 T33: 0.4635 T12: -0.1639 REMARK 3 T13: -0.1249 T23: -0.1491 REMARK 3 L TENSOR REMARK 3 L11: 6.1310 L22: 3.9091 REMARK 3 L33: 7.6305 L12: -0.7025 REMARK 3 L13: -0.6782 L23: -1.9316 REMARK 3 S TENSOR REMARK 3 S11: 0.3770 S12: 1.5663 S13: -0.0475 REMARK 3 S21: -0.4695 S22: -0.6033 S23: -0.0685 REMARK 3 S31: 0.6425 S32: -0.0109 S33: 0.2770 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 505:525 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.459 -10.736 65.819 REMARK 3 T TENSOR REMARK 3 T11: 0.4832 T22: 0.4374 REMARK 3 T33: 0.4860 T12: -0.1600 REMARK 3 T13: 0.1012 T23: -0.0932 REMARK 3 L TENSOR REMARK 3 L11: 5.6146 L22: 5.4332 REMARK 3 L33: 4.9174 L12: 0.5313 REMARK 3 L13: 0.8047 L23: 0.0890 REMARK 3 S TENSOR REMARK 3 S11: -0.1005 S12: 0.1979 S13: 0.3536 REMARK 3 S21: -0.4830 S22: 0.1165 S23: -0.3285 REMARK 3 S31: -0.2142 S32: 0.4043 S33: 0.0389 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN C AND RESID 603:607 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.3410 -58.1430 25.5108 REMARK 3 T TENSOR REMARK 3 T11: 0.6039 T22: 0.5010 REMARK 3 T33: 0.6294 T12: -0.0200 REMARK 3 T13: -0.0239 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 3.5787 L22: 2.5365 REMARK 3 L33: 2.9036 L12: 1.9740 REMARK 3 L13: 0.8733 L23: 2.3536 REMARK 3 S TENSOR REMARK 3 S11: -0.1045 S12: 1.2542 S13: 0.1586 REMARK 3 S21: 2.2693 S22: -0.3250 S23: 1.5271 REMARK 3 S31: 0.4102 S32: 0.4909 S33: 0.2953 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN C AND RESID 608:616 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.9729 -41.9897 12.1144 REMARK 3 T TENSOR REMARK 3 T11: 0.9098 T22: 0.9232 REMARK 3 T33: 0.9001 T12: -0.0584 REMARK 3 T13: -0.1601 T23: -0.2197 REMARK 3 L TENSOR REMARK 3 L11: 6.0668 L22: 7.3604 REMARK 3 L33: 4.0830 L12: -0.9278 REMARK 3 L13: -0.2689 L23: 2.8327 REMARK 3 S TENSOR REMARK 3 S11: -0.8855 S12: 1.1921 S13: -0.0639 REMARK 3 S21: -0.4966 S22: -0.4518 S23: 1.0047 REMARK 3 S31: -2.0904 S32: -1.2545 S33: 1.1164 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN D AND RESID 804:817 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.7101 -43.9007 14.8807 REMARK 3 T TENSOR REMARK 3 T11: 0.6928 T22: 0.7745 REMARK 3 T33: 0.1968 T12: -0.1232 REMARK 3 T13: -0.0153 T23: 0.0472 REMARK 3 L TENSOR REMARK 3 L11: 8.0843 L22: 4.9211 REMARK 3 L33: 3.4988 L12: 1.2623 REMARK 3 L13: 0.2178 L23: 1.4120 REMARK 3 S TENSOR REMARK 3 S11: 0.1678 S12: 1.6212 S13: -0.4491 REMARK 3 S21: 0.0472 S22: -0.4780 S23: 0.8327 REMARK 3 S31: -0.5807 S32: 0.3908 S33: 0.2823 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN E AND RESID 505:525 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.712 -14.749 65.233 REMARK 3 T TENSOR REMARK 3 T11: 0.5620 T22: 0.6693 REMARK 3 T33: 0.5643 T12: -0.2847 REMARK 3 T13: -0.0682 T23: 0.1042 REMARK 3 L TENSOR REMARK 3 L11: 3.7589 L22: 2.9021 REMARK 3 L33: 8.3422 L12: -0.9037 REMARK 3 L13: 3.1893 L23: 2.5124 REMARK 3 S TENSOR REMARK 3 S11: -0.2658 S12: 1.0526 S13: 0.4234 REMARK 3 S21: -0.3254 S22: 0.2073 S23: -0.0223 REMARK 3 S31: -1.2258 S32: 1.1261 S33: 0.1143 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN H AND RESID 603:610 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.3299 -42.7005 12.4285 REMARK 3 T TENSOR REMARK 3 T11: 1.4626 T22: 0.8775 REMARK 3 T33: 1.0024 T12: 0.0449 REMARK 3 T13: 0.0385 T23: -0.0964 REMARK 3 L TENSOR REMARK 3 L11: 3.4425 L22: 2.6958 REMARK 3 L33: 3.1749 L12: -2.7356 REMARK 3 L13: 1.1285 L23: 0.0335 REMARK 3 S TENSOR REMARK 3 S11: 0.6911 S12: 1.6711 S13: -1.4540 REMARK 3 S21: -1.3639 S22: -1.5007 S23: 1.2750 REMARK 3 S31: 2.2728 S32: 0.8423 S33: 0.7120 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN H AND RESID 611:616 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.3744 -25.7443 0.9317 REMARK 3 T TENSOR REMARK 3 T11: 1.1194 T22: 1.1734 REMARK 3 T33: 1.2190 T12: 0.2704 REMARK 3 T13: -0.3052 T23: -0.0488 REMARK 3 L TENSOR REMARK 3 L11: 7.4328 L22: 2.5295 REMARK 3 L33: 9.9727 L12: -0.7219 REMARK 3 L13: 2.2185 L23: 1.7153 REMARK 3 S TENSOR REMARK 3 S11: -0.9915 S12: 0.2215 S13: 2.1144 REMARK 3 S21: -0.1331 S22: -0.2890 S23: 1.1792 REMARK 3 S31: -2.5326 S32: -0.4262 S33: 1.2886 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: ( CHAIN J AND RESID 805:812 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.4194 -26.2934 6.0116 REMARK 3 T TENSOR REMARK 3 T11: 1.3004 T22: 0.7506 REMARK 3 T33: 0.8067 T12: -0.0925 REMARK 3 T13: -0.1970 T23: 0.1339 REMARK 3 L TENSOR REMARK 3 L11: 5.5816 L22: 8.3532 REMARK 3 L33: 2.7869 L12: -1.9032 REMARK 3 L13: -3.2022 L23: 0.8790 REMARK 3 S TENSOR REMARK 3 S11: 0.0594 S12: 1.1317 S13: 0.9740 REMARK 3 S21: -0.3851 S22: -1.1213 S23: 0.5618 REMARK 3 S31: -1.8465 S32: 0.5250 S33: 1.1422 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: ( CHAIN J AND RESID 813:817 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.9833 -42.8536 8.9656 REMARK 3 T TENSOR REMARK 3 T11: 1.3497 T22: 1.7597 REMARK 3 T33: 0.9658 T12: 0.5504 REMARK 3 T13: 0.0856 T23: 0.2281 REMARK 3 L TENSOR REMARK 3 L11: 3.8120 L22: 8.8786 REMARK 3 L33: 5.1027 L12: -3.7095 REMARK 3 L13: 4.1823 L23: -5.6276 REMARK 3 S TENSOR REMARK 3 S11: -0.0853 S12: 0.4371 S13: -1.5290 REMARK 3 S21: 2.5061 S22: 0.2800 S23: -0.2653 REMARK 3 S31: 1.6243 S32: 5.5067 S33: -0.4815 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: ( CHAIN M AND RESID 505:524 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.576 -23.867 64.707 REMARK 3 T TENSOR REMARK 3 T11: 0.8799 T22: 0.8633 REMARK 3 T33: 0.4865 T12: -0.4213 REMARK 3 T13: -0.0010 T23: 0.0475 REMARK 3 L TENSOR REMARK 3 L11: 4.6420 L22: 5.0097 REMARK 3 L33: 2.7162 L12: 0.3552 REMARK 3 L13: -0.9634 L23: 0.8922 REMARK 3 S TENSOR REMARK 3 S11: -0.5789 S12: 0.7953 S13: -0.3503 REMARK 3 S21: -0.6122 S22: 0.3005 S23: 0.4056 REMARK 3 S31: 0.5577 S32: 0.9799 S33: 0.2676 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: ( CHAIN O AND RESID 604:616 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8622 -9.6338 6.2631 REMARK 3 T TENSOR REMARK 3 T11: 1.2062 T22: 1.0814 REMARK 3 T33: 0.6160 T12: -0.1541 REMARK 3 T13: 0.0433 T23: 0.3293 REMARK 3 L TENSOR REMARK 3 L11: 7.5389 L22: 4.3610 REMARK 3 L33: 5.5835 L12: 3.2181 REMARK 3 L13: -1.3655 L23: 2.9879 REMARK 3 S TENSOR REMARK 3 S11: 0.3541 S12: 1.8746 S13: 0.6265 REMARK 3 S21: -0.2049 S22: -0.1945 S23: 0.1009 REMARK 3 S31: -0.9061 S32: 0.0581 S33: -0.1977 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: ( CHAIN P AND RESID 805:811 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1487 -18.1185 7.3624 REMARK 3 T TENSOR REMARK 3 T11: 1.3358 T22: 1.0464 REMARK 3 T33: 1.0810 T12: -0.2156 REMARK 3 T13: 0.0828 T23: -0.0703 REMARK 3 L TENSOR REMARK 3 L11: 3.4418 L22: 5.3205 REMARK 3 L33: 3.5650 L12: -1.0960 REMARK 3 L13: 3.1129 L23: 0.8816 REMARK 3 S TENSOR REMARK 3 S11: 0.2456 S12: 1.6380 S13: -0.9213 REMARK 3 S21: -0.3165 S22: -0.6283 S23: 0.4991 REMARK 3 S31: 1.6642 S32: 0.4327 S33: 0.3328 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: ( CHAIN P AND RESID 812:816 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8126 -3.6042 3.7533 REMARK 3 T TENSOR REMARK 3 T11: 1.3953 T22: 1.9588 REMARK 3 T33: 0.8910 T12: 0.1594 REMARK 3 T13: -0.0828 T23: 0.4616 REMARK 3 L TENSOR REMARK 3 L11: 5.6823 L22: 6.3375 REMARK 3 L33: 2.0112 L12: 0.8044 REMARK 3 L13: 2.8411 L23: 0.9153 REMARK 3 S TENSOR REMARK 3 S11: 0.6674 S12: 2.4328 S13: -0.2867 REMARK 3 S21: 0.1592 S22: 0.1221 S23: 0.6683 REMARK 3 S31: -2.1037 S32: -2.1506 S33: -0.3527 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2801 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN E REMARK 3 ATOM PAIRS NUMBER : 2801 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN F REMARK 3 ATOM PAIRS NUMBER : 2801 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 4 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN G REMARK 3 ATOM PAIRS NUMBER : 2801 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 5 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN I REMARK 3 ATOM PAIRS NUMBER : 2801 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 6 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN M REMARK 3 ATOM PAIRS NUMBER : 2801 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 7 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN N REMARK 3 ATOM PAIRS NUMBER : 2801 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C REMARK 3 SELECTION : CHAIN H REMARK 3 ATOM PAIRS NUMBER : 532 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN C REMARK 3 SELECTION : CHAIN K REMARK 3 ATOM PAIRS NUMBER : 532 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: CHAIN C REMARK 3 SELECTION : CHAIN O REMARK 3 ATOM PAIRS NUMBER : 532 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN D REMARK 3 SELECTION : CHAIN J REMARK 3 ATOM PAIRS NUMBER : 514 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN D REMARK 3 SELECTION : CHAIN L REMARK 3 ATOM PAIRS NUMBER : 514 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: CHAIN D REMARK 3 SELECTION : CHAIN P REMARK 3 ATOM PAIRS NUMBER : 514 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5GNJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1300001114. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32765 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.660 REMARK 200 RESOLUTION RANGE LOW (A) : 49.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE DIHYDRATE, 0.1 REMARK 280 M SODIUM ACETATE TRIHYDRATE PH 4.6, 20% V/V 2-PROPANOL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.85000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, I, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, H, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: M, N, O, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET G 445 REMARK 465 GLY G 446 REMARK 465 ARG G 447 REMARK 465 GLU G 448 REMARK 465 GLU G 449 REMARK 465 PRO G 450 REMARK 465 LEU G 451 REMARK 465 ARG G 525 REMARK 465 LEU G 526 REMARK 465 GLU G 527 REMARK 465 HIS G 528 REMARK 465 HIS G 529 REMARK 465 HIS G 530 REMARK 465 HIS G 531 REMARK 465 HIS G 532 REMARK 465 HIS G 533 REMARK 465 MET I 445 REMARK 465 GLY I 446 REMARK 465 ARG I 447 REMARK 465 GLU I 448 REMARK 465 GLY I 524 REMARK 465 ARG I 525 REMARK 465 LEU I 526 REMARK 465 GLU I 527 REMARK 465 HIS I 528 REMARK 465 HIS I 529 REMARK 465 HIS I 530 REMARK 465 HIS I 531 REMARK 465 HIS I 532 REMARK 465 HIS I 533 REMARK 465 DC K 617 REMARK 465 DT L 803 REMARK 465 MET A 445 REMARK 465 GLY A 446 REMARK 465 ARG A 447 REMARK 465 GLU A 448 REMARK 465 GLU A 449 REMARK 465 PRO A 450 REMARK 465 LEU A 451 REMARK 465 LEU A 526 REMARK 465 GLU A 527 REMARK 465 HIS A 528 REMARK 465 HIS A 529 REMARK 465 HIS A 530 REMARK 465 HIS A 531 REMARK 465 HIS A 532 REMARK 465 HIS A 533 REMARK 465 MET B 445 REMARK 465 GLY B 446 REMARK 465 ARG B 447 REMARK 465 GLU B 448 REMARK 465 LEU B 526 REMARK 465 GLU B 527 REMARK 465 HIS B 528 REMARK 465 HIS B 529 REMARK 465 HIS B 530 REMARK 465 HIS B 531 REMARK 465 HIS B 532 REMARK 465 HIS B 533 REMARK 465 DC C 617 REMARK 465 DT D 803 REMARK 465 MET E 445 REMARK 465 GLY E 446 REMARK 465 ARG E 447 REMARK 465 GLU E 448 REMARK 465 GLU E 449 REMARK 465 PRO E 450 REMARK 465 LEU E 451 REMARK 465 SER E 479 REMARK 465 LEU E 526 REMARK 465 GLU E 527 REMARK 465 HIS E 528 REMARK 465 HIS E 529 REMARK 465 HIS E 530 REMARK 465 HIS E 531 REMARK 465 HIS E 532 REMARK 465 HIS E 533 REMARK 465 MET F 445 REMARK 465 GLY F 446 REMARK 465 ARG F 447 REMARK 465 GLU F 448 REMARK 465 GLU F 449 REMARK 465 PRO F 450 REMARK 465 LEU F 451 REMARK 465 ARG F 525 REMARK 465 LEU F 526 REMARK 465 GLU F 527 REMARK 465 HIS F 528 REMARK 465 HIS F 529 REMARK 465 HIS F 530 REMARK 465 HIS F 531 REMARK 465 HIS F 532 REMARK 465 HIS F 533 REMARK 465 DC H 617 REMARK 465 DT J 803 REMARK 465 DG J 804 REMARK 465 MET M 445 REMARK 465 GLY M 446 REMARK 465 ARG M 447 REMARK 465 GLU M 448 REMARK 465 GLU M 449 REMARK 465 PRO M 450 REMARK 465 LEU M 451 REMARK 465 ARG M 525 REMARK 465 LEU M 526 REMARK 465 GLU M 527 REMARK 465 HIS M 528 REMARK 465 HIS M 529 REMARK 465 HIS M 530 REMARK 465 HIS M 531 REMARK 465 HIS M 532 REMARK 465 HIS M 533 REMARK 465 MET N 445 REMARK 465 GLY N 446 REMARK 465 ARG N 447 REMARK 465 GLU N 448 REMARK 465 GLU N 449 REMARK 465 PRO N 450 REMARK 465 LEU N 451 REMARK 465 ARG N 525 REMARK 465 LEU N 526 REMARK 465 GLU N 527 REMARK 465 HIS N 528 REMARK 465 HIS N 529 REMARK 465 HIS N 530 REMARK 465 HIS N 531 REMARK 465 HIS N 532 REMARK 465 HIS N 533 REMARK 465 DA O 603 REMARK 465 DC O 617 REMARK 465 DT P 803 REMARK 465 DG P 804 REMARK 465 DC P 817 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU G 462 CD OE1 OE2 REMARK 470 LYS G 480 CG CD CE NZ REMARK 470 GLU G 496 CG CD OE1 OE2 REMARK 470 LYS G 512 CG CD CE NZ REMARK 470 LYS G 519 CD CE NZ REMARK 470 GLU I 449 CG CD OE1 OE2 REMARK 470 LYS I 480 CG CD CE NZ REMARK 470 ASP I 482 CG OD1 OD2 REMARK 470 ASP I 489 CG OD1 OD2 REMARK 470 LYS I 500 CD CE NZ REMARK 470 GLU I 505 CG CD OE1 OE2 REMARK 470 DA K 603 O5' REMARK 470 DG L 804 P OP1 OP2 REMARK 470 DT L 807 C7 REMARK 470 DT L 814 C7 REMARK 470 LYS A 480 CG CD CE NZ REMARK 470 LYS A 503 CG CD CE NZ REMARK 470 ARG A 525 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 477 CG OD1 ND2 REMARK 470 LYS B 480 CG CD CE NZ REMARK 470 ASP B 482 CG OD1 OD2 REMARK 470 ARG B 525 CG CD NE CZ NH1 NH2 REMARK 470 DA C 603 O5' REMARK 470 DG D 804 P OP1 OP2 REMARK 470 DT D 807 C7 REMARK 470 DT D 814 C7 REMARK 470 GLU E 455 CG CD OE1 OE2 REMARK 470 LYS E 480 CG CD CE NZ REMARK 470 MET E 481 CG SD CE REMARK 470 GLU E 496 CG CD OE1 OE2 REMARK 470 GLN E 514 CG CD OE1 NE2 REMARK 470 ARG E 525 CG CD NE CZ NH1 NH2 REMARK 470 GLU F 462 CG CD OE1 OE2 REMARK 470 ASN F 477 CG OD1 ND2 REMARK 470 LYS F 480 CG CD CE NZ REMARK 470 ASP F 482 CG OD1 OD2 REMARK 470 GLU F 516 CD OE1 OE2 REMARK 470 DA H 603 O5' REMARK 470 DT J 807 C7 REMARK 470 DT J 814 C7 REMARK 470 GLN M 459 CG CD OE1 NE2 REMARK 470 ARG M 461 CG CD NE CZ NH1 NH2 REMARK 470 LYS M 480 CG CD CE NZ REMARK 470 GLU M 496 CG CD OE1 OE2 REMARK 470 LYS N 480 CG CD CE NZ REMARK 470 DG P 805 P OP1 OP2 O5' REMARK 470 DT P 807 C7 REMARK 470 DT P 814 C7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU E 457 O HOH E 601 2.00 REMARK 500 O6 DG D 811 O HOH D 901 2.09 REMARK 500 O6 DG L 811 O HOH L 901 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG K 604 O3' DG K 604 C3' -0.092 REMARK 500 DC K 608 O3' DC K 608 C3' -0.036 REMARK 500 DG C 604 O3' DG C 604 C3' -0.061 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS I 480 N - CA - C ANGL. DEV. = -18.1 DEGREES REMARK 500 DG L 806 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA C 607 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC C 616 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG H 604 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT J 807 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT J 814 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC J 817 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG O 605 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG O 613 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT P 807 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN G 477 32.87 70.52 REMARK 500 PRO I 450 44.70 -76.89 REMARK 500 ASN I 452 -3.24 -59.61 REMARK 500 PRO B 450 43.25 -74.31 REMARK 500 ASN B 477 29.64 46.86 REMARK 500 ASN E 477 -129.81 56.77 REMARK 500 ASN F 477 28.98 -144.88 REMARK 500 LYS F 480 78.78 -117.03 REMARK 500 ALA F 523 22.37 -75.60 REMARK 500 LYS M 480 11.85 81.16 REMARK 500 ASN N 477 40.55 -100.06 REMARK 500 MET N 481 130.88 -174.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH I 609 DISTANCE = 7.56 ANGSTROMS REMARK 525 HOH J 905 DISTANCE = 7.26 ANGSTROMS DBREF 5GNJ G 446 525 UNP Q39204 MYC2_ARATH 446 525 DBREF 5GNJ I 446 525 UNP Q39204 MYC2_ARATH 446 525 DBREF 5GNJ K 603 617 PDB 5GNJ 5GNJ 603 617 DBREF 5GNJ L 803 817 PDB 5GNJ 5GNJ 803 817 DBREF 5GNJ A 446 525 UNP Q39204 MYC2_ARATH 446 525 DBREF 5GNJ B 446 525 UNP Q39204 MYC2_ARATH 446 525 DBREF 5GNJ C 603 617 PDB 5GNJ 5GNJ 603 617 DBREF 5GNJ D 803 817 PDB 5GNJ 5GNJ 803 817 DBREF 5GNJ E 446 525 UNP Q39204 MYC2_ARATH 446 525 DBREF 5GNJ F 446 525 UNP Q39204 MYC2_ARATH 446 525 DBREF 5GNJ H 603 617 PDB 5GNJ 5GNJ 603 617 DBREF 5GNJ J 803 817 PDB 5GNJ 5GNJ 803 817 DBREF 5GNJ M 446 525 UNP Q39204 MYC2_ARATH 446 525 DBREF 5GNJ N 446 525 UNP Q39204 MYC2_ARATH 446 525 DBREF 5GNJ O 603 617 PDB 5GNJ 5GNJ 603 617 DBREF 5GNJ P 803 817 PDB 5GNJ 5GNJ 803 817 SEQADV 5GNJ MET G 445 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ LEU G 526 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ GLU G 527 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS G 528 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS G 529 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS G 530 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS G 531 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS G 532 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS G 533 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ MET I 445 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ LEU I 526 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ GLU I 527 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS I 528 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS I 529 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS I 530 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS I 531 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS I 532 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS I 533 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ MET A 445 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ LEU A 526 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ GLU A 527 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS A 528 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS A 529 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS A 530 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS A 531 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS A 532 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS A 533 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ MET B 445 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ LEU B 526 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ GLU B 527 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS B 528 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS B 529 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS B 530 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS B 531 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS B 532 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS B 533 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ MET E 445 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ LEU E 526 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ GLU E 527 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS E 528 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS E 529 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS E 530 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS E 531 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS E 532 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS E 533 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ MET F 445 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ LEU F 526 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ GLU F 527 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS F 528 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS F 529 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS F 530 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS F 531 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS F 532 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS F 533 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ MET M 445 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ LEU M 526 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ GLU M 527 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS M 528 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS M 529 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS M 530 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS M 531 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS M 532 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS M 533 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ MET N 445 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ LEU N 526 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ GLU N 527 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS N 528 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS N 529 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS N 530 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS N 531 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS N 532 UNP Q39204 EXPRESSION TAG SEQADV 5GNJ HIS N 533 UNP Q39204 EXPRESSION TAG SEQRES 1 G 89 MET GLY ARG GLU GLU PRO LEU ASN HIS VAL GLU ALA GLU SEQRES 2 G 89 ARG GLN ARG ARG GLU LYS LEU ASN GLN ARG PHE TYR ALA SEQRES 3 G 89 LEU ARG ALA VAL VAL PRO ASN VAL SER LYS MET ASP LYS SEQRES 4 G 89 ALA SER LEU LEU GLY ASP ALA ILE ALA TYR ILE ASN GLU SEQRES 5 G 89 LEU LYS SER LYS VAL VAL LYS THR GLU SER GLU LYS LEU SEQRES 6 G 89 GLN ILE LYS ASN GLN LEU GLU GLU VAL LYS LEU GLU LEU SEQRES 7 G 89 ALA GLY ARG LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 I 89 MET GLY ARG GLU GLU PRO LEU ASN HIS VAL GLU ALA GLU SEQRES 2 I 89 ARG GLN ARG ARG GLU LYS LEU ASN GLN ARG PHE TYR ALA SEQRES 3 I 89 LEU ARG ALA VAL VAL PRO ASN VAL SER LYS MET ASP LYS SEQRES 4 I 89 ALA SER LEU LEU GLY ASP ALA ILE ALA TYR ILE ASN GLU SEQRES 5 I 89 LEU LYS SER LYS VAL VAL LYS THR GLU SER GLU LYS LEU SEQRES 6 I 89 GLN ILE LYS ASN GLN LEU GLU GLU VAL LYS LEU GLU LEU SEQRES 7 I 89 ALA GLY ARG LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 K 15 DA DG DG DA DA DC DA DC DG DT DG DA DC SEQRES 2 K 15 DC DC SEQRES 1 L 15 DT DG DG DG DT DC DA DC DG DT DG DT DT SEQRES 2 L 15 DC DC SEQRES 1 A 89 MET GLY ARG GLU GLU PRO LEU ASN HIS VAL GLU ALA GLU SEQRES 2 A 89 ARG GLN ARG ARG GLU LYS LEU ASN GLN ARG PHE TYR ALA SEQRES 3 A 89 LEU ARG ALA VAL VAL PRO ASN VAL SER LYS MET ASP LYS SEQRES 4 A 89 ALA SER LEU LEU GLY ASP ALA ILE ALA TYR ILE ASN GLU SEQRES 5 A 89 LEU LYS SER LYS VAL VAL LYS THR GLU SER GLU LYS LEU SEQRES 6 A 89 GLN ILE LYS ASN GLN LEU GLU GLU VAL LYS LEU GLU LEU SEQRES 7 A 89 ALA GLY ARG LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 89 MET GLY ARG GLU GLU PRO LEU ASN HIS VAL GLU ALA GLU SEQRES 2 B 89 ARG GLN ARG ARG GLU LYS LEU ASN GLN ARG PHE TYR ALA SEQRES 3 B 89 LEU ARG ALA VAL VAL PRO ASN VAL SER LYS MET ASP LYS SEQRES 4 B 89 ALA SER LEU LEU GLY ASP ALA ILE ALA TYR ILE ASN GLU SEQRES 5 B 89 LEU LYS SER LYS VAL VAL LYS THR GLU SER GLU LYS LEU SEQRES 6 B 89 GLN ILE LYS ASN GLN LEU GLU GLU VAL LYS LEU GLU LEU SEQRES 7 B 89 ALA GLY ARG LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 15 DA DG DG DA DA DC DA DC DG DT DG DA DC SEQRES 2 C 15 DC DC SEQRES 1 D 15 DT DG DG DG DT DC DA DC DG DT DG DT DT SEQRES 2 D 15 DC DC SEQRES 1 E 89 MET GLY ARG GLU GLU PRO LEU ASN HIS VAL GLU ALA GLU SEQRES 2 E 89 ARG GLN ARG ARG GLU LYS LEU ASN GLN ARG PHE TYR ALA SEQRES 3 E 89 LEU ARG ALA VAL VAL PRO ASN VAL SER LYS MET ASP LYS SEQRES 4 E 89 ALA SER LEU LEU GLY ASP ALA ILE ALA TYR ILE ASN GLU SEQRES 5 E 89 LEU LYS SER LYS VAL VAL LYS THR GLU SER GLU LYS LEU SEQRES 6 E 89 GLN ILE LYS ASN GLN LEU GLU GLU VAL LYS LEU GLU LEU SEQRES 7 E 89 ALA GLY ARG LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 F 89 MET GLY ARG GLU GLU PRO LEU ASN HIS VAL GLU ALA GLU SEQRES 2 F 89 ARG GLN ARG ARG GLU LYS LEU ASN GLN ARG PHE TYR ALA SEQRES 3 F 89 LEU ARG ALA VAL VAL PRO ASN VAL SER LYS MET ASP LYS SEQRES 4 F 89 ALA SER LEU LEU GLY ASP ALA ILE ALA TYR ILE ASN GLU SEQRES 5 F 89 LEU LYS SER LYS VAL VAL LYS THR GLU SER GLU LYS LEU SEQRES 6 F 89 GLN ILE LYS ASN GLN LEU GLU GLU VAL LYS LEU GLU LEU SEQRES 7 F 89 ALA GLY ARG LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 H 15 DA DG DG DA DA DC DA DC DG DT DG DA DC SEQRES 2 H 15 DC DC SEQRES 1 J 15 DT DG DG DG DT DC DA DC DG DT DG DT DT SEQRES 2 J 15 DC DC SEQRES 1 M 89 MET GLY ARG GLU GLU PRO LEU ASN HIS VAL GLU ALA GLU SEQRES 2 M 89 ARG GLN ARG ARG GLU LYS LEU ASN GLN ARG PHE TYR ALA SEQRES 3 M 89 LEU ARG ALA VAL VAL PRO ASN VAL SER LYS MET ASP LYS SEQRES 4 M 89 ALA SER LEU LEU GLY ASP ALA ILE ALA TYR ILE ASN GLU SEQRES 5 M 89 LEU LYS SER LYS VAL VAL LYS THR GLU SER GLU LYS LEU SEQRES 6 M 89 GLN ILE LYS ASN GLN LEU GLU GLU VAL LYS LEU GLU LEU SEQRES 7 M 89 ALA GLY ARG LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 N 89 MET GLY ARG GLU GLU PRO LEU ASN HIS VAL GLU ALA GLU SEQRES 2 N 89 ARG GLN ARG ARG GLU LYS LEU ASN GLN ARG PHE TYR ALA SEQRES 3 N 89 LEU ARG ALA VAL VAL PRO ASN VAL SER LYS MET ASP LYS SEQRES 4 N 89 ALA SER LEU LEU GLY ASP ALA ILE ALA TYR ILE ASN GLU SEQRES 5 N 89 LEU LYS SER LYS VAL VAL LYS THR GLU SER GLU LYS LEU SEQRES 6 N 89 GLN ILE LYS ASN GLN LEU GLU GLU VAL LYS LEU GLU LEU SEQRES 7 N 89 ALA GLY ARG LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 O 15 DA DG DG DA DA DC DA DC DG DT DG DA DC SEQRES 2 O 15 DC DC SEQRES 1 P 15 DT DG DG DG DT DC DA DC DG DT DG DT DT SEQRES 2 P 15 DC DC FORMUL 17 HOH *62(H2 O) HELIX 1 AA1 HIS G 453 ALA G 473 1 21 HELIX 2 AA2 ASP G 482 ALA G 523 1 42 HELIX 3 AA3 PRO I 450 ALA I 473 1 24 HELIX 4 AA4 ASP I 482 LEU I 522 1 41 HELIX 5 AA5 HIS A 453 VAL A 475 1 23 HELIX 6 AA6 ASP A 482 ARG A 525 1 44 HELIX 7 AA7 PRO B 450 ALA B 473 1 24 HELIX 8 AA8 ASP B 482 LEU B 522 1 41 HELIX 9 AA9 HIS E 453 VAL E 475 1 23 HELIX 10 AB1 ASP E 482 ALA E 523 1 42 HELIX 11 AB2 HIS F 453 VAL F 475 1 23 HELIX 12 AB3 ASP F 482 ALA F 523 1 42 HELIX 13 AB4 HIS M 453 ARG M 472 1 20 HELIX 14 AB5 ASP M 482 ALA M 523 1 42 HELIX 15 AB6 HIS N 453 VAL N 475 1 23 HELIX 16 AB7 ASP N 482 ALA N 523 1 42 CISPEP 1 ASN G 452 HIS G 453 0 -9.05 CISPEP 2 GLY B 524 ARG B 525 0 1.57 CISPEP 3 VAL N 478 SER N 479 0 1.20 CISPEP 4 SER N 479 LYS N 480 0 -21.40 CRYST1 77.100 79.700 102.800 90.00 105.00 90.00 P 1 21 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012970 0.000000 0.003475 0.00000 SCALE2 0.000000 0.012547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010071 0.00000