HEADER HYDROLASE 25-JUL-16 5GNX TITLE THE E171Q MUTANT STRUCTURE OF BGL6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.21; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METAGENOME; SOURCE 3 ORGANISM_TAXID: 256318; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) KEYWDS GLYCOSIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.XIE,P.PANG,L.C.CAO,Y.H.LIU,Z.WANG REVDAT 5 08-NOV-23 5GNX 1 HETSYN REVDAT 4 29-JUL-20 5GNX 1 COMPND REMARK HETNAM SITE REVDAT 3 06-DEC-17 5GNX 1 JRNL REVDAT 2 04-OCT-17 5GNX 1 REMARK REVDAT 1 12-APR-17 5GNX 0 JRNL AUTH P.PANG,L.C.CAO,Y.H.LIU,W.XIE,Z.WANG JRNL TITL STRUCTURES OF A GLUCOSE-TOLERANT BETA-GLUCOSIDASE PROVIDE JRNL TITL 2 INSIGHTS INTO ITS MECHANISM. JRNL REF J. STRUCT. BIOL. V. 198 154 2017 JRNL REFN ESSN 1095-8657 JRNL PMID 28189793 JRNL DOI 10.1016/J.JSB.2017.02.001 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 79066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.124 REMARK 3 R VALUE (WORKING SET) : 0.123 REMARK 3 FREE R VALUE : 0.151 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4151 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5633 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.1280 REMARK 3 BIN FREE R VALUE SET COUNT : 288 REMARK 3 BIN FREE R VALUE : 0.1750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7184 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 903 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.81000 REMARK 3 B22 (A**2) : -2.15000 REMARK 3 B33 (A**2) : -0.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.676 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7466 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6789 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10174 ; 1.442 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15564 ; 2.356 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 904 ; 5.666 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 373 ;32.179 ;22.976 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1121 ;11.822 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 63 ;16.240 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1039 ; 0.224 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8579 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1860 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3613 ; 1.853 ; 1.716 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3612 ; 1.847 ; 1.715 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4518 ; 2.343 ; 2.556 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4519 ; 2.344 ; 2.557 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3853 ; 3.302 ; 2.001 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3830 ; 3.303 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5623 ; 4.773 ; 2.870 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9688 ; 5.842 ;15.770 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 9675 ; 5.843 ;15.761 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5GNX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1300001164. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PHENIX REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84462 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 48.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.08100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 25.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1OIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 8K, 600 MM NACL, 100 MM TRIS REMARK 280 -HCL PH 8.0, 1M GLUCOSE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.62350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.84850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.62350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 47.84850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 ASP A 4 REMARK 465 LEU A 456 REMARK 465 LYS A 457 REMARK 465 LEU A 458 REMARK 465 HIS A 459 REMARK 465 HIS A 460 REMARK 465 HIS A 461 REMARK 465 HIS A 462 REMARK 465 HIS A 463 REMARK 465 HIS A 464 REMARK 465 MET B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 ASP B 4 REMARK 465 THR B 5 REMARK 465 ALA B 6 REMARK 465 LEU B 456 REMARK 465 LYS B 457 REMARK 465 LEU B 458 REMARK 465 HIS B 459 REMARK 465 HIS B 460 REMARK 465 HIS B 461 REMARK 465 HIS B 462 REMARK 465 HIS B 463 REMARK 465 HIS B 464 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 265 CG CD OE1 OE2 REMARK 470 THR A 455 OG1 CG2 REMARK 470 ARG B 7 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 THR B 455 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 171 O1 BGC B 503 1.55 REMARK 500 O HOH A 612 O HOH A 722 1.89 REMARK 500 O HOH B 813 O HOH B 1012 1.95 REMARK 500 O HOH A 709 O HOH A 938 1.98 REMARK 500 O HOH A 928 O HOH A 932 1.98 REMARK 500 O HOH B 619 O HOH B 761 1.99 REMARK 500 O HOH B 936 O HOH B 938 2.04 REMARK 500 O HOH B 911 O HOH B 946 2.05 REMARK 500 O HOH A 909 O HOH A 964 2.09 REMARK 500 O HOH B 927 O HOH B 952 2.09 REMARK 500 O HOH A 904 O HOH A 908 2.09 REMARK 500 O HOH A 904 O HOH A 923 2.10 REMARK 500 O HOH B 863 O HOH B 917 2.12 REMARK 500 O HOH B 886 O HOH B 947 2.12 REMARK 500 O HOH A 636 O HOH A 929 2.13 REMARK 500 O HOH B 950 O HOH B 986 2.15 REMARK 500 O HOH B 977 O HOH B 1023 2.17 REMARK 500 O HOH B 835 O HOH B 945 2.17 REMARK 500 O HOH B 994 O HOH B 1000 2.18 REMARK 500 O HOH B 752 O HOH B 952 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1033 O HOH B 986 4445 2.12 REMARK 500 O HOH A 1042 O HOH B 1028 2555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 67 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 252 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 59 -124.84 52.88 REMARK 500 TRP A 127 1.26 89.96 REMARK 500 ASP A 128 56.37 -105.33 REMARK 500 THR A 168 -77.38 -87.20 REMARK 500 GLN A 171 71.96 61.66 REMARK 500 SER A 234 -176.93 -174.21 REMARK 500 TYR A 298 -33.17 -132.87 REMARK 500 ALA A 306 84.24 -153.75 REMARK 500 TYR A 332 80.23 -152.78 REMARK 500 TRP A 413 -129.28 46.98 REMARK 500 TRP A 413 -129.79 46.98 REMARK 500 ASP B 52 14.64 59.81 REMARK 500 ALA B 59 -129.54 55.74 REMARK 500 TRP B 127 4.23 87.73 REMARK 500 ASP B 128 59.01 -107.73 REMARK 500 THR B 168 -74.57 -86.60 REMARK 500 GLN B 171 68.16 60.97 REMARK 500 SER B 234 -177.27 -173.18 REMARK 500 TYR B 298 -36.64 -137.05 REMARK 500 TYR B 332 82.35 -151.04 REMARK 500 TRP B 413 -130.30 44.16 REMARK 500 TRP B 413 -129.28 44.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1059 DISTANCE = 6.18 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GNY RELATED DB: PDB REMARK 900 RELATED ID: 5GNZ RELATED DB: PDB DBREF 5GNX A -2 464 PDB 5GNX 5GNX -2 464 DBREF 5GNX B -2 464 PDB 5GNX 5GNX -2 464 SEQRES 1 A 467 MET GLY SER MET THR SER ASP THR ALA ARG SER TYR ARG SEQRES 2 A 467 PHE PRO GLU GLY PHE LEU TRP GLY ALA ALA THR ALA ALA SEQRES 3 A 467 TYR GLN ILE GLU GLY SER SER MET ALA ASP GLY ALA GLY SEQRES 4 A 467 GLU SER ILE TRP ASP ARG PHE SER HIS THR PRO GLY ASN SEQRES 5 A 467 MET LYS ASP GLY ASP THR GLY ASP VAL ALA CYS ASP HIS SEQRES 6 A 467 TYR ASN ARG TRP ARG GLU ASP ILE GLU LEU MET LYS ARG SEQRES 7 A 467 LEU ASN LEU GLN ALA TYR ARG PHE SER VAL SER TRP SER SEQRES 8 A 467 ARG VAL ILE PRO GLN GLY ARG GLY ALA ILE ASN PRO LYS SEQRES 9 A 467 GLY LEU ALA PHE TYR ASP ARG LEU VAL ASP GLY LEU LEU SEQRES 10 A 467 GLU ALA GLY ILE GLU PRO LEU ALA THR LEU TYR HIS TRP SEQRES 11 A 467 ASP LEU PRO ALA ALA LEU ASP ASP ARG GLY GLY TRP LEU SEQRES 12 A 467 ASN PRO ASP ILE ALA ASP TRP PHE ALA ASP TYR GLY GLN SEQRES 13 A 467 VAL LEU PHE GLU LYS PHE LYS GLY ARG VAL LYS THR TRP SEQRES 14 A 467 GLY THR ILE ASN GLN PRO TRP VAL ILE VAL ASP GLY GLY SEQRES 15 A 467 TYR LEU HIS GLY ALA LEU ALA PRO GLY HIS ARG SER ALA SEQRES 16 A 467 TYR GLU ALA VAL ILE ALA GLY HIS ASN VAL LEU ARG ALA SEQRES 17 A 467 HIS GLY ALA ALA VAL ARG ARG PHE ARG GLU VAL GLY GLU SEQRES 18 A 467 GLY GLN ILE GLY ILE VAL LEU ASN ILE GLU PRO LYS TYR SEQRES 19 A 467 PRO ALA SER ASP LYS PRO GLU ASP GLU ALA ALA ARG ARG SEQRES 20 A 467 ARG ALA GLU ALA GLN MET ASN ARG TRP PHE LEU ASP PRO SEQRES 21 A 467 LEU MET GLY ARG GLY TYR PRO GLU GLU LEU THR ASP VAL SEQRES 22 A 467 TYR GLY ALA ALA TRP ARG GLU PHE PRO LYS GLU ASP PHE SEQRES 23 A 467 GLU LEU ILE ALA GLU PRO THR ASP TRP MET GLY LEU ASN SEQRES 24 A 467 TRP TYR THR ARG ALA VAL PRO GLU ASN ALA PRO ASP ALA SEQRES 25 A 467 TRP PRO THR ARG SER ARG PRO VAL ARG GLN THR GLN HIS SEQRES 26 A 467 ALA HIS THR GLU THR GLY TRP GLU VAL TYR PRO PRO ALA SEQRES 27 A 467 LEU THR ASP THR LEU VAL TRP LEU SER GLU GLN THR GLY SEQRES 28 A 467 GLY LYS LEU PRO LEU MET VAL THR GLU ASN GLY SER ALA SEQRES 29 A 467 TRP TYR ASP PRO PRO HIS ALA ILE ASP GLY ARG ILE HIS SEQRES 30 A 467 ASP PRO MET ARG VAL HIS TYR LEU GLN THR HIS ILE LYS SEQRES 31 A 467 ALA LEU HIS ASP ALA ILE GLY LYS GLY VAL ASP LEU ARG SEQRES 32 A 467 GLY TYR MET ALA TRP SER LEU LEU ASP ASN LEU GLU TRP SEQRES 33 A 467 SER LEU GLY TYR SER LYS ARG PHE GLY ILE VAL HIS VAL SEQRES 34 A 467 ASN PHE ALA THR GLN GLU ARG THR ILE LYS ASP SER GLY SEQRES 35 A 467 LEU LEU TYR ALA GLU VAL ILE LYS THR HIS GLY ASP VAL SEQRES 36 A 467 LEU ASN THR LEU LYS LEU HIS HIS HIS HIS HIS HIS SEQRES 1 B 467 MET GLY SER MET THR SER ASP THR ALA ARG SER TYR ARG SEQRES 2 B 467 PHE PRO GLU GLY PHE LEU TRP GLY ALA ALA THR ALA ALA SEQRES 3 B 467 TYR GLN ILE GLU GLY SER SER MET ALA ASP GLY ALA GLY SEQRES 4 B 467 GLU SER ILE TRP ASP ARG PHE SER HIS THR PRO GLY ASN SEQRES 5 B 467 MET LYS ASP GLY ASP THR GLY ASP VAL ALA CYS ASP HIS SEQRES 6 B 467 TYR ASN ARG TRP ARG GLU ASP ILE GLU LEU MET LYS ARG SEQRES 7 B 467 LEU ASN LEU GLN ALA TYR ARG PHE SER VAL SER TRP SER SEQRES 8 B 467 ARG VAL ILE PRO GLN GLY ARG GLY ALA ILE ASN PRO LYS SEQRES 9 B 467 GLY LEU ALA PHE TYR ASP ARG LEU VAL ASP GLY LEU LEU SEQRES 10 B 467 GLU ALA GLY ILE GLU PRO LEU ALA THR LEU TYR HIS TRP SEQRES 11 B 467 ASP LEU PRO ALA ALA LEU ASP ASP ARG GLY GLY TRP LEU SEQRES 12 B 467 ASN PRO ASP ILE ALA ASP TRP PHE ALA ASP TYR GLY GLN SEQRES 13 B 467 VAL LEU PHE GLU LYS PHE LYS GLY ARG VAL LYS THR TRP SEQRES 14 B 467 GLY THR ILE ASN GLN PRO TRP VAL ILE VAL ASP GLY GLY SEQRES 15 B 467 TYR LEU HIS GLY ALA LEU ALA PRO GLY HIS ARG SER ALA SEQRES 16 B 467 TYR GLU ALA VAL ILE ALA GLY HIS ASN VAL LEU ARG ALA SEQRES 17 B 467 HIS GLY ALA ALA VAL ARG ARG PHE ARG GLU VAL GLY GLU SEQRES 18 B 467 GLY GLN ILE GLY ILE VAL LEU ASN ILE GLU PRO LYS TYR SEQRES 19 B 467 PRO ALA SER ASP LYS PRO GLU ASP GLU ALA ALA ARG ARG SEQRES 20 B 467 ARG ALA GLU ALA GLN MET ASN ARG TRP PHE LEU ASP PRO SEQRES 21 B 467 LEU MET GLY ARG GLY TYR PRO GLU GLU LEU THR ASP VAL SEQRES 22 B 467 TYR GLY ALA ALA TRP ARG GLU PHE PRO LYS GLU ASP PHE SEQRES 23 B 467 GLU LEU ILE ALA GLU PRO THR ASP TRP MET GLY LEU ASN SEQRES 24 B 467 TRP TYR THR ARG ALA VAL PRO GLU ASN ALA PRO ASP ALA SEQRES 25 B 467 TRP PRO THR ARG SER ARG PRO VAL ARG GLN THR GLN HIS SEQRES 26 B 467 ALA HIS THR GLU THR GLY TRP GLU VAL TYR PRO PRO ALA SEQRES 27 B 467 LEU THR ASP THR LEU VAL TRP LEU SER GLU GLN THR GLY SEQRES 28 B 467 GLY LYS LEU PRO LEU MET VAL THR GLU ASN GLY SER ALA SEQRES 29 B 467 TRP TYR ASP PRO PRO HIS ALA ILE ASP GLY ARG ILE HIS SEQRES 30 B 467 ASP PRO MET ARG VAL HIS TYR LEU GLN THR HIS ILE LYS SEQRES 31 B 467 ALA LEU HIS ASP ALA ILE GLY LYS GLY VAL ASP LEU ARG SEQRES 32 B 467 GLY TYR MET ALA TRP SER LEU LEU ASP ASN LEU GLU TRP SEQRES 33 B 467 SER LEU GLY TYR SER LYS ARG PHE GLY ILE VAL HIS VAL SEQRES 34 B 467 ASN PHE ALA THR GLN GLU ARG THR ILE LYS ASP SER GLY SEQRES 35 B 467 LEU LEU TYR ALA GLU VAL ILE LYS THR HIS GLY ASP VAL SEQRES 36 B 467 LEU ASN THR LEU LYS LEU HIS HIS HIS HIS HIS HIS HET PPI A 501 5 HET BGC A 502 12 HET GOL B 501 6 HET PPI B 502 5 HET BGC B 503 12 HETNAM PPI PROPANOIC ACID HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PPI 2(C3 H6 O2) FORMUL 4 BGC 2(C6 H12 O6) FORMUL 5 GOL C3 H8 O3 FORMUL 8 HOH *903(H2 O) HELIX 1 AA1 ALA A 22 GLU A 27 1 6 HELIX 2 AA2 MET A 31 ALA A 35 5 5 HELIX 3 AA3 SER A 38 HIS A 45 1 8 HELIX 4 AA4 MET A 50 ASP A 54 5 5 HELIX 5 AA5 ASP A 61 LEU A 76 1 16 HELIX 6 AA6 SER A 86 ILE A 91 1 6 HELIX 7 AA7 ASN A 99 ALA A 116 1 18 HELIX 8 AA8 PRO A 130 ASP A 135 1 6 HELIX 9 AA9 ARG A 136 PRO A 142 5 7 HELIX 10 AB1 ASP A 143 PHE A 159 1 17 HELIX 11 AB2 GLN A 171 TYR A 180 1 10 HELIX 12 AB3 SER A 191 GLY A 217 1 27 HELIX 13 AB4 LYS A 236 ARG A 252 1 17 HELIX 14 AB5 PHE A 254 MET A 259 1 6 HELIX 15 AB6 GLU A 265 GLY A 272 1 8 HELIX 16 AB7 ALA A 273 TRP A 275 5 3 HELIX 17 AB8 PRO A 279 ALA A 287 1 9 HELIX 18 AB9 PRO A 333 THR A 347 1 15 HELIX 19 AC1 ASP A 375 LYS A 395 1 21 HELIX 20 AC2 GLU A 412 LYS A 419 5 8 HELIX 21 AC3 LYS A 436 THR A 448 1 13 HELIX 22 AC4 GLY A 450 THR A 455 5 6 HELIX 23 AC5 ALA B 22 GLU B 27 1 6 HELIX 24 AC6 MET B 31 ALA B 35 5 5 HELIX 25 AC7 SER B 38 HIS B 45 1 8 HELIX 26 AC8 MET B 50 ASP B 54 5 5 HELIX 27 AC9 ASP B 61 LEU B 76 1 16 HELIX 28 AD1 SER B 86 ILE B 91 1 6 HELIX 29 AD2 ASN B 99 ALA B 116 1 18 HELIX 30 AD3 PRO B 130 ASP B 135 1 6 HELIX 31 AD4 ARG B 136 PRO B 142 5 7 HELIX 32 AD5 ASP B 143 PHE B 159 1 17 HELIX 33 AD6 GLN B 171 TYR B 180 1 10 HELIX 34 AD7 SER B 191 GLY B 217 1 27 HELIX 35 AD8 LYS B 236 ARG B 252 1 17 HELIX 36 AD9 PHE B 254 MET B 259 1 6 HELIX 37 AE1 GLU B 265 GLY B 272 1 8 HELIX 38 AE2 ALA B 273 TRP B 275 5 3 HELIX 39 AE3 PRO B 279 ALA B 287 1 9 HELIX 40 AE4 PRO B 333 GLY B 348 1 16 HELIX 41 AE5 ASP B 375 LYS B 395 1 21 HELIX 42 AE6 GLU B 412 LYS B 419 5 8 HELIX 43 AE7 LYS B 436 THR B 448 1 13 HELIX 44 AE8 GLY B 450 ASN B 454 5 5 SHEET 1 AA1 9 LEU A 16 ALA A 20 0 SHEET 2 AA1 9 ALA A 80 SER A 84 1 O ARG A 82 N ALA A 19 SHEET 3 AA1 9 GLU A 119 TYR A 125 1 O LEU A 121 N TYR A 81 SHEET 4 AA1 9 THR A 165 ASN A 170 1 O GLY A 167 N LEU A 124 SHEET 5 AA1 9 GLN A 220 ASN A 226 1 O GLN A 220 N TRP A 166 SHEET 6 AA1 9 MET A 293 ASN A 296 1 O GLY A 294 N ILE A 223 SHEET 7 AA1 9 LEU A 353 ASN A 358 1 O MET A 354 N LEU A 295 SHEET 8 AA1 9 LEU A 399 TRP A 405 1 O ARG A 400 N LEU A 353 SHEET 9 AA1 9 LEU A 16 ALA A 20 1 N ALA A 20 O ALA A 404 SHEET 1 AA2 2 PRO A 303 ASN A 305 0 SHEET 2 AA2 2 SER A 314 PRO A 316 -1 O ARG A 315 N GLU A 304 SHEET 1 AA3 2 VAL A 424 VAL A 426 0 SHEET 2 AA3 2 ARG A 433 ILE A 435 -1 O THR A 434 N HIS A 425 SHEET 1 AA4 9 LEU B 16 ALA B 20 0 SHEET 2 AA4 9 ALA B 80 SER B 84 1 O ARG B 82 N ALA B 19 SHEET 3 AA4 9 GLU B 119 TYR B 125 1 O GLU B 119 N TYR B 81 SHEET 4 AA4 9 THR B 165 ASN B 170 1 O GLY B 167 N LEU B 124 SHEET 5 AA4 9 GLN B 220 ASN B 226 1 O GLN B 220 N TRP B 166 SHEET 6 AA4 9 MET B 293 ASN B 296 1 O GLY B 294 N LEU B 225 SHEET 7 AA4 9 LEU B 353 ASN B 358 1 O MET B 354 N LEU B 295 SHEET 8 AA4 9 LEU B 399 TRP B 405 1 O ARG B 400 N LEU B 353 SHEET 9 AA4 9 LEU B 16 ALA B 20 1 N ALA B 20 O ALA B 404 SHEET 1 AA5 2 PRO B 303 ASN B 305 0 SHEET 2 AA5 2 SER B 314 PRO B 316 -1 O ARG B 315 N GLU B 304 SHEET 1 AA6 2 VAL B 424 VAL B 426 0 SHEET 2 AA6 2 ARG B 433 ILE B 435 -1 O THR B 434 N HIS B 425 CISPEP 1 ALA A 186 PRO A 187 0 8.38 CISPEP 2 TRP A 310 PRO A 311 0 -3.11 CISPEP 3 TRP A 405 SER A 406 0 3.58 CISPEP 4 ALA B 186 PRO B 187 0 5.51 CISPEP 5 TRP B 310 PRO B 311 0 -3.70 CISPEP 6 TRP B 405 SER B 406 0 5.60 CRYST1 125.247 95.697 94.976 90.00 125.61 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007984 0.000000 0.005719 0.00000 SCALE2 0.000000 0.010450 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012952 0.00000