HEADER HYDROLASE 26-JUL-16 5GOF TITLE TRUNCATED MITOFUSIN-1, GTP-BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOFUSIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-369,UNP RESIDUES 696-741; COMPND 5 SYNONYM: FZO HOMOLOG,TRANSMEMBRANE GTPASE MFN1,FZO HOMOLOG, COMPND 6 TRANSMEMBRANE GTPASE MFN1; COMPND 7 EC: 3.6.5.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MFN1; SOURCE 6 EXPRESSION_SYSTEM: ESCHARINIDAE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 560995 KEYWDS HYDROLASE, MITOCHONDRIAL FUSION EXPDTA X-RAY DIFFRACTION AUTHOR Y.L.CAO,S.GAO REVDAT 4 20-MAR-24 5GOF 1 LINK REVDAT 3 08-MAR-17 5GOF 1 JRNL REVDAT 2 01-FEB-17 5GOF 1 TITLE REVDAT 1 25-JAN-17 5GOF 0 JRNL AUTH Y.L.CAO,S.MENG,Y.CHEN,J.X.FENG,D.D.GU,B.YU,Y.J.LI,J.Y.YANG, JRNL AUTH 2 S.LIAO,D.C.CHAN,S.GAO JRNL TITL MFN1 STRUCTURES REVEAL NUCLEOTIDE-TRIGGERED DIMERIZATION JRNL TITL 2 CRITICAL FOR MITOCHONDRIAL FUSION JRNL REF NATURE V. 542 372 2017 JRNL REFN ESSN 1476-4687 JRNL PMID 28114303 JRNL DOI 10.1038/NATURE21077 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 3 NUMBER OF REFLECTIONS : 57847 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.1097 - 4.4197 0.82 2584 135 0.1759 0.1801 REMARK 3 2 4.4197 - 3.5100 0.88 2632 140 0.1407 0.1765 REMARK 3 3 3.5100 - 3.0669 1.00 2956 164 0.1568 0.2089 REMARK 3 4 3.0669 - 2.7867 1.00 2975 141 0.1747 0.2201 REMARK 3 5 2.7867 - 2.5871 1.00 2922 181 0.1789 0.1984 REMARK 3 6 2.5871 - 2.4347 1.00 2917 155 0.1777 0.2167 REMARK 3 7 2.4347 - 2.3128 0.99 2919 146 0.1787 0.2122 REMARK 3 8 2.3128 - 2.2121 0.33 940 58 0.1940 0.2586 REMARK 3 9 2.2121 - 2.1270 0.98 2883 135 0.1921 0.2006 REMARK 3 10 2.1270 - 2.0536 1.00 2918 154 0.1859 0.2185 REMARK 3 11 2.0536 - 1.9894 1.00 2905 137 0.1962 0.2639 REMARK 3 12 1.9894 - 1.9326 0.95 285 13 0.1867 0.2441 REMARK 3 13 1.9326 - 1.8817 0.99 2124 127 0.2919 0.3441 REMARK 3 14 1.8817 - 1.8358 0.97 2796 154 0.2602 0.2863 REMARK 3 15 1.8358 - 1.7941 1.00 2882 160 0.2103 0.2547 REMARK 3 16 1.7941 - 1.7559 1.00 2892 155 0.2030 0.2372 REMARK 3 17 1.7559 - 1.7208 1.00 2885 127 0.2142 0.2532 REMARK 3 18 1.7208 - 1.6883 1.00 2902 153 0.2202 0.2913 REMARK 3 19 1.6883 - 1.6582 1.00 2894 152 0.2174 0.2723 REMARK 3 20 1.6582 - 1.6301 1.00 2892 158 0.2370 0.2666 REMARK 3 21 1.6301 - 1.6038 0.99 2836 163 0.2346 0.2724 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3329 REMARK 3 ANGLE : 0.812 4510 REMARK 3 CHIRALITY : 0.050 503 REMARK 3 PLANARITY : 0.004 579 REMARK 3 DIHEDRAL : 21.318 2066 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6305 16.9381 1.0851 REMARK 3 T TENSOR REMARK 3 T11: 0.1365 T22: 0.1536 REMARK 3 T33: 0.1771 T12: 0.0061 REMARK 3 T13: -0.0047 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.4337 L22: 2.2702 REMARK 3 L33: 4.9494 L12: -0.2267 REMARK 3 L13: 0.3842 L23: -3.3070 REMARK 3 S TENSOR REMARK 3 S11: 0.0081 S12: 0.0145 S13: 0.0242 REMARK 3 S21: -0.0082 S22: 0.1611 S23: 0.1721 REMARK 3 S31: -0.0396 S32: -0.2641 S33: -0.1704 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7036 -4.2188 20.2091 REMARK 3 T TENSOR REMARK 3 T11: 0.2886 T22: 0.3071 REMARK 3 T33: 0.4856 T12: 0.0309 REMARK 3 T13: -0.0588 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 5.7401 L22: 3.4566 REMARK 3 L33: 7.9324 L12: 0.8431 REMARK 3 L13: 0.7096 L23: 2.5505 REMARK 3 S TENSOR REMARK 3 S11: 0.1679 S12: 0.3233 S13: -0.7063 REMARK 3 S21: 0.2615 S22: -0.1022 S23: 0.5414 REMARK 3 S31: 0.9931 S32: -0.3623 S33: -0.0830 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 157 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0052 -3.1336 24.7106 REMARK 3 T TENSOR REMARK 3 T11: 0.1469 T22: 0.1448 REMARK 3 T33: 0.1534 T12: -0.0155 REMARK 3 T13: 0.0147 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.6209 L22: 2.3537 REMARK 3 L33: 1.8966 L12: -0.5810 REMARK 3 L13: 0.6047 L23: -0.8575 REMARK 3 S TENSOR REMARK 3 S11: 0.0489 S12: 0.1252 S13: -0.0491 REMARK 3 S21: -0.0879 S22: -0.0625 S23: 0.0141 REMARK 3 S31: 0.0509 S32: 0.0773 S33: 0.0150 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 285 THROUGH 736 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3960 22.2164 5.2163 REMARK 3 T TENSOR REMARK 3 T11: 0.1490 T22: 0.1199 REMARK 3 T33: 0.2044 T12: -0.0130 REMARK 3 T13: -0.0159 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 0.4899 L22: 2.4037 REMARK 3 L33: 7.2416 L12: -0.1371 REMARK 3 L13: 0.1676 L23: -3.7130 REMARK 3 S TENSOR REMARK 3 S11: -0.0347 S12: 0.0493 S13: 0.1133 REMARK 3 S21: 0.2502 S22: -0.0026 S23: 0.0093 REMARK 3 S31: -0.4834 S32: 0.0827 S33: 0.0415 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5GOF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1300001178. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 426491 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 44.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1MM ZNCL2, 100MM TRIS-HCL (PH REMARK 280 8.0~9.0), 15~16% PEG 3350, 10~15% GLYCEROL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.28950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.67200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.23050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.67200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.28950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.23050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 PRO A -5 REMARK 465 HIS A -4 REMARK 465 MET A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 MET A 148 REMARK 465 ASP A 149 REMARK 465 LYS A 150 REMARK 465 ASP A 151 REMARK 465 LEU A 152 REMARK 465 LYS A 153 REMARK 465 VAL A 184 REMARK 465 THR A 185 REMARK 465 THR A 186 REMARK 465 ALA A 296 REMARK 465 GLN A 297 REMARK 465 GLY A 298 REMARK 465 MET A 299 REMARK 465 PRO A 300 REMARK 465 GLU A 301 REMARK 465 SER A 302 REMARK 465 GLY A 303 REMARK 465 SER A 737 REMARK 465 ASN A 738 REMARK 465 GLU A 739 REMARK 465 GLU A 740 REMARK 465 SER A 741 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 109 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1092 O HOH A 1226 2.18 REMARK 500 O HOH A 1094 O HOH A 1216 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 173 33.40 71.69 REMARK 500 LEU A 188 -44.89 51.37 REMARK 500 SER A 210 -154.27 -115.88 REMARK 500 SER A 369 -4.66 -140.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1422 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1423 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A1424 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A1425 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH A1426 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH A1427 DISTANCE = 7.13 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 89 OG REMARK 620 2 GTP A 901 O1G 177.5 REMARK 620 3 GTP A 901 O1B 87.5 90.7 REMARK 620 4 HOH A1102 O 86.4 91.8 86.1 REMARK 620 5 HOH A1106 O 91.3 90.6 95.2 177.3 REMARK 620 6 HOH A1224 O 90.0 91.6 173.9 88.1 90.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 903 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 111 SG REMARK 620 2 HIS A 144 ND1 93.9 REMARK 620 3 HIS A 147 NE2 128.5 90.8 REMARK 620 4 CYS A 156 SG 120.7 112.7 104.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 903 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GOE RELATED DB: PDB REMARK 900 RELATED ID: 5GOM RELATED DB: PDB DBREF 5GOF A 1 362 UNP Q8IWA4 MFN1_HUMAN 1 362 DBREF 5GOF A 696 741 UNP Q8IWA4 MFN1_HUMAN 696 741 SEQADV 5GOF GLY A -6 UNP Q8IWA4 EXPRESSION TAG SEQADV 5GOF PRO A -5 UNP Q8IWA4 EXPRESSION TAG SEQADV 5GOF HIS A -4 UNP Q8IWA4 EXPRESSION TAG SEQADV 5GOF MET A -3 UNP Q8IWA4 EXPRESSION TAG SEQADV 5GOF GLY A -2 UNP Q8IWA4 EXPRESSION TAG SEQADV 5GOF GLY A -1 UNP Q8IWA4 EXPRESSION TAG SEQADV 5GOF SER A 0 UNP Q8IWA4 EXPRESSION TAG SEQADV 5GOF GLU A 363 UNP Q8IWA4 LINKER SEQADV 5GOF ASP A 364 UNP Q8IWA4 LINKER SEQADV 5GOF LYS A 365 UNP Q8IWA4 LINKER SEQADV 5GOF ARG A 366 UNP Q8IWA4 LINKER SEQADV 5GOF HIS A 367 UNP Q8IWA4 LINKER SEQADV 5GOF TYR A 368 UNP Q8IWA4 LINKER SEQADV 5GOF SER A 369 UNP Q8IWA4 LINKER SEQRES 1 A 422 GLY PRO HIS MET GLY GLY SER MET ALA GLU PRO VAL SER SEQRES 2 A 422 PRO LEU LYS HIS PHE VAL LEU ALA LYS LYS ALA ILE THR SEQRES 3 A 422 ALA ILE PHE ASP GLN LEU LEU GLU PHE VAL THR GLU GLY SEQRES 4 A 422 SER HIS PHE VAL GLU ALA THR TYR LYS ASN PRO GLU LEU SEQRES 5 A 422 ASP ARG ILE ALA THR GLU ASP ASP LEU VAL GLU MET GLN SEQRES 6 A 422 GLY TYR LYS ASP LYS LEU SER ILE ILE GLY GLU VAL LEU SEQRES 7 A 422 SER ARG ARG HIS MET LYS VAL ALA PHE PHE GLY ARG THR SEQRES 8 A 422 SER SER GLY LYS SER SER VAL ILE ASN ALA MET LEU TRP SEQRES 9 A 422 ASP LYS VAL LEU PRO SER GLY ILE GLY HIS ILE THR ASN SEQRES 10 A 422 CYS PHE LEU SER VAL GLU GLY THR ASP GLY ASP LYS ALA SEQRES 11 A 422 TYR LEU MET THR GLU GLY SER ASP GLU LYS LYS SER VAL SEQRES 12 A 422 LYS THR VAL ASN GLN LEU ALA HIS ALA LEU HIS MET ASP SEQRES 13 A 422 LYS ASP LEU LYS ALA GLY CYS LEU VAL ARG VAL PHE TRP SEQRES 14 A 422 PRO LYS ALA LYS CYS ALA LEU LEU ARG ASP ASP LEU VAL SEQRES 15 A 422 LEU VAL ASP SER PRO GLY THR ASP VAL THR THR GLU LEU SEQRES 16 A 422 ASP SER TRP ILE ASP LYS PHE CYS LEU ASP ALA ASP VAL SEQRES 17 A 422 PHE VAL LEU VAL ALA ASN SER GLU SER THR LEU MET ASN SEQRES 18 A 422 THR GLU LYS HIS PHE PHE HIS LYS VAL ASN GLU ARG LEU SEQRES 19 A 422 SER LYS PRO ASN ILE PHE ILE LEU ASN ASN ARG TRP ASP SEQRES 20 A 422 ALA SER ALA SER GLU PRO GLU TYR MET GLU ASP VAL ARG SEQRES 21 A 422 ARG GLN HIS MET GLU ARG CYS LEU HIS PHE LEU VAL GLU SEQRES 22 A 422 GLU LEU LYS VAL VAL ASN ALA LEU GLU ALA GLN ASN ARG SEQRES 23 A 422 ILE PHE PHE VAL SER ALA LYS GLU VAL LEU SER ALA ARG SEQRES 24 A 422 LYS GLN LYS ALA GLN GLY MET PRO GLU SER GLY VAL ALA SEQRES 25 A 422 LEU ALA GLU GLY PHE HIS ALA ARG LEU GLN GLU PHE GLN SEQRES 26 A 422 ASN PHE GLU GLN ILE PHE GLU GLU CYS ILE SER GLN SER SEQRES 27 A 422 ALA VAL LYS THR LYS PHE GLU GLN HIS THR ILE ARG ALA SEQRES 28 A 422 LYS GLN ILE LEU ALA THR VAL LYS ASN ILE MET ASP SER SEQRES 29 A 422 VAL ASN LEU ALA ALA GLU ASP LYS ARG HIS TYR SER ALA SEQRES 30 A 422 ARG LEU PRO LYS GLU ILE ASP GLN LEU GLU LYS ILE GLN SEQRES 31 A 422 ASN ASN SER LYS LEU LEU ARG ASN LYS ALA VAL GLN LEU SEQRES 32 A 422 GLU ASN GLU LEU GLU ASN PHE THR LYS GLN PHE LEU PRO SEQRES 33 A 422 SER SER ASN GLU GLU SER HET GTP A 901 32 HET MG A 902 1 HET ZN A 903 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION FORMUL 2 GTP C10 H16 N5 O14 P3 FORMUL 3 MG MG 2+ FORMUL 4 ZN ZN 2+ FORMUL 5 HOH *427(H2 O) HELIX 1 AA1 LEU A 8 ASN A 42 1 35 HELIX 2 AA2 THR A 50 ARG A 73 1 24 HELIX 3 AA3 GLY A 87 TRP A 97 1 11 HELIX 4 AA4 SER A 135 LEU A 142 5 8 HELIX 5 AA5 CYS A 167 ASP A 172 1 6 HELIX 6 AA6 LEU A 188 CYS A 196 1 9 HELIX 7 AA7 MET A 213 LEU A 227 1 15 HELIX 8 AA8 ARG A 238 ALA A 243 5 6 HELIX 9 AA9 GLU A 245 GLU A 266 1 22 HELIX 10 AB1 ASN A 272 ASN A 278 1 7 HELIX 11 AB2 SER A 284 LYS A 293 1 10 HELIX 12 AB3 GLY A 309 SER A 369 1 61 HELIX 13 AB4 LEU A 698 LEU A 734 1 37 SHEET 1 AA1 8 TYR A 124 MET A 126 0 SHEET 2 AA1 8 LEU A 157 PRO A 163 -1 O PHE A 161 N TYR A 124 SHEET 3 AA1 8 PHE A 112 THR A 118 1 N SER A 114 O VAL A 160 SHEET 4 AA1 8 LEU A 174 ASP A 178 -1 O ASP A 178 N LEU A 113 SHEET 5 AA1 8 MET A 76 PHE A 81 1 N PHE A 80 O VAL A 177 SHEET 6 AA1 8 VAL A 201 ASN A 207 1 O VAL A 205 N PHE A 81 SHEET 7 AA1 8 ASN A 231 ASN A 237 1 O PHE A 233 N LEU A 204 SHEET 8 AA1 8 ILE A 280 PHE A 282 1 O PHE A 281 N ASN A 236 LINK OG SER A 89 MG MG A 902 1555 1555 2.18 LINK SG CYS A 111 ZN ZN A 903 1555 1555 2.27 LINK ND1 HIS A 144 ZN ZN A 903 1555 1555 2.02 LINK NE2 HIS A 147 ZN ZN A 903 1555 1555 2.69 LINK SG CYS A 156 ZN ZN A 903 1555 1555 2.26 LINK O1G GTP A 901 MG MG A 902 1555 1555 1.96 LINK O1B GTP A 901 MG MG A 902 1555 1555 2.09 LINK MG MG A 902 O HOH A1102 1555 1555 2.16 LINK MG MG A 902 O HOH A1106 1555 1555 1.93 LINK MG MG A 902 O HOH A1224 1555 1555 2.13 SITE 1 AC1 22 THR A 84 SER A 85 SER A 86 GLY A 87 SITE 2 AC1 22 LYS A 88 SER A 89 SER A 90 GLY A 106 SITE 3 AC1 22 ASN A 237 ARG A 238 ASP A 240 SER A 284 SITE 4 AC1 22 ALA A 285 LYS A 286 MG A 902 HOH A1001 SITE 5 AC1 22 HOH A1102 HOH A1106 HOH A1125 HOH A1148 SITE 6 AC1 22 HOH A1224 HOH A1277 SITE 1 AC2 5 SER A 89 GTP A 901 HOH A1102 HOH A1106 SITE 2 AC2 5 HOH A1224 SITE 1 AC3 4 CYS A 111 HIS A 144 HIS A 147 CYS A 156 CRYST1 70.579 72.461 95.344 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014169 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013801 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010488 0.00000