HEADER TRANSCRIPTION 29-JUL-16 5GOW TITLE SOLUTION STRUCTURE OF THE COMPLEX BETWEEN DP1 ACIDIC REGION AND TFIIH TITLE 2 P62 PH DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DP1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 1; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: UNP RESIDUES 1-108; COMPND 9 SYNONYM: BASIC TRANSCRIPTION FACTOR 2 62 KDA SUBUNIT,BTF2 P62,GENERAL COMPND 10 TRANSCRIPTION FACTOR IIH POLYPEPTIDE 1,TFIIH BASAL TRANSCRIPTION COMPND 11 FACTOR COMPLEX P62 SUBUNIT; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: GTF2H1, BTF2; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION FACTOR, GENERAL TRANSCRIPTION FACTOR, CELL CYCLE, KEYWDS 2 TRANSCRIPTION ACTIVATION, SOLUTION STRUCTURE, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.OKUDA,Y.NISHIMURA REVDAT 3 01-MAY-24 5GOW 1 COMPND REMARK REVDAT 2 14-DEC-16 5GOW 1 JRNL REVDAT 1 07-DEC-16 5GOW 0 JRNL AUTH M.OKUDA,K.ARAKI,K.OHTANI,Y.NISHIMURA JRNL TITL THE INTERACTION MODE OF THE ACIDIC REGION OF THE CELL CYCLE JRNL TITL 2 TRANSCRIPTION FACTOR DP1 WITH TFIIH JRNL REF J. MOL. BIOL. V. 428 4993 2016 JRNL REFN ESSN 1089-8638 JRNL PMID 27825926 JRNL DOI 10.1016/J.JMB.2016.11.001 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5GOW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1300001191. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 305 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.02 REMARK 210 PRESSURE : 760 TORR REMARK 210 SAMPLE CONTENTS : 0.35 MM [U-99% 13C; U-99% 15N] REMARK 210 DP1, 0.42 MM TFIIH P62, 90% H2O/ REMARK 210 10% D2O; 0.35 MM [U-99% 13C; U- REMARK 210 99% 15N] DP1, 0.42 MM TFIIH P62, REMARK 210 100% D2O; 0.35 MM [U-99% 13C; U- REMARK 210 99% 15N] TFIIH P62, 0.42 MM DP1, REMARK 210 90% H2O/10% D2O; 0.35 MM [U-99% REMARK 210 13C; U-99% 15N] TFIIH P62, 0.42 REMARK 210 MM DP1, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC AROMATIC; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HBHA(CO) REMARK 210 NH; 3D C(CO)NH; 3D H(CCO)NH; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 950 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRDRAW, NMRVIEW, X-PLOR NIH, REMARK 210 MOLMOL, PROCHECKNMR REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB2 LYS B 54 HG2 GLN B 66 1.27 REMARK 500 HD11 ILE B 31 HD12 LEU B 67 1.33 REMARK 500 HG3 GLU A 399 HE2 LYS B 62 1.34 REMARK 500 H1 TYR A 392 OD1 ASP A 396 1.52 REMARK 500 HZ1 LYS B 13 OE2 GLU B 88 1.55 REMARK 500 OE1 GLU A 398 HZ2 LYS B 62 1.55 REMARK 500 OD2 ASP A 396 HZ1 LYS B 19 1.56 REMARK 500 OD2 ASP A 409 HZ3 LYS B 51 1.56 REMARK 500 OXT ASP A 410 HZ2 LYS B 51 1.57 REMARK 500 HZ2 LYS B 14 OD1 ASP B 21 1.58 REMARK 500 H MET B 1 OE1 GLU B 29 1.59 REMARK 500 O LEU B 65 H PHE B 77 1.59 REMARK 500 HG1 THR B 84 OE1 GLU B 88 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 398 -79.25 169.21 REMARK 500 1 ASP A 401 -49.49 -139.09 REMARK 500 1 ASN A 406 -22.22 -164.28 REMARK 500 1 GLU A 408 -174.40 75.82 REMARK 500 1 ALA B 2 61.86 -160.63 REMARK 500 1 THR B 3 -68.07 -156.64 REMARK 500 1 LYS B 14 75.96 18.15 REMARK 500 1 LYS B 18 50.88 71.22 REMARK 500 2 GLU A 395 157.42 75.40 REMARK 500 2 GLU A 398 -62.01 172.86 REMARK 500 2 ASP A 401 -45.34 -138.42 REMARK 500 2 GLU A 405 -76.32 -72.34 REMARK 500 2 GLU A 408 -139.21 51.45 REMARK 500 2 ASP A 409 -163.66 -109.38 REMARK 500 2 SER B 5 47.07 -152.02 REMARK 500 2 LYS B 14 74.36 17.94 REMARK 500 2 CYS B 52 -178.16 -178.38 REMARK 500 3 GLU A 398 -96.13 175.19 REMARK 500 3 ASP A 401 -46.99 -139.48 REMARK 500 3 ASN A 406 -27.42 85.64 REMARK 500 3 GLU A 408 -159.92 62.41 REMARK 500 3 ALA B 2 -146.28 -159.80 REMARK 500 3 GLU B 6 36.40 72.59 REMARK 500 3 LYS B 14 79.68 18.10 REMARK 500 3 LYS B 104 109.08 -59.43 REMARK 500 4 VAL A 393 142.20 -170.24 REMARK 500 4 GLU A 398 -69.54 169.77 REMARK 500 4 ASP A 401 -48.62 -138.45 REMARK 500 4 ASP A 402 6.89 -67.98 REMARK 500 4 GLU A 408 98.60 -50.61 REMARK 500 4 SER B 5 74.77 61.32 REMARK 500 4 LYS B 14 70.10 18.44 REMARK 500 5 ASP A 397 16.88 -64.30 REMARK 500 5 GLU A 398 -77.65 96.16 REMARK 500 5 ASP A 400 77.12 177.70 REMARK 500 5 ASP A 401 -54.20 -139.04 REMARK 500 5 ASP A 402 11.50 -69.90 REMARK 500 5 ASN A 406 -37.02 79.23 REMARK 500 5 GLU A 408 -103.04 51.84 REMARK 500 5 ALA B 2 127.75 -174.23 REMARK 500 5 SER B 4 -47.24 -158.38 REMARK 500 5 LYS B 14 72.78 18.17 REMARK 500 5 ARG B 105 46.59 -89.02 REMARK 500 6 GLU A 398 -84.33 165.25 REMARK 500 6 ASP A 401 -50.31 -138.75 REMARK 500 6 ASN A 406 45.63 175.58 REMARK 500 6 GLU A 408 -170.02 -178.35 REMARK 500 6 ASP A 409 57.98 -175.07 REMARK 500 6 THR B 3 -30.71 -130.27 REMARK 500 6 SER B 4 -153.36 -151.26 REMARK 500 REMARK 500 THIS ENTRY HAS 201 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36013 RELATED DB: BMRB DBREF 5GOW A 392 410 PDB 5GOW 5GOW 392 410 DBREF 5GOW B 1 108 UNP P32780 TF2H1_HUMAN 1 108 SEQADV 5GOW GLY B -1 UNP P32780 EXPRESSION TAG SEQADV 5GOW SER B 0 UNP P32780 EXPRESSION TAG SEQRES 1 A 19 TYR VAL GLY GLU ASP ASP GLU GLU ASP ASP ASP PHE ASN SEQRES 2 A 19 GLU ASN ASP GLU ASP ASP SEQRES 1 B 110 GLY SER MET ALA THR SER SER GLU GLU VAL LEU LEU ILE SEQRES 2 B 110 VAL LYS LYS VAL ARG GLN LYS LYS GLN ASP GLY ALA LEU SEQRES 3 B 110 TYR LEU MET ALA GLU ARG ILE ALA TRP ALA PRO GLU GLY SEQRES 4 B 110 LYS ASP ARG PHE THR ILE SER HIS MET TYR ALA ASP ILE SEQRES 5 B 110 LYS CYS GLN LYS ILE SER PRO GLU GLY LYS ALA LYS ILE SEQRES 6 B 110 GLN LEU GLN LEU VAL LEU HIS ALA GLY ASP THR THR ASN SEQRES 7 B 110 PHE HIS PHE SER ASN GLU SER THR ALA VAL LYS GLU ARG SEQRES 8 B 110 ASP ALA VAL LYS ASP LEU LEU GLN GLN LEU LEU PRO LYS SEQRES 9 B 110 PHE LYS ARG LYS ALA ASN HELIX 1 1 TYR B 47 ASP B 49 5 3 HELIX 2 2 THR B 84 LYS B 104 1 21 SHEET 1 A 7 THR B 42 MET B 46 0 SHEET 2 A 7 ARG B 30 ALA B 34 -1 N ILE B 31 O HIS B 45 SHEET 3 A 7 ASP B 21 MET B 27 -1 N ALA B 23 O ALA B 34 SHEET 4 A 7 LEU B 9 ARG B 16 -1 N VAL B 12 O LEU B 24 SHEET 5 A 7 ASP B 73 PHE B 79 -1 O HIS B 78 N ARG B 16 SHEET 6 A 7 ILE B 63 LEU B 69 -1 N LEU B 65 O PHE B 77 SHEET 7 A 7 ILE B 50 SER B 56 -1 N CYS B 52 O VAL B 68 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1