HEADER TRANSCRIPTION, DNA BINDING PROTEIN 01-AUG-16 5GP9 TITLE STRUCTURAL ANALYSIS OF FATTY ACID DEGRADATION REGULATOR FADR FROM TITLE 2 BACILLUS HALODURANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR (TETR/ACRR FAMILY); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS HALODURANS (STRAIN ATCC BAA-125 / DSM SOURCE 3 18197 / FERM 7344 / JCM 9153 / C-125); SOURCE 4 ORGANISM_TAXID: 272558; SOURCE 5 STRAIN: ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125; SOURCE 6 GENE: BH3102; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FADR, TRANSCRIPTIONAL REGULATOR, TRANSCRIPTION, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.Y.LEE,H.K.YEO,Y.W.PARK REVDAT 3 08-NOV-23 5GP9 1 LINK REVDAT 2 06-DEC-17 5GP9 1 JRNL REVDAT 1 01-MAR-17 5GP9 0 JRNL AUTH H.K.YEO,Y.W.PARK,J.Y.LEE JRNL TITL STRUCTURAL BASIS OF OPERATOR SITES RECOGNITION AND EFFECTOR JRNL TITL 2 BINDING IN THE TETR FAMILY TRANSCRIPTION REGULATOR FADR. JRNL REF NUCLEIC ACIDS RES. V. 45 4244 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 28160603 JRNL DOI 10.1093/NAR/GKX009 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 38563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1915 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.6925 - 4.2262 0.95 2740 142 0.1888 0.2016 REMARK 3 2 4.2262 - 3.3563 1.00 2659 162 0.1799 0.2210 REMARK 3 3 3.3563 - 2.9326 1.00 2691 126 0.2090 0.2209 REMARK 3 4 2.9326 - 2.6647 1.00 2639 136 0.2037 0.2644 REMARK 3 5 2.6647 - 2.4738 1.00 2596 145 0.2011 0.2806 REMARK 3 6 2.4738 - 2.3281 1.00 2645 135 0.2037 0.2430 REMARK 3 7 2.3281 - 2.2115 1.00 2616 123 0.2082 0.2238 REMARK 3 8 2.2115 - 2.1153 1.00 2567 141 0.2111 0.2443 REMARK 3 9 2.1153 - 2.0339 1.00 2588 138 0.2141 0.2434 REMARK 3 10 2.0339 - 1.9637 1.00 2574 141 0.2197 0.2900 REMARK 3 11 1.9637 - 1.9023 1.00 2624 101 0.2375 0.2743 REMARK 3 12 1.9023 - 1.8480 1.00 2590 136 0.2457 0.2843 REMARK 3 13 1.8480 - 1.7993 1.00 2566 171 0.2525 0.3244 REMARK 3 14 1.7993 - 1.7554 0.99 2553 118 0.2853 0.2795 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.021 3150 REMARK 3 ANGLE : 2.018 4221 REMARK 3 CHIRALITY : 0.128 479 REMARK 3 PLANARITY : 0.011 531 REMARK 3 DIHEDRAL : 16.108 1207 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5GP9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1300001227. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38629 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.55600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1VI0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL, MGCL2, PEG 3350, PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 133.92267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.96133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 66.96133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 133.92267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 403 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 424 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 GLY B 2 REMARK 465 LYS B 3 REMARK 465 LYS B 4 REMARK 465 LYS B 5 REMARK 465 GLY B 6 REMARK 465 PRO B 7 REMARK 465 ARG B 195 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 8 CG CD CE NZ REMARK 470 ARG B 193 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 311 O HOH B 383 2.05 REMARK 500 O GLU B 147 O HOH B 301 2.16 REMARK 500 O2 PLM B 202 O HOH B 302 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 442 O HOH A 442 6764 1.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 82 CD GLU B 82 OE1 0.071 REMARK 500 ARG B 151 CZ ARG B 151 NH2 0.087 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 58 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG A 110 NE - CZ - NH2 ANGL. DEV. = 4.4 DEGREES REMARK 500 MET A 156 CG - SD - CE ANGL. DEV. = -10.2 DEGREES REMARK 500 ASP A 162 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP B 132 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP B 132 CB - CG - OD2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ARG B 151 NE - CZ - NH1 ANGL. DEV. = -9.0 DEGREES REMARK 500 ARG B 151 NE - CZ - NH2 ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 78 -60.42 -108.18 REMARK 500 ASP A 98 86.69 -151.85 REMARK 500 ASN A 113 106.14 -55.55 REMARK 500 ASN B 50 -173.65 -178.89 REMARK 500 ASP B 98 86.19 -152.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 428 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B 429 DISTANCE = 6.11 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 325 O REMARK 620 2 HOH A 361 O 91.1 REMARK 620 3 HOH A 382 O 94.0 88.1 REMARK 620 4 HOH A 414 O 88.3 178.7 93.1 REMARK 620 5 HOH B 345 O 177.5 89.4 88.4 91.2 REMARK 620 6 HOH B 363 O 88.0 91.3 177.9 87.5 89.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GPA RELATED DB: PDB REMARK 900 RELATED ID: 5GPC RELATED DB: PDB DBREF 5GP9 A 2 195 UNP Q9K8A4 Q9K8A4_BACHD 2 195 DBREF 5GP9 B 2 195 UNP Q9K8A4 Q9K8A4_BACHD 2 195 SEQRES 1 A 194 GLY LYS LYS LYS GLY PRO LYS TYR ASP GLN ILE ILE ASP SEQRES 2 A 194 ALA ALA VAL GLN VAL ILE ALA GLU HIS GLY TYR HIS GLN SEQRES 3 A 194 ALA GLN VAL SER LYS ILE ALA LYS ALA ALA GLY VAL ALA SEQRES 4 A 194 ASP GLY THR ILE TYR LEU TYR PHE ASN ASN LYS GLU ASP SEQRES 5 A 194 VAL LEU ILE SER LEU PHE GLN GLU LYS MET GLY ARG PHE SEQRES 6 A 194 VAL ASP LYS ILE ARG SER GLN MET ASN GLU ALA THR ASP SEQRES 7 A 194 VAL GLU GLU LYS LEU LYS ILE LEU VAL ASN MET HIS PHE SEQRES 8 A 194 LYS GLN LEU ALA ALA ASP HIS LYS LEU ALA ILE VAL THR SEQRES 9 A 194 GLN LEU GLU LEU ARG GLN SER ASN THR GLU LEU ARG LEU SEQRES 10 A 194 LYS ILE ASN GLU VAL LEU LYS GLY TYR LEU ASN LEU LEU SEQRES 11 A 194 ASP GLU LEU LEU MET GLU GLY LYS GLU LYS GLY TYR PHE SEQRES 12 A 194 PHE GLN GLU LEU ASP THR ARG LEU ALA ARG GLN MET ILE SEQRES 13 A 194 PHE GLY THR LEU ASP GLU VAL VAL THR ASN TRP VAL MET SEQRES 14 A 194 LYS ASP CYS LYS TYR ASP LEU THR ALA LEU VAL LYS PRO SEQRES 15 A 194 VAL HIS GLN LEU LEU LEU GLY GLY LEU ARG HIS ARG SEQRES 1 B 194 GLY LYS LYS LYS GLY PRO LYS TYR ASP GLN ILE ILE ASP SEQRES 2 B 194 ALA ALA VAL GLN VAL ILE ALA GLU HIS GLY TYR HIS GLN SEQRES 3 B 194 ALA GLN VAL SER LYS ILE ALA LYS ALA ALA GLY VAL ALA SEQRES 4 B 194 ASP GLY THR ILE TYR LEU TYR PHE ASN ASN LYS GLU ASP SEQRES 5 B 194 VAL LEU ILE SER LEU PHE GLN GLU LYS MET GLY ARG PHE SEQRES 6 B 194 VAL ASP LYS ILE ARG SER GLN MET ASN GLU ALA THR ASP SEQRES 7 B 194 VAL GLU GLU LYS LEU LYS ILE LEU VAL ASN MET HIS PHE SEQRES 8 B 194 LYS GLN LEU ALA ALA ASP HIS LYS LEU ALA ILE VAL THR SEQRES 9 B 194 GLN LEU GLU LEU ARG GLN SER ASN THR GLU LEU ARG LEU SEQRES 10 B 194 LYS ILE ASN GLU VAL LEU LYS GLY TYR LEU ASN LEU LEU SEQRES 11 B 194 ASP GLU LEU LEU MET GLU GLY LYS GLU LYS GLY TYR PHE SEQRES 12 B 194 PHE GLN GLU LEU ASP THR ARG LEU ALA ARG GLN MET ILE SEQRES 13 B 194 PHE GLY THR LEU ASP GLU VAL VAL THR ASN TRP VAL MET SEQRES 14 B 194 LYS ASP CYS LYS TYR ASP LEU THR ALA LEU VAL LYS PRO SEQRES 15 B 194 VAL HIS GLN LEU LEU LEU GLY GLY LEU ARG HIS ARG HET MG A 201 1 HET GOL A 202 6 HET PLM A 203 18 HET GOL B 201 6 HET PLM B 202 18 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM PLM PALMITIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG MG 2+ FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 PLM 2(C16 H32 O2) FORMUL 8 HOH *271(H2 O) HELIX 1 AA1 LYS A 8 ALA A 28 1 21 HELIX 2 AA2 GLN A 29 GLY A 38 1 10 HELIX 3 AA3 ALA A 40 PHE A 48 1 9 HELIX 4 AA4 ASN A 50 GLU A 76 1 27 HELIX 5 AA5 ASP A 79 ALA A 97 1 19 HELIX 6 AA6 ASP A 98 LEU A 107 1 10 HELIX 7 AA7 ASN A 113 LYS A 141 1 29 HELIX 8 AA8 ASP A 149 LYS A 171 1 23 HELIX 9 AA9 ASP A 176 ALA A 179 5 4 HELIX 10 AB1 LEU A 180 GLY A 191 1 12 HELIX 11 AB2 TYR B 9 GLY B 24 1 16 HELIX 12 AB3 GLN B 29 GLY B 38 1 10 HELIX 13 AB4 ALA B 40 PHE B 48 1 9 HELIX 14 AB5 ASN B 50 ALA B 77 1 28 HELIX 15 AB6 ASP B 79 ALA B 97 1 19 HELIX 16 AB7 ASP B 98 LEU B 107 1 10 HELIX 17 AB8 ASN B 113 LYS B 141 1 29 HELIX 18 AB9 ASP B 149 LYS B 171 1 23 HELIX 19 AC1 ASP B 176 ALA B 179 5 4 HELIX 20 AC2 LEU B 180 GLY B 191 1 12 LINK MG MG A 201 O HOH A 325 1555 1555 2.00 LINK MG MG A 201 O HOH A 361 1555 1555 2.05 LINK MG MG A 201 O HOH A 382 1555 1555 2.04 LINK MG MG A 201 O HOH A 414 1555 1555 2.15 LINK MG MG A 201 O HOH B 345 1555 1555 1.94 LINK MG MG A 201 O HOH B 363 1555 1555 2.13 SITE 1 AC1 6 HOH A 325 HOH A 361 HOH A 382 HOH A 414 SITE 2 AC1 6 HOH B 345 HOH B 363 SITE 1 AC2 7 ARG A 71 MET A 74 ASN A 75 LYS A 83 SITE 2 AC2 7 GLU A 133 LEU A 134 GLU A 137 SITE 1 AC3 9 HIS A 91 ARG A 110 ILE A 120 PHE A 158 SITE 2 AC3 9 HOH A 325 HOH A 369 HOH A 425 GLU B 163 SITE 3 AC3 9 THR B 166 SITE 1 AC4 6 MET B 74 LYS B 83 GLU B 133 LEU B 134 SITE 2 AC4 6 GLU B 137 HOH B 327 SITE 1 AC5 9 LYS B 62 PHE B 66 HIS B 91 GLN B 94 SITE 2 AC5 9 LEU B 109 ARG B 110 ILE B 120 HOH B 302 SITE 3 AC5 9 HOH B 351 CRYST1 56.873 56.873 200.884 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017583 0.010152 0.000000 0.00000 SCALE2 0.000000 0.020303 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004978 0.00000