HEADER HYDROLASE 07-AUG-16 5GQF TITLE CRYSTAL STRUCTURE OF LACTO-N-BIOSIDASE LNBX FROM BIFIDOBACTERIUM TITLE 2 LONGUM SUBSP. LONGUM, LACTO-N-BIOSE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTO-N-BIOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 31-625; COMPND 5 EC: 3.2.1.140; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BIFIDOBACTERIUM LONGUM SUBSP. LONGUM; SOURCE 3 ORGANISM_TAXID: 1679; SOURCE 4 STRAIN: JCM1217; SOURCE 5 GENE: LNBX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: DELTA-LACZ (DE3)/PRARE2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PTK2385 KEYWDS HYDROLASE, BETA-HELIX EXPDTA X-RAY DIFFRACTION AUTHOR C.YAMADA,T.ARAKAWA,T.KATAYAMA,S.FUSHINOBU REVDAT 5 20-MAR-24 5GQF 1 HETSYN LINK REVDAT 4 29-JUL-20 5GQF 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 18-OCT-17 5GQF 1 TITLE REVDAT 2 03-MAY-17 5GQF 1 JRNL REVDAT 1 19-APR-17 5GQF 0 JRNL AUTH C.YAMADA,A.GOTOH,M.SAKANAKA,M.HATTIE,K.A.STUBBS, JRNL AUTH 2 A.KATAYAMA-IKEGAMI,J.HIROSE,S.KURIHARA,T.ARAKAWA,M.KITAOKA, JRNL AUTH 3 S.OKUDA,T.KATAYAMA,S.FUSHINOBU JRNL TITL MOLECULAR INSIGHT INTO EVOLUTION OF SYMBIOSIS BETWEEN JRNL TITL 2 BREAST-FED INFANTS AND A MEMBER OF THE HUMAN GUT MICROBIOME JRNL TITL 3 BIFIDOBACTERIUM LONGUM JRNL REF CELL CHEM BIOL V. 24 515 2017 JRNL REFN ESSN 2451-9456 JRNL PMID 28392148 JRNL DOI 10.1016/J.CHEMBIOL.2017.03.012 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.SAKURAMA,M.KIYOHARA,J.WADA,Y.HONDA,M.YAMAGUCHI,S.FUKIYA, REMARK 1 AUTH 2 A.YOKOTA,H.ASHIDA,H.KUMAGAI,M.KITAOKA,K.YAMAMOTO,T.KATAYAMA REMARK 1 TITL LACTO-N-BIOSIDASE ENCODED BY A NOVEL GENE OF BIFIDOBACTERIUM REMARK 1 TITL 2 LONGUM SUBSPECIES LONGUM SHOWS UNIQUE SUBSTRATE SPECIFICITY REMARK 1 TITL 3 AND REQUIRES A DESIGNATED CHAPERONE FOR ITS ACTIVE REMARK 1 TITL 4 EXPRESSION. REMARK 1 REF J. BIOL. CHEM. V. 288 25194 2013 REMARK 1 REFN ESSN 1083-351X REMARK 1 PMID 23843461 REMARK 1 DOI 10.1074/JBC.M113.484733 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 102.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 114879 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1991 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8346 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8936 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 1110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.267 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9188 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 8094 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12526 ; 1.867 ; 1.925 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18592 ; 1.079 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1162 ; 7.839 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 476 ;42.031 ;25.378 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1350 ;12.801 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;13.338 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1346 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10954 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2210 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4654 ; 3.241 ; 3.403 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4653 ; 3.240 ; 3.402 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5814 ; 3.857 ; 5.083 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5815 ; 3.858 ; 5.084 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4534 ; 3.579 ; 3.573 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4535 ; 3.578 ; 3.573 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6713 ; 4.708 ; 5.284 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 11024 ; 6.061 ;41.467 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 10674 ; 5.877 ;40.688 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5GQF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1300001291. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116978 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 102.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.73600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM FLUORIDE, 0.1 M MES REMARK 280 -NAOH, 20-21% (V/V) PEG3350, 5% MPD, PH 6.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.01750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.09000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 71.81250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.09000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.01750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 71.81250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 30 REMARK 465 GLN A 31 REMARK 465 SER A 32 REMARK 465 ALA A 33 REMARK 465 THR A 34 REMARK 465 GLN A 35 REMARK 465 GLY A 36 REMARK 465 LYS A 37 REMARK 465 GLU A 38 REMARK 465 THR A 39 REMARK 465 ALA A 40 REMARK 465 THR A 41 REMARK 465 THR A 42 REMARK 465 THR A 43 REMARK 465 SER A 44 REMARK 465 SER A 45 REMARK 465 LEU A 628 REMARK 465 GLU A 629 REMARK 465 HIS A 630 REMARK 465 HIS A 631 REMARK 465 HIS A 632 REMARK 465 HIS A 633 REMARK 465 HIS A 634 REMARK 465 HIS A 635 REMARK 465 MET B 30 REMARK 465 GLN B 31 REMARK 465 SER B 32 REMARK 465 ALA B 33 REMARK 465 THR B 34 REMARK 465 GLN B 35 REMARK 465 GLY B 36 REMARK 465 LYS B 37 REMARK 465 GLU B 38 REMARK 465 THR B 39 REMARK 465 ALA B 40 REMARK 465 THR B 41 REMARK 465 THR B 42 REMARK 465 THR B 43 REMARK 465 SER B 44 REMARK 465 SER B 45 REMARK 465 LEU B 628 REMARK 465 GLU B 629 REMARK 465 HIS B 630 REMARK 465 HIS B 631 REMARK 465 HIS B 632 REMARK 465 HIS B 633 REMARK 465 HIS B 634 REMARK 465 HIS B 635 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 362 CA SER A 362 CB 0.095 REMARK 500 GLU A 513 CD GLU A 513 OE2 0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 142 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP A 307 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 350 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 350 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP A 359 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 459 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 292 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP B 609 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 107 143.88 -170.13 REMARK 500 ASN A 177 72.71 -155.55 REMARK 500 ASP A 184 61.86 -160.82 REMARK 500 ASP A 198 37.95 -98.99 REMARK 500 GLU A 219 36.96 -145.17 REMARK 500 ASP A 359 119.24 -161.95 REMARK 500 TYR A 370 69.44 -103.80 REMARK 500 ASN A 404 10.06 84.50 REMARK 500 ASP A 411 -117.27 -120.34 REMARK 500 ASP A 418 -168.71 -79.76 REMARK 500 ALA A 436 156.44 73.85 REMARK 500 ASN A 442 -173.90 68.70 REMARK 500 ASN A 493 5.20 -151.10 REMARK 500 ASN A 500 19.18 55.96 REMARK 500 SER A 519 19.80 -145.44 REMARK 500 ASN A 533 33.05 73.12 REMARK 500 GLU A 607 -62.00 -125.12 REMARK 500 SER B 117 -164.73 -161.56 REMARK 500 ASP B 184 67.48 -155.22 REMARK 500 GLU B 219 30.90 -152.51 REMARK 500 ASP B 289 60.94 61.56 REMARK 500 TYR B 370 69.68 -100.17 REMARK 500 ASP B 411 -119.40 -120.52 REMARK 500 ALA B 436 162.79 77.33 REMARK 500 ASN B 442 -179.37 70.05 REMARK 500 ASN B 493 9.39 -153.79 REMARK 500 SER B 496 147.71 -172.92 REMARK 500 ALA B 506 53.98 -97.77 REMARK 500 SER B 519 17.66 -146.49 REMARK 500 ASN B 533 35.65 72.23 REMARK 500 ASP B 603 18.11 59.81 REMARK 500 GLU B 607 -64.02 -130.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 617 ARG B 618 149.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1327 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A1328 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A1329 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A1330 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH B1375 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B1376 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B1377 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH B1378 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B1379 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH B1380 DISTANCE = 6.31 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 178 OD1 REMARK 620 2 ASP A 179 O 91.3 REMARK 620 3 VAL A 182 O 169.5 81.3 REMARK 620 4 ASP A 238 OD2 84.8 81.4 101.2 REMARK 620 5 HOH A 878 O 97.7 157.8 91.9 79.2 REMARK 620 6 HOH A1173 O 94.4 78.0 76.9 159.3 121.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 810 O REMARK 620 2 HOH A 870 O 90.4 REMARK 620 3 HOH A 896 O 86.7 90.2 REMARK 620 4 HOH A 913 O 87.4 90.6 174.0 REMARK 620 5 HOH A 921 O 90.3 178.3 88.3 91.0 REMARK 620 6 HOH A 965 O 173.8 90.6 87.1 98.8 88.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 178 OD1 REMARK 620 2 ASP B 179 O 92.2 REMARK 620 3 VAL B 182 O 168.4 79.1 REMARK 620 4 ASP B 238 OD2 87.0 80.7 99.0 REMARK 620 5 HOH B 925 O 99.9 156.2 91.0 79.6 REMARK 620 6 HOH B1073 O 79.0 140.5 102.8 136.1 62.6 REMARK 620 7 HOH B1191 O 88.5 81.3 82.7 161.3 119.1 60.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 861 O REMARK 620 2 HOH B 890 O 89.6 REMARK 620 3 HOH B 951 O 84.0 90.8 REMARK 620 4 HOH B 959 O 171.8 92.8 88.1 REMARK 620 5 HOH B 963 O 89.0 178.3 88.0 88.4 REMARK 620 6 HOH B1140 O 90.1 90.9 173.9 97.7 90.1 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GQC RELATED DB: PDB REMARK 900 RELATED ID: 5GQG RELATED DB: PDB DBREF1 5GQF A 31 625 UNP A0A024QYS6_BIFLN DBREF2 5GQF A A0A024QYS6 31 625 DBREF1 5GQF B 31 625 UNP A0A024QYS6_BIFLN DBREF2 5GQF B A0A024QYS6 31 625 SEQADV 5GQF MET A 30 UNP A0A024QYS EXPRESSION TAG SEQADV 5GQF ALA A 626 UNP A0A024QYS EXPRESSION TAG SEQADV 5GQF ALA A 627 UNP A0A024QYS EXPRESSION TAG SEQADV 5GQF LEU A 628 UNP A0A024QYS EXPRESSION TAG SEQADV 5GQF GLU A 629 UNP A0A024QYS EXPRESSION TAG SEQADV 5GQF HIS A 630 UNP A0A024QYS EXPRESSION TAG SEQADV 5GQF HIS A 631 UNP A0A024QYS EXPRESSION TAG SEQADV 5GQF HIS A 632 UNP A0A024QYS EXPRESSION TAG SEQADV 5GQF HIS A 633 UNP A0A024QYS EXPRESSION TAG SEQADV 5GQF HIS A 634 UNP A0A024QYS EXPRESSION TAG SEQADV 5GQF HIS A 635 UNP A0A024QYS EXPRESSION TAG SEQADV 5GQF MET B 30 UNP A0A024QYS EXPRESSION TAG SEQADV 5GQF ALA B 626 UNP A0A024QYS EXPRESSION TAG SEQADV 5GQF ALA B 627 UNP A0A024QYS EXPRESSION TAG SEQADV 5GQF LEU B 628 UNP A0A024QYS EXPRESSION TAG SEQADV 5GQF GLU B 629 UNP A0A024QYS EXPRESSION TAG SEQADV 5GQF HIS B 630 UNP A0A024QYS EXPRESSION TAG SEQADV 5GQF HIS B 631 UNP A0A024QYS EXPRESSION TAG SEQADV 5GQF HIS B 632 UNP A0A024QYS EXPRESSION TAG SEQADV 5GQF HIS B 633 UNP A0A024QYS EXPRESSION TAG SEQADV 5GQF HIS B 634 UNP A0A024QYS EXPRESSION TAG SEQADV 5GQF HIS B 635 UNP A0A024QYS EXPRESSION TAG SEQRES 1 A 606 MET GLN SER ALA THR GLN GLY LYS GLU THR ALA THR THR SEQRES 2 A 606 THR SER SER GLY THR THR TYR TYR VAL SER SER ALA HIS SEQRES 3 A 606 GLY ASP ASP ALA ASN ALA GLY THR SER GLU ASN ALA PRO SEQRES 4 A 606 TRP LYS SER LEU THR LYS VAL ASN ASP ILE ALA SER ASP SEQRES 5 A 606 LEU GLY PRO GLY ASP SER VAL LEU LEU GLU TYR GLY SER SEQRES 6 A 606 GLU PHE ASN ASP GLN TYR LEU HIS ILE LYS ASP THR ALA SEQRES 7 A 606 GLY ASN ALA ASP ALA PRO ILE THR ILE SER ALA TYR GLY SEQRES 8 A 606 ASP ALA ASP GLU GLY LYS PRO VAL ILE ALA SER ASN GLY SEQRES 9 A 606 VAL LYS GLY SER GLN TRP GLU GLN ASP TYR ARG ALA ASN SEQRES 10 A 606 VAL GLY ASN HIS LYS ASN LYS GLY THR VAL SER THR THR SEQRES 11 A 606 LEU LEU LEU LYS ASP VAL SER TYR ILE THR VAL SER ASN SEQRES 12 A 606 LEU GLU ILE THR ASN ASP ASP ALA ASP VAL TYR ASP PRO SEQRES 13 A 606 ILE ASP THR TRP LYS TRP THR ASP THR PRO ASP SER ASP SEQRES 14 A 606 GLY THR LYS LEU ASP ARG SER ALA SER ARG MET ASP ARG SEQRES 15 A 606 THR GLY VAL ALA GLY ILE ALA GLU ASN GLY ALA THR MET SEQRES 16 A 606 SER ASN VAL THR LEU ASP ASN LEU TYR ILE HIS ASP VAL SEQRES 17 A 606 ASP GLY ASN ILE TYR ASN LYS HIS MET ALA ASN GLY GLY SEQRES 18 A 606 ILE TYR PHE MET ALA HIS TYR PRO MET GLU ASN THR SER SEQRES 19 A 606 ALA GLU THR ASP VAL TRP LEU ARG GLU HIS VAL SER ARG SEQRES 20 A 606 PHE ASP HIS VAL THR ILE ARG ASN SER THR VAL LYS ASP SEQRES 21 A 606 VAL ASP ARG TRP GLY ILE ALA VAL GLY TYR THR ALA TYR SEQRES 22 A 606 LEU ASN TYR ILE ASP ALA ASN TYR GLY ASP GLY SER ILE SEQRES 23 A 606 ASP ASP ALA LEU ILE ALA LYS TYR GLY SER THR ASN VAL SEQRES 24 A 606 ARG ILE GLU ASN ASN TYR VAL LYS GLY ALA GLY GLY ASP SEQRES 25 A 606 ALA ILE THR LEU MET TYR CYS ASP ARG PRO VAL ILE GLU SEQRES 26 A 606 HIS ASN VAL GLY ASP SER VAL SER LYS HIS ILE ASN THR SEQRES 27 A 606 GLN ASP TYR THR GLN PRO GLY SER TYR GLY GLY ARG VAL SEQRES 28 A 606 ALA ALA GLY ILE TRP PRO TRP ARG CYS LYS ASP PRO VAL SEQRES 29 A 606 PHE GLN TYR ASN GLU MET TYR ASN ASN LEU ASN ALA GLU SEQRES 30 A 606 HIS GLY ASN GLY ASP GLY GLN ALA TRP ASP ALA ASP TYR SEQRES 31 A 606 GLY ASP GLY THR LEU TYR GLN TYR ASN TYR SER TYR GLY SEQRES 32 A 606 ASN SER PHE ALA SER LEU MET ILE CYS ASN TRP TYR ALA SEQRES 33 A 606 VAL ASN THR THR PHE ARG TYR ASN ILE SER GLN ASN ASP SEQRES 34 A 606 ARG GLN GLY VAL PHE ASP LEU PRO SER ASN GLY PRO GLY SEQRES 35 A 606 ASN HIS ILE TYR ASN ASN THR VAL TYR VAL ASP ALA ASP SEQRES 36 A 606 SER GLN VAL LEU THR LYS ARG SER ASN SER GLN SER LEU SEQRES 37 A 606 PHE GLU ASN ASN ILE PHE ILE ASN ALA THR ASN THR LYS SEQRES 38 A 606 LYS THR GLU THR TRP ASN ARG GLY SER GLN ASN GLY GLY SEQRES 39 A 606 GLN THR TYR ASP ASN ASN MET TYR VAL ASN TYR ALA ASN SEQRES 40 A 606 LYS PRO THR SER ASP ALA ASN ALA ILE GLU ALA ASP ASP SEQRES 41 A 606 VAL SER ALA VAL LEU ALA GLY ALA GLY SER ALA PRO THR SEQRES 42 A 606 SER ALA LEU LYS SER GLY ALA GLU HIS ALA ARG THR GLY SEQRES 43 A 606 GLU LYS ALA ALA PHE ASP GLY TYR ARG PRO VAL ALA GLY SEQRES 44 A 606 SER LYS ALA ILE ASN ALA GLY LYS VAL VAL SER ASP LEU SEQRES 45 A 606 ASN ASP TYR ALA VAL GLU ASN ASP PHE LEU GLY ASN ALA SEQRES 46 A 606 VAL LYS GLY ARG PRO ASP LEU GLY ALA VAL GLU ALA ALA SEQRES 47 A 606 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 606 MET GLN SER ALA THR GLN GLY LYS GLU THR ALA THR THR SEQRES 2 B 606 THR SER SER GLY THR THR TYR TYR VAL SER SER ALA HIS SEQRES 3 B 606 GLY ASP ASP ALA ASN ALA GLY THR SER GLU ASN ALA PRO SEQRES 4 B 606 TRP LYS SER LEU THR LYS VAL ASN ASP ILE ALA SER ASP SEQRES 5 B 606 LEU GLY PRO GLY ASP SER VAL LEU LEU GLU TYR GLY SER SEQRES 6 B 606 GLU PHE ASN ASP GLN TYR LEU HIS ILE LYS ASP THR ALA SEQRES 7 B 606 GLY ASN ALA ASP ALA PRO ILE THR ILE SER ALA TYR GLY SEQRES 8 B 606 ASP ALA ASP GLU GLY LYS PRO VAL ILE ALA SER ASN GLY SEQRES 9 B 606 VAL LYS GLY SER GLN TRP GLU GLN ASP TYR ARG ALA ASN SEQRES 10 B 606 VAL GLY ASN HIS LYS ASN LYS GLY THR VAL SER THR THR SEQRES 11 B 606 LEU LEU LEU LYS ASP VAL SER TYR ILE THR VAL SER ASN SEQRES 12 B 606 LEU GLU ILE THR ASN ASP ASP ALA ASP VAL TYR ASP PRO SEQRES 13 B 606 ILE ASP THR TRP LYS TRP THR ASP THR PRO ASP SER ASP SEQRES 14 B 606 GLY THR LYS LEU ASP ARG SER ALA SER ARG MET ASP ARG SEQRES 15 B 606 THR GLY VAL ALA GLY ILE ALA GLU ASN GLY ALA THR MET SEQRES 16 B 606 SER ASN VAL THR LEU ASP ASN LEU TYR ILE HIS ASP VAL SEQRES 17 B 606 ASP GLY ASN ILE TYR ASN LYS HIS MET ALA ASN GLY GLY SEQRES 18 B 606 ILE TYR PHE MET ALA HIS TYR PRO MET GLU ASN THR SER SEQRES 19 B 606 ALA GLU THR ASP VAL TRP LEU ARG GLU HIS VAL SER ARG SEQRES 20 B 606 PHE ASP HIS VAL THR ILE ARG ASN SER THR VAL LYS ASP SEQRES 21 B 606 VAL ASP ARG TRP GLY ILE ALA VAL GLY TYR THR ALA TYR SEQRES 22 B 606 LEU ASN TYR ILE ASP ALA ASN TYR GLY ASP GLY SER ILE SEQRES 23 B 606 ASP ASP ALA LEU ILE ALA LYS TYR GLY SER THR ASN VAL SEQRES 24 B 606 ARG ILE GLU ASN ASN TYR VAL LYS GLY ALA GLY GLY ASP SEQRES 25 B 606 ALA ILE THR LEU MET TYR CYS ASP ARG PRO VAL ILE GLU SEQRES 26 B 606 HIS ASN VAL GLY ASP SER VAL SER LYS HIS ILE ASN THR SEQRES 27 B 606 GLN ASP TYR THR GLN PRO GLY SER TYR GLY GLY ARG VAL SEQRES 28 B 606 ALA ALA GLY ILE TRP PRO TRP ARG CYS LYS ASP PRO VAL SEQRES 29 B 606 PHE GLN TYR ASN GLU MET TYR ASN ASN LEU ASN ALA GLU SEQRES 30 B 606 HIS GLY ASN GLY ASP GLY GLN ALA TRP ASP ALA ASP TYR SEQRES 31 B 606 GLY ASP GLY THR LEU TYR GLN TYR ASN TYR SER TYR GLY SEQRES 32 B 606 ASN SER PHE ALA SER LEU MET ILE CYS ASN TRP TYR ALA SEQRES 33 B 606 VAL ASN THR THR PHE ARG TYR ASN ILE SER GLN ASN ASP SEQRES 34 B 606 ARG GLN GLY VAL PHE ASP LEU PRO SER ASN GLY PRO GLY SEQRES 35 B 606 ASN HIS ILE TYR ASN ASN THR VAL TYR VAL ASP ALA ASP SEQRES 36 B 606 SER GLN VAL LEU THR LYS ARG SER ASN SER GLN SER LEU SEQRES 37 B 606 PHE GLU ASN ASN ILE PHE ILE ASN ALA THR ASN THR LYS SEQRES 38 B 606 LYS THR GLU THR TRP ASN ARG GLY SER GLN ASN GLY GLY SEQRES 39 B 606 GLN THR TYR ASP ASN ASN MET TYR VAL ASN TYR ALA ASN SEQRES 40 B 606 LYS PRO THR SER ASP ALA ASN ALA ILE GLU ALA ASP ASP SEQRES 41 B 606 VAL SER ALA VAL LEU ALA GLY ALA GLY SER ALA PRO THR SEQRES 42 B 606 SER ALA LEU LYS SER GLY ALA GLU HIS ALA ARG THR GLY SEQRES 43 B 606 GLU LYS ALA ALA PHE ASP GLY TYR ARG PRO VAL ALA GLY SEQRES 44 B 606 SER LYS ALA ILE ASN ALA GLY LYS VAL VAL SER ASP LEU SEQRES 45 B 606 ASN ASP TYR ALA VAL GLU ASN ASP PHE LEU GLY ASN ALA SEQRES 46 B 606 VAL LYS GLY ARG PRO ASP LEU GLY ALA VAL GLU ALA ALA SEQRES 47 B 606 LEU GLU HIS HIS HIS HIS HIS HIS HET NAG C 1 15 HET GAL C 2 11 HET NAG D 1 15 HET GAL D 2 11 HET CA A 701 1 HET CA A 702 1 HET CA B 701 1 HET CA B 702 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 5 CA 4(CA 2+) FORMUL 9 HOH *1110(H2 O) HELIX 1 AA1 LEU A 72 ALA A 79 1 8 HELIX 2 AA2 SER A 80 LEU A 82 5 3 HELIX 3 AA3 ASP A 121 GLY A 125 5 5 HELIX 4 AA4 VAL A 134 GLY A 136 5 3 HELIX 5 AA5 PRO A 185 TRP A 189 5 5 HELIX 6 AA6 SER A 263 HIS A 273 1 11 HELIX 7 AA7 TYR A 302 ASP A 307 1 6 HELIX 8 AA8 ASP A 316 GLY A 324 1 9 HELIX 9 AA9 ASN A 404 GLY A 408 5 5 HELIX 10 AB1 SER A 519 GLY A 522 5 4 HELIX 11 AB2 ASP A 549 VAL A 553 5 5 HELIX 12 AB3 PHE A 580 ARG A 584 5 5 HELIX 13 AB4 LEU B 72 ALA B 79 1 8 HELIX 14 AB5 SER B 80 LEU B 82 5 3 HELIX 15 AB6 ASP B 121 GLY B 125 5 5 HELIX 16 AB7 VAL B 134 GLY B 136 5 3 HELIX 17 AB8 PRO B 185 TRP B 189 5 5 HELIX 18 AB9 SER B 263 HIS B 273 1 11 HELIX 19 AC1 TYR B 302 ASP B 307 1 6 HELIX 20 AC2 ASP B 316 GLY B 324 1 9 HELIX 21 AC3 ASN B 404 GLY B 408 5 5 HELIX 22 AC4 SER B 519 GLY B 522 5 4 HELIX 23 AC5 ASP B 549 VAL B 553 5 5 HELIX 24 AC6 PHE B 580 ARG B 584 5 5 SHEET 1 AA1 8 THR A 48 VAL A 51 0 SHEET 2 AA1 8 SER A 87 GLU A 91 1 O LEU A 89 N TYR A 49 SHEET 3 AA1 8 ILE A 114 TYR A 119 1 O THR A 115 N VAL A 88 SHEET 4 AA1 8 ILE A 168 SER A 171 1 O SER A 171 N ILE A 116 SHEET 5 AA1 8 THR A 223 ASP A 230 1 O THR A 228 N VAL A 170 SHEET 6 AA1 8 ARG A 276 ARG A 283 1 O ARG A 283 N LEU A 229 SHEET 7 AA1 8 SER A 325 GLU A 331 1 O ARG A 329 N VAL A 280 SHEET 8 AA1 8 CYS A 348 ASP A 349 1 O ASP A 349 N SER A 325 SHEET 1 AA214 THR A 48 VAL A 51 0 SHEET 2 AA214 SER A 87 GLU A 91 1 O LEU A 89 N TYR A 49 SHEET 3 AA214 ILE A 114 TYR A 119 1 O THR A 115 N VAL A 88 SHEET 4 AA214 ILE A 168 SER A 171 1 O SER A 171 N ILE A 116 SHEET 5 AA214 THR A 223 ASP A 230 1 O THR A 228 N VAL A 170 SHEET 6 AA214 ARG A 276 ARG A 283 1 O ARG A 283 N LEU A 229 SHEET 7 AA214 SER A 325 GLU A 331 1 O ARG A 329 N VAL A 280 SHEET 8 AA214 VAL A 352 GLU A 354 1 O VAL A 352 N ILE A 330 SHEET 9 AA214 VAL A 393 GLN A 395 1 O VAL A 393 N ILE A 353 SHEET 10 AA214 LEU A 424 GLN A 426 1 O LEU A 424 N PHE A 394 SHEET 11 AA214 THR A 449 ARG A 451 1 O THR A 449 N TYR A 425 SHEET 12 AA214 HIS A 473 TYR A 475 1 O HIS A 473 N PHE A 450 SHEET 13 AA214 SER A 496 GLU A 499 1 O LEU A 497 N ILE A 474 SHEET 14 AA214 GLN A 524 ASP A 527 1 O THR A 525 N PHE A 498 SHEET 1 AA314 GLU A 95 ASN A 97 0 SHEET 2 AA314 VAL A 128 ALA A 130 1 O VAL A 128 N PHE A 96 SHEET 3 AA314 GLU A 174 ASN A 177 1 O GLU A 174 N ILE A 129 SHEET 4 AA314 TYR A 233 ASP A 238 1 O TYR A 233 N ILE A 175 SHEET 5 AA314 THR A 286 ASP A 291 1 O THR A 286 N ILE A 234 SHEET 6 AA314 TYR A 334 ALA A 338 1 O TYR A 334 N VAL A 287 SHEET 7 AA314 VAL A 357 ASP A 359 1 O VAL A 357 N VAL A 335 SHEET 8 AA314 GLU A 398 TYR A 400 1 O GLU A 398 N GLY A 358 SHEET 9 AA314 TYR A 429 TYR A 431 1 O TYR A 429 N MET A 399 SHEET 10 AA314 ILE A 454 GLN A 456 1 O GLN A 456 N SER A 430 SHEET 11 AA314 THR A 478 VAL A 481 1 O TYR A 480 N SER A 455 SHEET 12 AA314 ILE A 502 ASN A 505 1 O ILE A 504 N VAL A 481 SHEET 13 AA314 MET A 530 VAL A 532 1 O MET A 530 N PHE A 503 SHEET 14 AA314 ILE A 545 ALA A 547 1 O ILE A 545 N TYR A 531 SHEET 1 AA4 3 LEU A 101 ALA A 107 0 SHEET 2 AA4 3 LYS A 153 SER A 166 1 O LYS A 163 N ASP A 105 SHEET 3 AA4 3 GLN A 138 ASP A 142 -1 N GLN A 141 O GLY A 154 SHEET 1 AA5 7 LEU A 101 ALA A 107 0 SHEET 2 AA5 7 LYS A 153 SER A 166 1 O LYS A 163 N ASP A 105 SHEET 3 AA5 7 ASP A 210 ALA A 218 1 O ILE A 217 N LEU A 162 SHEET 4 AA5 7 GLY A 249 ALA A 255 1 O GLY A 250 N VAL A 214 SHEET 5 AA5 7 TRP A 293 THR A 300 1 O GLY A 298 N PHE A 253 SHEET 6 AA5 7 ILE A 343 MET A 346 1 O MET A 346 N VAL A 297 SHEET 7 AA5 7 ILE A 384 TRP A 387 1 O TRP A 387 N LEU A 345 SHEET 1 AA6 3 TRP A 415 ALA A 417 0 SHEET 2 AA6 3 LEU A 438 ILE A 440 1 O MET A 439 N ALA A 417 SHEET 3 AA6 3 PHE A 463 ASP A 464 1 O ASP A 464 N LEU A 438 SHEET 1 AA7 2 GLY A 420 ASP A 421 0 SHEET 2 AA7 2 ALA A 445 VAL A 446 1 O VAL A 446 N GLY A 420 SHEET 1 AA8 8 THR B 48 VAL B 51 0 SHEET 2 AA8 8 SER B 87 GLU B 91 1 O LEU B 89 N TYR B 49 SHEET 3 AA8 8 ILE B 114 TYR B 119 1 O THR B 115 N VAL B 88 SHEET 4 AA8 8 ILE B 168 SER B 171 1 O THR B 169 N ILE B 116 SHEET 5 AA8 8 THR B 223 ASP B 230 1 O THR B 228 N VAL B 170 SHEET 6 AA8 8 ARG B 276 ARG B 283 1 O THR B 281 N LEU B 229 SHEET 7 AA8 8 SER B 325 GLU B 331 1 O GLU B 331 N ILE B 282 SHEET 8 AA8 8 CYS B 348 ASP B 349 1 O ASP B 349 N SER B 325 SHEET 1 AA914 THR B 48 VAL B 51 0 SHEET 2 AA914 SER B 87 GLU B 91 1 O LEU B 89 N TYR B 49 SHEET 3 AA914 ILE B 114 TYR B 119 1 O THR B 115 N VAL B 88 SHEET 4 AA914 ILE B 168 SER B 171 1 O THR B 169 N ILE B 116 SHEET 5 AA914 THR B 223 ASP B 230 1 O THR B 228 N VAL B 170 SHEET 6 AA914 ARG B 276 ARG B 283 1 O THR B 281 N LEU B 229 SHEET 7 AA914 SER B 325 GLU B 331 1 O GLU B 331 N ILE B 282 SHEET 8 AA914 VAL B 352 GLU B 354 1 O VAL B 352 N ILE B 330 SHEET 9 AA914 VAL B 393 GLN B 395 1 O VAL B 393 N ILE B 353 SHEET 10 AA914 LEU B 424 GLN B 426 1 O LEU B 424 N PHE B 394 SHEET 11 AA914 THR B 449 ARG B 451 1 O THR B 449 N TYR B 425 SHEET 12 AA914 HIS B 473 TYR B 475 1 O HIS B 473 N PHE B 450 SHEET 13 AA914 SER B 496 GLU B 499 1 O LEU B 497 N ILE B 474 SHEET 14 AA914 GLN B 524 ASP B 527 1 O THR B 525 N PHE B 498 SHEET 1 AB114 GLU B 95 ASN B 97 0 SHEET 2 AB114 VAL B 128 ALA B 130 1 O VAL B 128 N PHE B 96 SHEET 3 AB114 GLU B 174 ASN B 177 1 O GLU B 174 N ILE B 129 SHEET 4 AB114 TYR B 233 ASP B 238 1 O TYR B 233 N ILE B 175 SHEET 5 AB114 THR B 286 ASP B 291 1 O THR B 286 N ILE B 234 SHEET 6 AB114 TYR B 334 ALA B 338 1 O TYR B 334 N VAL B 287 SHEET 7 AB114 VAL B 357 ASP B 359 1 O VAL B 357 N VAL B 335 SHEET 8 AB114 GLU B 398 TYR B 400 1 O TYR B 400 N GLY B 358 SHEET 9 AB114 TYR B 429 TYR B 431 1 O TYR B 431 N MET B 399 SHEET 10 AB114 ILE B 454 GLN B 456 1 O GLN B 456 N SER B 430 SHEET 11 AB114 THR B 478 VAL B 481 1 O TYR B 480 N SER B 455 SHEET 12 AB114 ILE B 502 ASN B 505 1 O ILE B 504 N VAL B 479 SHEET 13 AB114 MET B 530 VAL B 532 1 O VAL B 532 N PHE B 503 SHEET 14 AB114 ILE B 545 ALA B 547 1 O ILE B 545 N TYR B 531 SHEET 1 AB2 3 LEU B 101 ALA B 107 0 SHEET 2 AB2 3 LYS B 153 SER B 166 1 O LEU B 161 N ILE B 103 SHEET 3 AB2 3 GLN B 138 ASP B 142 -1 N TRP B 139 O VAL B 156 SHEET 1 AB3 7 LEU B 101 ALA B 107 0 SHEET 2 AB3 7 LYS B 153 SER B 166 1 O LEU B 161 N ILE B 103 SHEET 3 AB3 7 ASP B 210 ALA B 218 1 O ILE B 217 N LEU B 162 SHEET 4 AB3 7 GLY B 249 ALA B 255 1 O GLY B 250 N VAL B 214 SHEET 5 AB3 7 TRP B 293 THR B 300 1 O ALA B 296 N ILE B 251 SHEET 6 AB3 7 ILE B 343 MET B 346 1 O MET B 346 N VAL B 297 SHEET 7 AB3 7 ILE B 384 TRP B 387 1 O TRP B 387 N LEU B 345 SHEET 1 AB4 3 TRP B 415 ALA B 417 0 SHEET 2 AB4 3 LEU B 438 ILE B 440 1 O MET B 439 N ALA B 417 SHEET 3 AB4 3 PHE B 463 ASP B 464 1 O ASP B 464 N LEU B 438 SHEET 1 AB5 2 GLY B 420 ASP B 421 0 SHEET 2 AB5 2 ALA B 445 VAL B 446 1 O VAL B 446 N GLY B 420 LINK O3 NAG C 1 C1 GAL C 2 1555 1555 1.40 LINK O3 NAG D 1 C1 GAL D 2 1555 1555 1.44 LINK OD1 ASP A 178 CA CA A 701 1555 1555 2.18 LINK O ASP A 179 CA CA A 701 1555 1555 2.47 LINK O VAL A 182 CA CA A 701 1555 1555 2.23 LINK OD2 ASP A 238 CA CA A 701 1555 1555 2.34 LINK CA CA A 701 O HOH A 878 1555 1555 2.53 LINK CA CA A 701 O HOH A1173 1555 1555 2.58 LINK CA CA A 702 O HOH A 810 1555 1555 2.37 LINK CA CA A 702 O HOH A 870 1555 1555 2.23 LINK CA CA A 702 O HOH A 896 1555 1555 2.14 LINK CA CA A 702 O HOH A 913 1555 1555 2.09 LINK CA CA A 702 O HOH A 921 1555 1555 2.30 LINK CA CA A 702 O HOH A 965 1555 1555 2.22 LINK OD1 ASP B 178 CA CA B 701 1555 1555 2.29 LINK O ASP B 179 CA CA B 701 1555 1555 2.45 LINK O VAL B 182 CA CA B 701 1555 1555 2.15 LINK OD2 ASP B 238 CA CA B 701 1555 1555 2.39 LINK CA CA B 701 O HOH B 925 1555 1555 2.45 LINK CA CA B 701 O HOH B1073 1555 1555 2.79 LINK CA CA B 701 O HOH B1191 1555 1555 2.39 LINK CA CA B 702 O HOH B 861 1555 1555 2.21 LINK CA CA B 702 O HOH B 890 1555 1555 2.25 LINK CA CA B 702 O HOH B 951 1555 1555 2.16 LINK CA CA B 702 O HOH B 959 1555 1555 2.18 LINK CA CA B 702 O HOH B 963 1555 1555 2.27 LINK CA CA B 702 O HOH B1140 1555 1555 2.05 CISPEP 1 ASP A 291 ARG A 292 0 -3.83 CISPEP 2 ASP B 291 ARG B 292 0 -6.39 CRYST1 64.035 143.625 146.180 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015616 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006963 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006841 0.00000