HEADER APOPTOSIS 08-AUG-16 5GQQ TITLE STRUCTURE OF ALG-2/HEBP2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEME-BINDING PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 20-197; COMPND 5 SYNONYM: PLACENTAL PROTEIN 23,PP23,PROTEIN SOUL; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROGRAMMED CELL DEATH PROTEIN 6; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: UNP RESIDUES 24-191; COMPND 11 SYNONYM: APOPTOSIS-LINKED GENE 2 PROTEIN,PROBABLE CALCIUM-BINDING COMPND 12 PROTEIN ALG-2; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HEBP2, C6ORF34, SOUL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3)PLYSS AG; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: PDCD6, ALG2; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3)PLYSS AG KEYWDS EF HANDS, COMPLEX, CALCIUM IONS, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR X.LIU,J.MA,H.ZHANG,Y.FENG REVDAT 3 20-MAR-24 5GQQ 1 LINK REVDAT 2 16-AUG-17 5GQQ 1 JRNL REMARK REVDAT 1 02-NOV-16 5GQQ 0 JRNL AUTH J.MA,X.ZHANG,Y.FENG,H.ZHANG,X.WANG,Y.ZHENG,W.QIAO,X.LIU JRNL TITL STRUCTURAL AND FUNCTIONAL STUDY OF APOPTOSIS-LINKED JRNL TITL 2 GENE-2HEME-BINDING PROTEIN 2 INTERACTIONS IN HIV-1 JRNL TITL 3 PRODUCTION. JRNL REF J. BIOL. CHEM. V. 291 26670 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27784779 JRNL DOI 10.1074/JBC.M116.752444 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 51901 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.9367 - 5.8498 0.87 2352 131 0.1732 0.1851 REMARK 3 2 5.8498 - 4.6519 0.94 2558 148 0.1598 0.1793 REMARK 3 3 4.6519 - 4.0664 0.91 2493 134 0.1509 0.1797 REMARK 3 4 4.0664 - 3.6958 0.93 2523 136 0.1731 0.2150 REMARK 3 5 3.6958 - 3.4315 0.94 2570 141 0.1914 0.2394 REMARK 3 6 3.4315 - 3.2296 0.94 2553 140 0.2000 0.2287 REMARK 3 7 3.2296 - 3.0681 0.95 2612 161 0.1995 0.2421 REMARK 3 8 3.0681 - 2.9347 0.96 2599 140 0.2117 0.2199 REMARK 3 9 2.9347 - 2.8219 0.96 2634 137 0.2114 0.2624 REMARK 3 10 2.8219 - 2.7246 0.97 2633 149 0.2142 0.2702 REMARK 3 11 2.7246 - 2.6395 0.97 2666 114 0.2183 0.2070 REMARK 3 12 2.6395 - 2.5641 0.97 2674 127 0.2196 0.2677 REMARK 3 13 2.5641 - 2.4967 0.97 2645 120 0.2342 0.3297 REMARK 3 14 2.4967 - 2.4358 0.97 2680 143 0.2460 0.2661 REMARK 3 15 2.4358 - 2.3805 0.97 2619 150 0.2616 0.2980 REMARK 3 16 2.3805 - 2.3299 0.97 2697 145 0.2473 0.2929 REMARK 3 17 2.3299 - 2.2833 0.97 2642 142 0.2658 0.3159 REMARK 3 18 2.2833 - 2.2402 0.97 2575 140 0.2679 0.2926 REMARK 3 19 2.2402 - 2.2002 0.91 2544 134 0.2884 0.3248 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5771 REMARK 3 ANGLE : 1.208 7815 REMARK 3 CHIRALITY : 0.082 819 REMARK 3 PLANARITY : 0.006 1023 REMARK 3 DIHEDRAL : 16.821 2125 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5GQQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1300001296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, 2 M NACL, PH 5.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -150.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER D 189 REMARK 465 ILE D 190 REMARK 465 VAL D 191 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE1 TRP D 89 O HOH D 301 1.85 REMARK 500 NH1 ARG D 167 O HOH D 302 1.96 REMARK 500 OD1 ASN B 180 O HOH B 201 1.98 REMARK 500 O HOH C 365 O HOH C 366 2.02 REMARK 500 O ALA B 133 O HOH B 202 2.06 REMARK 500 O HOH A 232 O HOH A 252 2.12 REMARK 500 NH1 ARG D 160 O HOH D 303 2.12 REMARK 500 O SER A 37 O HOH A 201 2.13 REMARK 500 O HOH A 227 O HOH A 277 2.13 REMARK 500 O HOH A 260 O HOH D 315 2.14 REMARK 500 OE2 GLU B 164 O HOH B 203 2.14 REMARK 500 O HOH C 351 O HOH C 352 2.15 REMARK 500 OE2 GLU A 94 O HOH A 202 2.16 REMARK 500 O HOH C 302 O HOH C 368 2.17 REMARK 500 NH2 ARG A 163 O HOH A 203 2.17 REMARK 500 N VAL B 20 O HOH B 204 2.17 REMARK 500 O PRO B 35 N SER B 37 2.18 REMARK 500 NE2 GLN B 115 O HOH B 205 2.18 REMARK 500 NH1 ARG B 163 O HOH B 206 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 378 O HOH D 364 1655 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 30 -120.61 -177.86 REMARK 500 GLN A 34 136.78 69.74 REMARK 500 PRO A 35 -103.37 -94.69 REMARK 500 SER A 97 120.26 -176.94 REMARK 500 ASN A 180 143.18 62.07 REMARK 500 SER A 181 106.32 59.75 REMARK 500 LEU A 185 -79.43 -87.58 REMARK 500 ALA B 31 -142.61 59.98 REMARK 500 PRO B 33 -96.28 -78.04 REMARK 500 LYS B 76 56.07 -145.99 REMARK 500 VAL B 183 -93.61 -116.07 REMARK 500 LYS B 184 49.27 167.61 REMARK 500 LEU B 185 -87.00 -58.90 REMARK 500 ASN C 76 72.17 -109.21 REMARK 500 ASP C 128 25.81 -71.43 REMARK 500 ARG C 143 0.94 -157.86 REMARK 500 THR C 170 0.55 -63.87 REMARK 500 ASP D 169 65.89 -105.71 REMARK 500 ASP D 173 -168.17 -165.18 REMARK 500 VAL D 187 51.36 -104.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 36 OD1 REMARK 620 2 ASP C 38 OD2 82.4 REMARK 620 3 SER C 40 OG 94.4 75.7 REMARK 620 4 VAL C 42 O 92.3 148.3 73.6 REMARK 620 5 GLU C 47 OE1 107.2 131.0 146.8 80.4 REMARK 620 6 GLU C 47 OE2 97.3 77.5 149.0 134.1 53.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 103 OD1 REMARK 620 2 ASP C 105 OD2 74.9 REMARK 620 3 SER C 107 OG 86.8 91.4 REMARK 620 4 MET C 109 O 78.1 149.2 72.3 REMARK 620 5 GLU C 114 OE1 100.0 120.1 148.5 79.0 REMARK 620 6 GLU C 114 OE2 81.9 66.4 157.0 124.1 54.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 169 OD1 REMARK 620 2 ASP C 171 OD1 90.0 REMARK 620 3 ASP C 173 OD1 64.8 95.4 REMARK 620 4 TRP C 175 O 66.5 156.0 71.4 REMARK 620 5 HOH C 343 O 96.5 110.3 148.7 78.2 REMARK 620 6 HOH C 360 O 138.0 131.4 110.3 72.5 65.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 36 OD1 REMARK 620 2 ASP D 38 OD2 85.2 REMARK 620 3 SER D 40 OG 94.5 77.7 REMARK 620 4 VAL D 42 O 95.6 152.2 74.5 REMARK 620 5 GLU D 47 OE1 102.7 128.9 149.0 78.2 REMARK 620 6 GLU D 47 OE2 96.1 75.9 150.5 131.3 53.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 103 OD1 REMARK 620 2 ASP D 105 OD2 77.6 REMARK 620 3 SER D 107 OG 86.1 87.6 REMARK 620 4 MET D 109 O 73.9 147.2 74.8 REMARK 620 5 GLU D 114 OE1 100.4 117.3 155.1 83.9 REMARK 620 6 GLU D 114 OE2 80.4 65.8 152.1 123.6 52.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 169 OD1 REMARK 620 2 ASP D 171 OD1 60.4 REMARK 620 3 ASP D 171 OD2 101.3 45.9 REMARK 620 4 TRP D 175 O 84.5 110.1 138.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA D 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 204 DBREF 5GQQ A 20 197 UNP Q9Y5Z4 HEBP2_HUMAN 20 197 DBREF 5GQQ B 20 197 UNP Q9Y5Z4 HEBP2_HUMAN 20 197 DBREF 5GQQ C 24 191 UNP O75340 PDCD6_HUMAN 24 191 DBREF 5GQQ D 24 191 UNP O75340 PDCD6_HUMAN 24 191 SEQADV 5GQQ GLY C 22 UNP O75340 EXPRESSION TAG SEQADV 5GQQ SER C 23 UNP O75340 EXPRESSION TAG SEQADV 5GQQ GLY D 22 UNP O75340 EXPRESSION TAG SEQADV 5GQQ SER D 23 UNP O75340 EXPRESSION TAG SEQRES 1 A 178 VAL GLU THR PRO GLY TRP LYS ALA PRO GLU ASP ALA GLY SEQRES 2 A 178 PRO GLN PRO GLY SER TYR GLU ILE ARG HIS TYR GLY PRO SEQRES 3 A 178 ALA LYS TRP VAL SER THR SER VAL GLU SER MET ASP TRP SEQRES 4 A 178 ASP SER ALA ILE GLN THR GLY PHE THR LYS LEU ASN SER SEQRES 5 A 178 TYR ILE GLN GLY LYS ASN GLU LYS GLU MET LYS ILE LYS SEQRES 6 A 178 MET THR ALA PRO VAL THR SER TYR VAL GLU PRO GLY SER SEQRES 7 A 178 GLY PRO PHE SER GLU SER THR ILE THR ILE SER LEU TYR SEQRES 8 A 178 ILE PRO SER GLU GLN GLN PHE ASP PRO PRO ARG PRO LEU SEQRES 9 A 178 GLU SER ASP VAL PHE ILE GLU ASP ARG ALA GLU MET THR SEQRES 10 A 178 VAL PHE VAL ARG SER PHE ASP GLY PHE SER SER ALA GLN SEQRES 11 A 178 LYS ASN GLN GLU GLN LEU LEU THR LEU ALA SER ILE LEU SEQRES 12 A 178 ARG GLU ASP GLY LYS VAL PHE ASP GLU LYS VAL TYR TYR SEQRES 13 A 178 THR ALA GLY TYR ASN SER PRO VAL LYS LEU LEU ASN ARG SEQRES 14 A 178 ASN ASN GLU VAL TRP LEU ILE GLN LYS SEQRES 1 B 178 VAL GLU THR PRO GLY TRP LYS ALA PRO GLU ASP ALA GLY SEQRES 2 B 178 PRO GLN PRO GLY SER TYR GLU ILE ARG HIS TYR GLY PRO SEQRES 3 B 178 ALA LYS TRP VAL SER THR SER VAL GLU SER MET ASP TRP SEQRES 4 B 178 ASP SER ALA ILE GLN THR GLY PHE THR LYS LEU ASN SER SEQRES 5 B 178 TYR ILE GLN GLY LYS ASN GLU LYS GLU MET LYS ILE LYS SEQRES 6 B 178 MET THR ALA PRO VAL THR SER TYR VAL GLU PRO GLY SER SEQRES 7 B 178 GLY PRO PHE SER GLU SER THR ILE THR ILE SER LEU TYR SEQRES 8 B 178 ILE PRO SER GLU GLN GLN PHE ASP PRO PRO ARG PRO LEU SEQRES 9 B 178 GLU SER ASP VAL PHE ILE GLU ASP ARG ALA GLU MET THR SEQRES 10 B 178 VAL PHE VAL ARG SER PHE ASP GLY PHE SER SER ALA GLN SEQRES 11 B 178 LYS ASN GLN GLU GLN LEU LEU THR LEU ALA SER ILE LEU SEQRES 12 B 178 ARG GLU ASP GLY LYS VAL PHE ASP GLU LYS VAL TYR TYR SEQRES 13 B 178 THR ALA GLY TYR ASN SER PRO VAL LYS LEU LEU ASN ARG SEQRES 14 B 178 ASN ASN GLU VAL TRP LEU ILE GLN LYS SEQRES 1 C 170 GLY SER ASP GLN SER PHE LEU TRP ASN VAL PHE GLN ARG SEQRES 2 C 170 VAL ASP LYS ASP ARG SER GLY VAL ILE SER ASP THR GLU SEQRES 3 C 170 LEU GLN GLN ALA LEU SER ASN GLY THR TRP THR PRO PHE SEQRES 4 C 170 ASN PRO VAL THR VAL ARG SER ILE ILE SER MET PHE ASP SEQRES 5 C 170 ARG GLU ASN LYS ALA GLY VAL ASN PHE SER GLU PHE THR SEQRES 6 C 170 GLY VAL TRP LYS TYR ILE THR ASP TRP GLN ASN VAL PHE SEQRES 7 C 170 ARG THR TYR ASP ARG ASP ASN SER GLY MET ILE ASP LYS SEQRES 8 C 170 ASN GLU LEU LYS GLN ALA LEU SER GLY PHE GLY TYR ARG SEQRES 9 C 170 LEU SER ASP GLN PHE HIS ASP ILE LEU ILE ARG LYS PHE SEQRES 10 C 170 ASP ARG GLN GLY ARG GLY GLN ILE ALA PHE ASP ASP PHE SEQRES 11 C 170 ILE GLN GLY CYS ILE VAL LEU GLN ARG LEU THR ASP ILE SEQRES 12 C 170 PHE ARG ARG TYR ASP THR ASP GLN ASP GLY TRP ILE GLN SEQRES 13 C 170 VAL SER TYR GLU GLN TYR LEU SER MET VAL PHE SER ILE SEQRES 14 C 170 VAL SEQRES 1 D 170 GLY SER ASP GLN SER PHE LEU TRP ASN VAL PHE GLN ARG SEQRES 2 D 170 VAL ASP LYS ASP ARG SER GLY VAL ILE SER ASP THR GLU SEQRES 3 D 170 LEU GLN GLN ALA LEU SER ASN GLY THR TRP THR PRO PHE SEQRES 4 D 170 ASN PRO VAL THR VAL ARG SER ILE ILE SER MET PHE ASP SEQRES 5 D 170 ARG GLU ASN LYS ALA GLY VAL ASN PHE SER GLU PHE THR SEQRES 6 D 170 GLY VAL TRP LYS TYR ILE THR ASP TRP GLN ASN VAL PHE SEQRES 7 D 170 ARG THR TYR ASP ARG ASP ASN SER GLY MET ILE ASP LYS SEQRES 8 D 170 ASN GLU LEU LYS GLN ALA LEU SER GLY PHE GLY TYR ARG SEQRES 9 D 170 LEU SER ASP GLN PHE HIS ASP ILE LEU ILE ARG LYS PHE SEQRES 10 D 170 ASP ARG GLN GLY ARG GLY GLN ILE ALA PHE ASP ASP PHE SEQRES 11 D 170 ILE GLN GLY CYS ILE VAL LEU GLN ARG LEU THR ASP ILE SEQRES 12 D 170 PHE ARG ARG TYR ASP THR ASP GLN ASP GLY TRP ILE GLN SEQRES 13 D 170 VAL SER TYR GLU GLN TYR LEU SER MET VAL PHE SER ILE SEQRES 14 D 170 VAL HET CA C 201 1 HET CA C 202 1 HET CA C 203 1 HET CL C 204 1 HET CA D 201 1 HET CA D 202 1 HET CA D 203 1 HET CL D 204 1 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 5 CA 6(CA 2+) FORMUL 8 CL 2(CL 1-) FORMUL 13 HOH *307(H2 O) HELIX 1 AA1 ASP A 57 GLY A 75 1 19 HELIX 2 AA2 PRO A 112 PHE A 117 1 6 HELIX 3 AA3 SER A 147 ASP A 165 1 19 HELIX 4 AA4 ASP B 57 GLN B 74 1 18 HELIX 5 AA5 PRO B 112 PHE B 117 1 6 HELIX 6 AA6 SER B 147 ASP B 165 1 19 HELIX 7 AA7 SER C 26 ASP C 36 1 11 HELIX 8 AA8 ASP C 45 LEU C 52 1 8 HELIX 9 AA9 ASN C 61 ASP C 73 1 13 HELIX 10 AB1 ASN C 81 ASP C 103 1 23 HELIX 11 AB2 ASP C 111 PHE C 122 1 12 HELIX 12 AB3 GLN C 129 ASP C 139 1 11 HELIX 13 AB4 ALA C 147 ASP C 169 1 23 HELIX 14 AB5 TYR C 180 PHE C 188 1 9 HELIX 15 AB6 SER D 26 ASP D 36 1 11 HELIX 16 AB7 ASP D 45 LEU D 52 1 8 HELIX 17 AB8 ASN D 61 ASP D 73 1 13 HELIX 18 AB9 ASN D 81 ASP D 103 1 23 HELIX 19 AC1 ASP D 111 GLY D 123 1 13 HELIX 20 AC2 SER D 127 ASP D 139 1 13 HELIX 21 AC3 ALA D 147 ASP D 169 1 23 HELIX 22 AC4 TYR D 180 VAL D 187 1 8 SHEET 1 AA1 9 TRP A 25 LYS A 26 0 SHEET 2 AA1 9 GLU A 39 TYR A 43 -1 O HIS A 42 N LYS A 26 SHEET 3 AA1 9 MET A 135 PHE A 142 -1 O VAL A 139 N GLU A 39 SHEET 4 AA1 9 ASN A 190 ILE A 195 -1 O LEU A 194 N PHE A 138 SHEET 5 AA1 9 TYR A 174 GLY A 178 -1 N TYR A 175 O TRP A 193 SHEET 6 AA1 9 VAL A 89 GLU A 94 -1 N VAL A 89 O GLY A 178 SHEET 7 AA1 9 SER A 103 TYR A 110 -1 O THR A 104 N GLU A 94 SHEET 8 AA1 9 ALA A 46 SER A 55 -1 N VAL A 53 O ILE A 105 SHEET 9 AA1 9 VAL A 127 ARG A 132 -1 O GLU A 130 N TRP A 48 SHEET 1 AA2 9 TRP B 25 LYS B 26 0 SHEET 2 AA2 9 GLU B 39 TYR B 43 -1 O HIS B 42 N LYS B 26 SHEET 3 AA2 9 MET B 135 PHE B 142 -1 O VAL B 139 N GLU B 39 SHEET 4 AA2 9 ASN B 190 ILE B 195 -1 O LEU B 194 N PHE B 138 SHEET 5 AA2 9 TYR B 174 GLY B 178 -1 N TYR B 175 O TRP B 193 SHEET 6 AA2 9 VAL B 89 GLU B 94 -1 N VAL B 89 O GLY B 178 SHEET 7 AA2 9 SER B 103 TYR B 110 -1 O THR B 104 N GLU B 94 SHEET 8 AA2 9 ALA B 46 SER B 55 -1 N VAL B 53 O ILE B 105 SHEET 9 AA2 9 VAL B 127 ARG B 132 -1 O GLU B 130 N TRP B 48 SHEET 1 AA3 2 ILE C 43 SER C 44 0 SHEET 2 AA3 2 GLY C 79 VAL C 80 -1 O VAL C 80 N ILE C 43 SHEET 1 AA4 2 TRP C 175 SER C 179 0 SHEET 2 AA4 2 TRP D 175 SER D 179 -1 O ILE D 176 N VAL C 178 SHEET 1 AA5 2 ILE D 43 SER D 44 0 SHEET 2 AA5 2 GLY D 79 VAL D 80 -1 O VAL D 80 N ILE D 43 LINK OD1 ASP C 36 CA CA C 201 1555 1555 2.30 LINK OD2 ASP C 38 CA CA C 201 1555 1555 2.40 LINK OG SER C 40 CA CA C 201 1555 1555 2.66 LINK O VAL C 42 CA CA C 201 1555 1555 2.23 LINK OE1 GLU C 47 CA CA C 201 1555 1555 2.44 LINK OE2 GLU C 47 CA CA C 201 1555 1555 2.44 LINK OD1 ASP C 103 CA CA C 202 1555 1555 2.37 LINK OD2 ASP C 105 CA CA C 202 1555 1555 2.43 LINK OG SER C 107 CA CA C 202 1555 1555 2.42 LINK O MET C 109 CA CA C 202 1555 1555 2.32 LINK OE1 GLU C 114 CA CA C 202 1555 1555 2.34 LINK OE2 GLU C 114 CA CA C 202 1555 1555 2.50 LINK OD1 ASP C 169 CA CA C 203 1555 1555 2.56 LINK OD1 ASP C 171 CA CA C 203 1555 1555 2.84 LINK OD1 ASP C 173 CA CA C 203 1555 1555 2.52 LINK O TRP C 175 CA CA C 203 1555 1555 2.76 LINK CA CA C 203 O HOH C 343 1555 1555 3.11 LINK CA CA C 203 O HOH C 360 1555 1555 3.06 LINK OD1 ASP D 36 CA CA D 201 1555 1555 2.21 LINK OD2 ASP D 38 CA CA D 201 1555 1555 2.34 LINK OG SER D 40 CA CA D 201 1555 1555 2.68 LINK O VAL D 42 CA CA D 201 1555 1555 2.30 LINK OE1 GLU D 47 CA CA D 201 1555 1555 2.45 LINK OE2 GLU D 47 CA CA D 201 1555 1555 2.47 LINK OD1 ASP D 103 CA CA D 202 1555 1555 2.28 LINK OD2 ASP D 105 CA CA D 202 1555 1555 2.34 LINK OG SER D 107 CA CA D 202 1555 1555 2.42 LINK O MET D 109 CA CA D 202 1555 1555 2.37 LINK OE1 GLU D 114 CA CA D 202 1555 1555 2.36 LINK OE2 GLU D 114 CA CA D 202 1555 1555 2.60 LINK OD1 ASP D 169 CA CA D 203 1555 1555 3.09 LINK OD1 ASP D 171 CA CA D 203 1555 1555 2.39 LINK OD2 ASP D 171 CA CA D 203 1555 1555 3.04 LINK O TRP D 175 CA CA D 203 1555 1555 2.38 CISPEP 1 ALA A 31 GLY A 32 0 18.68 CISPEP 2 ALA A 87 PRO A 88 0 1.84 CISPEP 3 GLY A 96 SER A 97 0 -7.46 CISPEP 4 SER A 97 GLY A 98 0 -11.17 CISPEP 5 SER A 181 PRO A 182 0 3.28 CISPEP 6 GLY B 32 PRO B 33 0 -10.18 CISPEP 7 ALA B 87 PRO B 88 0 -1.98 CISPEP 8 SER B 181 PRO B 182 0 6.98 CISPEP 9 PHE C 188 SER C 189 0 3.78 CISPEP 10 ASP D 171 GLN D 172 0 -7.90 SITE 1 AC1 6 ASP C 36 ASP C 38 SER C 40 VAL C 42 SITE 2 AC1 6 GLU C 47 CL C 204 SITE 1 AC2 5 ASP C 103 ASP C 105 SER C 107 MET C 109 SITE 2 AC2 5 GLU C 114 SITE 1 AC3 5 ASP C 169 ASP C 171 ASP C 173 TRP C 175 SITE 2 AC3 5 HOH C 360 SITE 1 AC4 8 GLN B 149 GLU B 153 ASP C 38 SER C 40 SITE 2 AC4 8 VAL C 42 GLU C 47 CA C 201 HOH C 344 SITE 1 AC5 6 ASP D 36 ASP D 38 SER D 40 VAL D 42 SITE 2 AC5 6 GLU D 47 CL D 204 SITE 1 AC6 5 ASP D 103 ASP D 105 SER D 107 MET D 109 SITE 2 AC6 5 GLU D 114 SITE 1 AC7 4 ASP D 169 ASP D 171 ASP D 173 TRP D 175 SITE 1 AC8 7 GLU A 153 ASP D 38 SER D 40 VAL D 42 SITE 2 AC8 7 GLU D 47 CA D 201 HOH D 313 CRYST1 47.279 78.124 87.171 113.71 105.64 93.95 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021151 0.001460 0.007298 0.00000 SCALE2 0.000000 0.012831 0.006251 0.00000 SCALE3 0.000000 0.000000 0.013251 0.00000