HEADER TRANSFERASE 12-AUG-16 5GRR TITLE CRYSTAL STRUCTURE OF MCR-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE PHOSPHATIDYLETHANOLAMINE TRANSFERASE MCR-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 219-541; COMPND 5 SYNONYM: POLYMYXIN RESISTANCE PROTEIN MCR-1; COMPND 6 EC: 2.7.-.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: MCR1, MCR-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRHSUL2 KEYWDS ANTIBIOTIC RESISTANT, COLISTIN, SUPERBUG, PHOSPHOENTHANOLAMINE KEYWDS 2 TRANSFERASE, MCR-1, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MA,Y.ZHU,Z.YU,H.ZHANG REVDAT 2 08-NOV-23 5GRR 1 LINK REVDAT 1 04-JAN-17 5GRR 0 JRNL AUTH G.MA,Y.ZHU,Z.YU,A.AHMAD,H.ZHANG JRNL TITL HIGH RESOLUTION CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF JRNL TITL 2 MCR-1 JRNL REF SCI REP V. 6 39540 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 28000749 JRNL DOI 10.1038/SREP39540 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 52026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2715 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2837 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 159 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2530 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 492 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.063 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.064 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.065 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2653 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2446 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3615 ; 1.441 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5650 ; 0.963 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 344 ;10.446 ; 5.102 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;38.046 ;24.961 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 436 ;13.122 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;21.051 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 402 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3058 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 615 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 219 A 236 REMARK 3 ORIGIN FOR THE GROUP (A): 28.4130 12.0640 24.1850 REMARK 3 T TENSOR REMARK 3 T11: 0.1509 T22: 0.1390 REMARK 3 T33: 0.0878 T12: 0.0052 REMARK 3 T13: 0.0242 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 1.7694 L22: 6.0422 REMARK 3 L33: 6.5199 L12: -0.9924 REMARK 3 L13: -0.1018 L23: -5.8337 REMARK 3 S TENSOR REMARK 3 S11: 0.0543 S12: -0.1878 S13: 0.1697 REMARK 3 S21: 0.4674 S22: -0.1120 S23: -0.1015 REMARK 3 S31: -0.4383 S32: 0.1853 S33: 0.0576 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 237 A 404 REMARK 3 ORIGIN FOR THE GROUP (A): 44.4990 3.9880 11.0480 REMARK 3 T TENSOR REMARK 3 T11: 0.0349 T22: 0.0304 REMARK 3 T33: 0.0343 T12: -0.0178 REMARK 3 T13: -0.0171 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.4121 L22: 0.9861 REMARK 3 L33: 1.4033 L12: -0.2523 REMARK 3 L13: -0.5439 L23: 0.1189 REMARK 3 S TENSOR REMARK 3 S11: -0.0328 S12: -0.1420 S13: 0.0550 REMARK 3 S21: 0.0529 S22: 0.0192 S23: -0.1054 REMARK 3 S31: -0.0487 S32: 0.0923 S33: 0.0137 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 405 A 423 REMARK 3 ORIGIN FOR THE GROUP (A): 58.5670 -7.6920 -5.4960 REMARK 3 T TENSOR REMARK 3 T11: 0.1647 T22: 0.1518 REMARK 3 T33: 0.2297 T12: 0.0400 REMARK 3 T13: 0.0283 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 2.4931 L22: 4.3468 REMARK 3 L33: 4.5978 L12: -0.0717 REMARK 3 L13: -0.5241 L23: -0.1854 REMARK 3 S TENSOR REMARK 3 S11: -0.0997 S12: 0.1279 S13: -0.0425 REMARK 3 S21: -0.2079 S22: -0.0153 S23: -0.4155 REMARK 3 S31: -0.1563 S32: 0.4282 S33: 0.1149 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 424 A 499 REMARK 3 ORIGIN FOR THE GROUP (A): 43.2900 -1.9730 3.1390 REMARK 3 T TENSOR REMARK 3 T11: 0.0235 T22: 0.0054 REMARK 3 T33: 0.0405 T12: -0.0078 REMARK 3 T13: -0.0070 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.4006 L22: 1.0632 REMARK 3 L33: 1.7412 L12: 0.0697 REMARK 3 L13: -0.5161 L23: -0.4450 REMARK 3 S TENSOR REMARK 3 S11: -0.0569 S12: 0.0414 S13: -0.1212 REMARK 3 S21: -0.0632 S22: 0.0147 S23: -0.0167 REMARK 3 S31: 0.1187 S32: 0.0017 S33: 0.0423 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 500 A 532 REMARK 3 ORIGIN FOR THE GROUP (A): 28.2290 2.6190 12.3520 REMARK 3 T TENSOR REMARK 3 T11: 0.0528 T22: 0.0782 REMARK 3 T33: 0.0688 T12: -0.0039 REMARK 3 T13: 0.0132 T23: 0.0383 REMARK 3 L TENSOR REMARK 3 L11: 2.1363 L22: 0.7204 REMARK 3 L33: 3.0476 L12: -0.2762 REMARK 3 L13: -0.6987 L23: 0.5636 REMARK 3 S TENSOR REMARK 3 S11: -0.0981 S12: -0.0694 S13: -0.2091 REMARK 3 S21: 0.1004 S22: 0.0864 S23: 0.1605 REMARK 3 S31: 0.1475 S32: -0.3038 S33: 0.0118 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 533 A 541 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1390 5.4140 9.8450 REMARK 3 T TENSOR REMARK 3 T11: 0.1023 T22: 0.1401 REMARK 3 T33: 0.1206 T12: 0.0052 REMARK 3 T13: -0.0085 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 7.1084 L22: 7.5521 REMARK 3 L33: 2.8767 L12: -3.6157 REMARK 3 L13: 1.0915 L23: -0.3759 REMARK 3 S TENSOR REMARK 3 S11: -0.0643 S12: -0.1121 S13: 0.2063 REMARK 3 S21: -0.0808 S22: -0.0568 S23: 0.6133 REMARK 3 S31: -0.2907 S32: -0.3153 S33: 0.1211 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5GRR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1300001341. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55886 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.80900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4KAV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL, 20% (V/V) PEG 4000, REMARK 280 PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.65700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.41550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.34800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.41550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.65700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.34800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 217 REMARK 465 SER A 218 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 281 CA - CB - SG ANGL. DEV. = -10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 329 -61.51 -130.59 REMARK 500 SER A 330 -88.34 -165.66 REMARK 500 LEU A 477 -148.63 62.62 REMARK 500 HIS A 478 -155.57 -134.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1192 DISTANCE = 6.10 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 246 OE1 REMARK 620 2 GLU A 246 OE2 55.6 REMARK 620 3 THR A 285 OG1 89.1 119.2 REMARK 620 4 ASP A 465 OD2 86.4 121.6 100.2 REMARK 620 5 HIS A 466 NE2 150.8 99.5 118.5 96.8 REMARK 620 6 HOH A 703 O 105.0 76.3 66.9 162.1 80.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 281 SG REMARK 620 2 CYS A 281 SG 48.5 REMARK 620 3 CYS A 281 SG 73.4 80.7 REMARK 620 4 CYS A 291 SG 58.3 86.5 124.2 REMARK 620 5 HOH A 942 O 149.4 162.0 104.2 104.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 300 OE1 REMARK 620 2 GLU A 300 OE1 6.4 REMARK 620 3 GLU A 300 OE2 60.7 54.4 REMARK 620 4 HIS A 395 NE2 24.9 28.5 76.6 REMARK 620 5 HIS A 478 NE2 28.2 31.1 76.4 4.6 REMARK 620 6 HOH A 701 O 27.8 31.7 79.9 3.4 5.2 REMARK 620 7 HOH A 703 O 23.2 26.5 74.2 2.5 5.1 5.8 REMARK 620 8 HOH A 704 O 23.5 27.7 77.9 3.6 8.1 4.7 4.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 605 DBREF1 5GRR A 219 541 UNP MCR1_ECOLX DBREF2 5GRR A A0A0R6L508 219 541 SEQADV 5GRR GLY A 217 UNP A0A0R6L50 EXPRESSION TAG SEQADV 5GRR SER A 218 UNP A0A0R6L50 EXPRESSION TAG SEQRES 1 A 325 GLY SER THR ILE TYR HIS ALA LYS ASP ALA VAL GLN ALA SEQRES 2 A 325 THR LYS PRO ASP MET ARG LYS PRO ARG LEU VAL VAL PHE SEQRES 3 A 325 VAL VAL GLY GLU THR ALA ARG ALA ASP HIS VAL SER PHE SEQRES 4 A 325 ASN GLY TYR GLU ARG ASP THR PHE PRO GLN LEU ALA LYS SEQRES 5 A 325 ILE ASP GLY VAL THR ASN PHE SER ASN VAL THR SER CYS SEQRES 6 A 325 GLY THR SER THR ALA TYR SER VAL PRO CYS MET PHE SER SEQRES 7 A 325 TYR LEU GLY ALA ASP GLU TYR ASP VAL ASP THR ALA LYS SEQRES 8 A 325 TYR GLN GLU ASN VAL LEU ASP THR LEU ASP ARG LEU GLY SEQRES 9 A 325 VAL SER ILE LEU TRP ARG ASP ASN ASN SER ASP SER LYS SEQRES 10 A 325 GLY VAL MET ASP LYS LEU PRO LYS ALA GLN PHE ALA ASP SEQRES 11 A 325 TYR LYS SER ALA THR ASN ASN ALA ILE CYS ASN THR ASN SEQRES 12 A 325 PRO TYR ASN GLU CYS ARG ASP VAL GLY MET LEU VAL GLY SEQRES 13 A 325 LEU ASP ASP PHE VAL ALA ALA ASN ASN GLY LYS ASP MET SEQRES 14 A 325 LEU ILE MET LEU HIS GLN MET GLY ASN HIS GLY PRO ALA SEQRES 15 A 325 TYR PHE LYS ARG TYR ASP GLU LYS PHE ALA LYS PHE THR SEQRES 16 A 325 PRO VAL CYS GLU GLY ASN GLU LEU ALA LYS CYS GLU HIS SEQRES 17 A 325 GLN SER LEU ILE ASN ALA TYR ASP ASN ALA LEU LEU ALA SEQRES 18 A 325 THR ASP ASP PHE ILE ALA GLN SER ILE GLN TRP LEU GLN SEQRES 19 A 325 THR HIS SER ASN ALA TYR ASP VAL SER MET LEU TYR VAL SEQRES 20 A 325 SER ASP HIS GLY GLU SER LEU GLY GLU ASN GLY VAL TYR SEQRES 21 A 325 LEU HIS GLY MET PRO ASN ALA PHE ALA PRO LYS GLU GLN SEQRES 22 A 325 ARG SER VAL PRO ALA PHE PHE TRP THR ASP LYS GLN THR SEQRES 23 A 325 GLY ILE THR PRO MET ALA THR ASP THR VAL LEU THR HIS SEQRES 24 A 325 ASP ALA ILE THR PRO THR LEU LEU LYS LEU PHE ASP VAL SEQRES 25 A 325 THR ALA ASP LYS VAL LYS ASP ARG THR ALA PHE ILE ARG HET ZN A 601 1 HET ZN A 602 1 HET ZN A 603 1 HET GOL A 604 6 HET GOL A 605 6 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN 3(ZN 2+) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *492(H2 O) HELIX 1 AA1 ARG A 249 GLY A 257 5 9 HELIX 2 AA2 GLN A 265 ILE A 269 5 5 HELIX 3 AA3 SER A 284 PHE A 293 1 10 HELIX 4 AA4 THR A 305 GLN A 309 5 5 HELIX 5 AA5 ASN A 311 LEU A 319 1 9 HELIX 6 AA6 PRO A 340 ALA A 342 5 3 HELIX 7 AA7 ARG A 365 VAL A 371 5 7 HELIX 8 AA8 GLY A 372 ASN A 380 1 9 HELIX 9 AA9 ALA A 398 TYR A 403 5 6 HELIX 10 AB1 ASP A 404 ALA A 408 5 5 HELIX 11 AB2 GLU A 418 CYS A 422 5 5 HELIX 12 AB3 GLU A 423 THR A 451 1 29 HELIX 13 AB4 GLU A 472 GLY A 474 5 3 HELIX 14 AB5 PRO A 486 SER A 491 1 6 HELIX 15 AB6 LYS A 500 GLY A 503 5 4 HELIX 16 AB7 ALA A 517 PHE A 526 1 10 HELIX 17 AB8 ALA A 530 LYS A 534 5 5 SHEET 1 AA1 2 VAL A 227 GLN A 228 0 SHEET 2 AA1 2 VAL A 528 THR A 529 -1 O THR A 529 N VAL A 227 SHEET 1 AA2 7 VAL A 272 PHE A 275 0 SHEET 2 AA2 7 ALA A 494 THR A 498 -1 O PHE A 496 N THR A 273 SHEET 3 AA2 7 ASP A 457 SER A 464 -1 N TYR A 462 O PHE A 495 SHEET 4 AA2 7 ARG A 238 GLY A 245 1 N VAL A 243 O LEU A 461 SHEET 5 AA2 7 MET A 385 HIS A 390 1 O ILE A 387 N PHE A 242 SHEET 6 AA2 7 SER A 322 ASP A 327 1 N LEU A 324 O MET A 388 SHEET 7 AA2 7 PHE A 344 ASP A 346 1 O ALA A 345 N TRP A 325 SHEET 1 AA3 2 VAL A 278 THR A 279 0 SHEET 2 AA3 2 LEU A 513 THR A 514 1 O LEU A 513 N THR A 279 SHEET 1 AA4 2 SER A 469 LEU A 470 0 SHEET 2 AA4 2 TYR A 476 LEU A 477 -1 O LEU A 477 N SER A 469 SSBOND 1 CYS A 281 CYS A 291 1555 1555 2.04 SSBOND 2 CYS A 356 CYS A 364 1555 1555 2.05 SSBOND 3 CYS A 414 CYS A 422 1555 1555 2.03 LINK OE1 GLU A 246 ZN ZN A 601 1555 1555 2.57 LINK OE2 GLU A 246 ZN ZN A 601 1555 1555 1.97 LINK SG ACYS A 281 ZN ZN A 603 1555 1555 2.59 LINK SG BCYS A 281 ZN ZN A 603 1555 1555 2.89 LINK SG CCYS A 281 ZN ZN A 603 1555 1555 2.16 LINK OG1 THR A 285 ZN ZN A 601 1555 1555 2.03 LINK SG BCYS A 291 ZN ZN A 603 1555 1555 2.02 LINK OE1AGLU A 300 ZN ZN A 602 1555 4455 1.99 LINK OE1BGLU A 300 ZN ZN A 602 1555 4455 2.05 LINK OE2AGLU A 300 ZN ZN A 602 1555 4455 2.34 LINK NE2 HIS A 395 ZN ZN A 602 1555 1555 2.08 LINK OD2 ASP A 465 ZN ZN A 601 1555 1555 1.91 LINK NE2 HIS A 466 ZN ZN A 601 1555 1555 2.08 LINK NE2 HIS A 478 ZN ZN A 602 1555 1555 2.03 LINK ZN ZN A 601 O HOH A 703 1555 1555 2.11 LINK ZN ZN A 602 O HOH A 701 1555 4555 2.37 LINK ZN ZN A 602 O HOH A 703 1555 1555 2.19 LINK ZN ZN A 602 O HOH A 704 1555 1555 2.05 LINK ZN ZN A 603 O HOH A 942 1555 1555 2.42 CISPEP 1 GLY A 396 PRO A 397 0 3.89 CISPEP 2 THR A 411 PRO A 412 0 1.13 SITE 1 AC1 5 GLU A 246 THR A 285 ASP A 465 HIS A 466 SITE 2 AC1 5 HOH A 703 SITE 1 AC2 6 GLU A 300 HIS A 395 HIS A 478 HOH A 701 SITE 2 AC2 6 HOH A 703 HOH A 704 SITE 1 AC3 4 CYS A 281 CYS A 291 HIS A 515 HOH A 942 SITE 1 AC4 9 ASP A 317 VAL A 321 SER A 322 ILE A 323 SITE 2 AC4 9 GLN A 343 LYS A 383 HOH A 755 HOH A 837 SITE 3 AC4 9 HOH A 856 SITE 1 AC5 7 GLY A 282 THR A 283 PRO A 481 ASN A 482 SITE 2 AC5 7 ASP A 535 HOH A 929 HOH A1008 CRYST1 47.314 62.696 104.831 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021135 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015950 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009539 0.00000