HEADER IMMUNE SYSTEM 12-AUG-16 5GRU TITLE STRUCTURE OF MONO-SPECIFIC DIABODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE-BINDING PERIPLASMIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 27-392; COMPND 5 SYNONYM: MBP,MMBP,MALTODEXTRIN-BINDING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DIABODY PROTEIN; COMPND 9 CHAIN: H; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DIABODY PROTEIN; COMPND 13 CHAIN: L; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: MALE, B4034, JW3994; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 15 ORGANISM_TAXID: 10090; SOURCE 16 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS DIABODY, ANTIBODY FRAGMENT, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.H.KIM,D.H.SONG,S.J.YOUN,G.CHO,H.LEE,J.O.LEE REVDAT 3 23-OCT-24 5GRU 1 REMARK REVDAT 2 08-NOV-23 5GRU 1 REMARK REVDAT 1 12-OCT-16 5GRU 0 JRNL AUTH J.H.KIM,D.H.SONG,S.J.YOUN,J.W.KIM,G.CHO,S.C.KIM,H.LEE, JRNL AUTH 2 M.S.JIN,J.O.LEE JRNL TITL CRYSTAL STRUCTURE OF MONO- AND BI-SPECIFIC DIABODIES AND JRNL TITL 2 REDUCTION OF THEIR STRUCTURAL FLEXIBILITY BY INTRODUCTION OF JRNL TITL 3 DISULFIDE BRIDGES AT THE FV INTERFACE. JRNL REF SCI REP V. 6 34515 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27682821 JRNL DOI 10.1038/SREP34515 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 66332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.7842 - 4.7074 0.98 5024 156 0.1740 0.2058 REMARK 3 2 4.7074 - 3.7380 0.98 4924 153 0.1553 0.1985 REMARK 3 3 3.7380 - 3.2659 0.99 4916 153 0.1789 0.2055 REMARK 3 4 3.2659 - 2.9675 0.98 4847 150 0.2043 0.2526 REMARK 3 5 2.9675 - 2.7549 0.97 4797 150 0.2112 0.2268 REMARK 3 6 2.7549 - 2.5925 0.96 4750 148 0.2111 0.2554 REMARK 3 7 2.5925 - 2.4627 0.95 4703 146 0.2093 0.2650 REMARK 3 8 2.4627 - 2.3556 0.93 4595 143 0.2224 0.2489 REMARK 3 9 2.3556 - 2.2649 0.93 4518 140 0.2189 0.2945 REMARK 3 10 2.2649 - 2.1868 0.91 4511 140 0.2208 0.2772 REMARK 3 11 2.1868 - 2.1184 0.91 4423 138 0.2290 0.2894 REMARK 3 12 2.1184 - 2.0579 0.89 4393 137 0.2359 0.2573 REMARK 3 13 2.0579 - 2.0037 0.88 4294 133 0.2462 0.2688 REMARK 3 14 2.0037 - 1.9548 0.75 3637 113 0.2704 0.2991 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6502 REMARK 3 ANGLE : 0.970 8838 REMARK 3 CHIRALITY : 0.056 959 REMARK 3 PLANARITY : 0.006 1135 REMARK 3 DIHEDRAL : 13.719 3816 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5GRU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1300001334. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70116 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1EZV, 3PGF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE TRIBASIC PH 5.6, REMARK 280 27.5% PEG 12000, 0.1 M SODIUM IODIDE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 98.63350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.41150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 98.63350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.41150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 1 REMARK 465 ILE A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 4 REMARK 465 GLY A 5 REMARK 465 LYS A 6 REMARK 465 LEU A 367 REMARK 465 VAL A 368 REMARK 465 PRO A 369 REMARK 465 ARG A 370 REMARK 465 GLY A 371 REMARK 465 SER A 372 REMARK 465 ALA A 373 REMARK 465 ALA A 374 REMARK 465 ALA A 375 REMARK 465 LEU A 376 REMARK 465 GLU A 377 REMARK 465 HIS A 378 REMARK 465 HIS A 379 REMARK 465 HIS A 380 REMARK 465 HIS A 381 REMARK 465 HIS A 382 REMARK 465 HIS A 383 REMARK 465 GLU H 1 REMARK 465 SER H 242 REMARK 465 ARG H 243 REMARK 465 HIS H 244 REMARK 465 HIS H 245 REMARK 465 HIS H 246 REMARK 465 HIS H 247 REMARK 465 HIS H 248 REMARK 465 HIS H 249 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 LYS A 175 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 83 O HOH A 401 1.76 REMARK 500 OE1 GLN L 124 O HOH L 301 1.79 REMARK 500 OG1 THR A 345 O HOH A 402 1.97 REMARK 500 NH1 ARG A 98 O HOH A 403 1.98 REMARK 500 O ASP H 135 O HOH H 301 2.03 REMARK 500 NZ LYS A 239 O HOH A 404 2.04 REMARK 500 O HOH L 419 O HOH L 562 2.09 REMARK 500 O HOH A 410 O HOH A 667 2.09 REMARK 500 O HOH L 542 O HOH L 545 2.10 REMARK 500 OD1 ASN L 44 O HOH L 302 2.11 REMARK 500 O HOH A 636 O HOH A 676 2.12 REMARK 500 O HOH A 406 O HOH A 431 2.12 REMARK 500 O HOH L 420 O HOH L 451 2.12 REMARK 500 O HOH A 650 O HOH A 703 2.12 REMARK 500 O HOH L 482 O HOH L 501 2.14 REMARK 500 O HOH H 414 O HOH H 472 2.14 REMARK 500 OE1 GLU A 359 O HOH A 405 2.14 REMARK 500 O HOH L 402 O HOH L 559 2.15 REMARK 500 O THR A 366 O HOH A 406 2.15 REMARK 500 OE1 GLU A 310 O HOH A 407 2.16 REMARK 500 O HOH H 370 O HOH L 476 2.16 REMARK 500 O HOH A 612 O HOH A 706 2.17 REMARK 500 O HOH A 605 O HOH A 682 2.17 REMARK 500 OD2 ASP A 287 O HOH A 408 2.18 REMARK 500 O HOH A 549 O HOH A 649 2.18 REMARK 500 O HOH A 636 O HOH A 706 2.18 REMARK 500 OD1 ASP A 41 O HOH A 409 2.18 REMARK 500 O HOH L 559 O HOH L 563 2.18 REMARK 500 O HOH L 501 O HOH L 510 2.18 REMARK 500 O HOH A 716 O HOH L 565 2.19 REMARK 500 O HOH A 559 O HOH A 685 2.19 REMARK 500 ND2 ASN A 124 O HOH A 410 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 43 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 ARG H 98 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 55 -163.84 -112.27 REMARK 500 LEU A 122 72.41 -151.68 REMARK 500 ASN A 173 -105.01 59.35 REMARK 500 ASP A 209 -167.94 -125.71 REMARK 500 ALA H 92 160.86 173.92 REMARK 500 SER H 144 57.04 70.66 REMARK 500 ALA H 147 -168.57 -122.32 REMARK 500 THR H 185 -47.82 74.23 REMARK 500 ASN H 211 117.58 -163.01 REMARK 500 SER L 15 -8.34 84.18 REMARK 500 TYR L 33 173.29 72.06 REMARK 500 ASN L 44 -8.04 82.26 REMARK 500 TYR L 100 -68.13 -138.50 REMARK 500 SER L 151 -133.06 55.31 REMARK 500 ALA L 172 -39.01 71.82 REMARK 500 ALA L 205 -179.46 -177.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 718 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 719 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 720 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH H 508 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH H 509 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH H 510 DISTANCE = 7.25 ANGSTROMS REMARK 525 HOH H 511 DISTANCE = 8.37 ANGSTROMS REMARK 525 HOH L 575 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH L 576 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH L 577 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH L 578 DISTANCE = 6.91 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GRV RELATED DB: PDB REMARK 900 RELATED ID: 5GRW RELATED DB: PDB REMARK 900 RELATED ID: 5GRX RELATED DB: PDB REMARK 900 RELATED ID: 5GRY RELATED DB: PDB REMARK 900 RELATED ID: 5GRZ RELATED DB: PDB REMARK 900 RELATED ID: 5GS0 RELATED DB: PDB REMARK 900 RELATED ID: 5GS1 RELATED DB: PDB REMARK 900 RELATED ID: 5GS2 RELATED DB: PDB REMARK 900 RELATED ID: 5GS3 RELATED DB: PDB DBREF 5GRU A 1 366 UNP P0AEX9 MALE_ECOLI 27 392 DBREF 5GRU H 1 249 PDB 5GRU 5GRU 1 249 DBREF 5GRU L 1 228 PDB 5GRU 5GRU 1 228 SEQADV 5GRU LEU A 367 UNP P0AEX9 EXPRESSION TAG SEQADV 5GRU VAL A 368 UNP P0AEX9 EXPRESSION TAG SEQADV 5GRU PRO A 369 UNP P0AEX9 EXPRESSION TAG SEQADV 5GRU ARG A 370 UNP P0AEX9 EXPRESSION TAG SEQADV 5GRU GLY A 371 UNP P0AEX9 EXPRESSION TAG SEQADV 5GRU SER A 372 UNP P0AEX9 EXPRESSION TAG SEQADV 5GRU ALA A 373 UNP P0AEX9 EXPRESSION TAG SEQADV 5GRU ALA A 374 UNP P0AEX9 EXPRESSION TAG SEQADV 5GRU ALA A 375 UNP P0AEX9 EXPRESSION TAG SEQADV 5GRU LEU A 376 UNP P0AEX9 EXPRESSION TAG SEQADV 5GRU GLU A 377 UNP P0AEX9 EXPRESSION TAG SEQADV 5GRU HIS A 378 UNP P0AEX9 EXPRESSION TAG SEQADV 5GRU HIS A 379 UNP P0AEX9 EXPRESSION TAG SEQADV 5GRU HIS A 380 UNP P0AEX9 EXPRESSION TAG SEQADV 5GRU HIS A 381 UNP P0AEX9 EXPRESSION TAG SEQADV 5GRU HIS A 382 UNP P0AEX9 EXPRESSION TAG SEQADV 5GRU HIS A 383 UNP P0AEX9 EXPRESSION TAG SEQRES 1 A 383 LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN GLY SEQRES 2 A 383 ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS LYS SEQRES 3 A 383 PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU HIS SEQRES 4 A 383 PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA ALA SEQRES 5 A 383 THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS ASP SEQRES 6 A 383 ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA GLU SEQRES 7 A 383 ILE THR PRO ASP LYS ALA PHE GLN ASP LYS LEU TYR PRO SEQRES 8 A 383 PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU ILE SEQRES 9 A 383 ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE TYR SEQRES 10 A 383 ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP GLU SEQRES 11 A 383 GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS GLY SEQRES 12 A 383 LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR PHE SEQRES 13 A 383 THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA PHE SEQRES 14 A 383 LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS ASP VAL GLY SEQRES 15 A 383 VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE LEU SEQRES 16 A 383 VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP THR SEQRES 17 A 383 ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY GLU SEQRES 18 A 383 THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER ASN SEQRES 19 A 383 ILE ASP THR SER LYS VAL ASN TYR GLY VAL THR VAL LEU SEQRES 20 A 383 PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL GLY SEQRES 21 A 383 VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN LYS SEQRES 22 A 383 GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU THR SEQRES 23 A 383 ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO LEU SEQRES 24 A 383 GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU ALA SEQRES 25 A 383 LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA GLN SEQRES 26 A 383 LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER ALA SEQRES 27 A 383 PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA ALA SEQRES 28 A 383 SER GLY ARG GLN THR VAL ASP GLU ALA LEU LYS ASP ALA SEQRES 29 A 383 GLN THR LEU VAL PRO ARG GLY SER ALA ALA ALA LEU GLU SEQRES 30 A 383 HIS HIS HIS HIS HIS HIS SEQRES 1 H 249 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 249 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 249 PHE ASN PHE SER SER SER SER ILE HIS TRP VAL ARG GLN SEQRES 4 H 249 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA SER ILE SER SEQRES 5 H 249 SER SER SER GLY SER THR SER TYR ALA ASP SER VAL LYS SEQRES 6 H 249 GLY ARG PHE THR ILE SER ALA ASP THR SER LYS ASN THR SEQRES 7 H 249 ALA TYR LEU GLN MET ASN SER LEU THR ALA GLU ASP THR SEQRES 8 H 249 ALA VAL TYR TYR CYS ALA ARG GLY TYR TYR TYR THR GLY SEQRES 9 H 249 LEU TRP TYR PRO TYR ALA MET TYR GLU PHE GLY MET ASP SEQRES 10 H 249 TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SER GLY SEQRES 11 H 249 GLY GLY GLY SER ASP ILE GLN LEU THR GLN SER THR SER SEQRES 12 H 249 SER LEU PRO ALA SER LEU GLY ASP ARG VAL THR ILE SER SEQRES 13 H 249 CYS ARG ALA GLY GLN ASP ILE SER ASN HIS LEU ASN TRP SEQRES 14 H 249 TYR GLN GLN LYS PRO ASP GLY THR VAL LYS LEU LEU ILE SEQRES 15 H 249 TYR TYR THR SER ARG LEU HIS SER GLY VAL PRO SER ARG SEQRES 16 H 249 PHE SER GLY SER GLY SER GLY THR ASP TYR SER LEU THR SEQRES 17 H 249 ILE SER ASN LEU GLU GLN GLU ASP ILE ALA THR TYR PHE SEQRES 18 H 249 CYS GLN GLN GLY ASN THR LEU PRO TRP THR PHE GLY GLY SEQRES 19 H 249 GLY SER LYS LEU GLU ILE LYS SER ARG HIS HIS HIS HIS SEQRES 20 H 249 HIS HIS SEQRES 1 L 228 GLN VAL GLN LEU LYS GLU SER GLY PRO GLY LEU VAL ARG SEQRES 2 L 228 PRO SER GLN SER LEU SER LEU THR CYS SER VAL THR GLY SEQRES 3 L 228 TYR SER ILE THR SER GLY TYR TYR TRP ASN TRP ILE ARG SEQRES 4 L 228 GLN PHE PRO GLY ASN LYS LEU GLU TRP MET GLY TYR ILE SEQRES 5 L 228 SER TYR ASP GLY SER ASN ASN TYR ASN PRO SER LEU LYS SEQRES 6 L 228 GLY ARG ILE SER ILE THR ARG ASP THR SER LYS ASN GLN SEQRES 7 L 228 PHE PHE LEU LYS LEU ASN SER VAL THR THR ASP ASP THR SEQRES 8 L 228 ALA THR TYR TYR CYS ALA ARG ALA TYR ILE GLY PHE ALA SEQRES 9 L 228 TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SER GLY SEQRES 10 L 228 GLY GLY GLY SER ASP ILE GLN MET THR GLN SER PRO SER SEQRES 11 L 228 SER LEU SER ALA SER VAL GLY ASP ARG VAL THR ILE THR SEQRES 12 L 228 CYS ARG ALA SER GLN SER VAL SER SER ALA VAL ALA TRP SEQRES 13 L 228 TYR GLN GLN LYS PRO GLY LYS ALA PRO LYS LEU LEU ILE SEQRES 14 L 228 TYR SER ALA SER SER LEU TYR SER GLY VAL PRO SER ARG SEQRES 15 L 228 PHE SER GLY SER ARG SER GLY THR ASP PHE THR LEU THR SEQRES 16 L 228 ILE SER SER LEU GLN PRO GLU ASP PHE ALA THR TYR TYR SEQRES 17 L 228 CYS GLN GLN SER SER SER SER LEU ILE THR PHE GLY GLN SEQRES 18 L 228 GLY THR LYS VAL GLU ILE LYS FORMUL 4 HOH *809(H2 O) HELIX 1 AA1 GLY A 16 GLY A 32 1 17 HELIX 2 AA2 LYS A 42 GLY A 54 1 13 HELIX 3 AA3 HIS A 64 SER A 73 1 10 HELIX 4 AA4 ASP A 82 ASP A 87 1 6 HELIX 5 AA5 TYR A 90 ALA A 96 1 7 HELIX 6 AA6 THR A 128 GLU A 130 5 3 HELIX 7 AA7 GLU A 131 ALA A 141 1 11 HELIX 8 AA8 GLU A 153 ASP A 164 1 12 HELIX 9 AA9 ASN A 185 ASN A 201 1 17 HELIX 10 AB1 ASP A 209 LYS A 219 1 11 HELIX 11 AB2 GLY A 228 TRP A 230 5 3 HELIX 12 AB3 ALA A 231 LYS A 239 1 9 HELIX 13 AB4 ASN A 272 TYR A 283 1 12 HELIX 14 AB5 THR A 286 LYS A 297 1 12 HELIX 15 AB6 LEU A 304 ALA A 312 1 9 HELIX 16 AB7 ASP A 314 GLY A 327 1 14 HELIX 17 AB8 GLN A 335 GLY A 353 1 19 HELIX 18 AB9 THR A 356 THR A 366 1 11 HELIX 19 AC1 ASN H 28 SER H 31 5 4 HELIX 20 AC2 THR H 74 LYS H 76 5 3 HELIX 21 AC3 THR H 87 THR H 91 5 5 HELIX 22 AC4 GLU H 213 ILE H 217 5 5 HELIX 23 AC5 THR L 87 THR L 91 5 5 HELIX 24 AC6 GLY L 118 ASP L 122 5 5 HELIX 25 AC7 GLN L 200 PHE L 204 5 5 SHEET 1 AA1 6 THR A 36 GLU A 38 0 SHEET 2 AA1 6 VAL A 8 TRP A 10 1 N ILE A 9 O GLU A 38 SHEET 3 AA1 6 ILE A 59 ALA A 63 1 O PHE A 61 N TRP A 10 SHEET 4 AA1 6 PHE A 258 ILE A 266 -1 O SER A 263 N TRP A 62 SHEET 5 AA1 6 TYR A 106 GLU A 111 -1 N ILE A 108 O LEU A 262 SHEET 6 AA1 6 ALA A 301 VAL A 302 -1 O ALA A 301 N VAL A 110 SHEET 1 AA2 5 THR A 36 GLU A 38 0 SHEET 2 AA2 5 VAL A 8 TRP A 10 1 N ILE A 9 O GLU A 38 SHEET 3 AA2 5 ILE A 59 ALA A 63 1 O PHE A 61 N TRP A 10 SHEET 4 AA2 5 PHE A 258 ILE A 266 -1 O SER A 263 N TRP A 62 SHEET 5 AA2 5 GLU A 328 ILE A 329 1 O GLU A 328 N VAL A 259 SHEET 1 AA3 2 ARG A 98 TYR A 99 0 SHEET 2 AA3 2 LYS A 102 LEU A 103 -1 O LYS A 102 N TYR A 99 SHEET 1 AA4 4 SER A 145 LEU A 147 0 SHEET 2 AA4 4 THR A 222 ASN A 227 1 O ALA A 223 N SER A 145 SHEET 3 AA4 4 SER A 114 ASN A 118 -1 N ASN A 118 O ALA A 223 SHEET 4 AA4 4 TYR A 242 THR A 245 -1 O THR A 245 N LEU A 115 SHEET 1 AA5 2 LYS A 170 GLU A 172 0 SHEET 2 AA5 2 LYS A 175 ASP A 177 -1 O LYS A 175 N GLU A 172 SHEET 1 AA6 4 GLN H 3 SER H 7 0 SHEET 2 AA6 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AA6 4 THR H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA6 4 PHE H 68 ASP H 73 -1 N THR H 69 O GLN H 82 SHEET 1 AA7 6 GLY H 10 VAL H 12 0 SHEET 2 AA7 6 THR H 123 VAL H 127 1 O THR H 126 N VAL H 12 SHEET 3 AA7 6 ALA H 92 THR H 103 -1 N TYR H 94 O THR H 123 SHEET 4 AA7 6 SER H 33 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA7 6 LEU H 45 SER H 52 -1 O GLU H 46 N ARG H 38 SHEET 6 AA7 6 THR H 58 TYR H 60 -1 O SER H 59 N SER H 50 SHEET 1 AA8 4 GLY H 10 VAL H 12 0 SHEET 2 AA8 4 THR H 123 VAL H 127 1 O THR H 126 N VAL H 12 SHEET 3 AA8 4 ALA H 92 THR H 103 -1 N TYR H 94 O THR H 123 SHEET 4 AA8 4 MET H 111 TRP H 119 -1 O GLY H 115 N TYR H 100 SHEET 1 AA9 4 LEU H 138 SER H 141 0 SHEET 2 AA9 4 VAL H 153 ALA H 159 -1 O SER H 156 N SER H 141 SHEET 3 AA9 4 ASP H 204 ILE H 209 -1 O LEU H 207 N ILE H 155 SHEET 4 AA9 4 PHE H 196 SER H 201 -1 N SER H 197 O THR H 208 SHEET 1 AB1 5 ARG H 187 LEU H 188 0 SHEET 2 AB1 5 VAL H 178 TYR H 183 -1 N TYR H 183 O ARG H 187 SHEET 3 AB1 5 LEU H 167 GLN H 172 -1 N TRP H 169 O LEU H 181 SHEET 4 AB1 5 THR H 219 GLN H 224 -1 O THR H 219 N GLN H 172 SHEET 5 AB1 5 THR H 231 PHE H 232 -1 O THR H 231 N GLN H 224 SHEET 1 AB2 5 ARG H 187 LEU H 188 0 SHEET 2 AB2 5 VAL H 178 TYR H 183 -1 N TYR H 183 O ARG H 187 SHEET 3 AB2 5 LEU H 167 GLN H 172 -1 N TRP H 169 O LEU H 181 SHEET 4 AB2 5 THR H 219 GLN H 224 -1 O THR H 219 N GLN H 172 SHEET 5 AB2 5 SER H 236 LYS H 237 -1 O SER H 236 N TYR H 220 SHEET 1 AB3 4 GLN L 3 SER L 7 0 SHEET 2 AB3 4 LEU L 18 THR L 25 -1 O THR L 21 N SER L 7 SHEET 3 AB3 4 GLN L 78 LEU L 83 -1 O LEU L 83 N LEU L 18 SHEET 4 AB3 4 ILE L 68 ASP L 73 -1 N THR L 71 O PHE L 80 SHEET 1 AB4 6 LEU L 11 VAL L 12 0 SHEET 2 AB4 6 THR L 110 VAL L 114 1 O THR L 113 N VAL L 12 SHEET 3 AB4 6 ALA L 92 ALA L 99 -1 N TYR L 94 O THR L 110 SHEET 4 AB4 6 TYR L 34 GLN L 40 -1 N ILE L 38 O TYR L 95 SHEET 5 AB4 6 LEU L 46 SER L 53 -1 O ILE L 52 N TRP L 35 SHEET 6 AB4 6 ASN L 58 TYR L 60 -1 O ASN L 59 N TYR L 51 SHEET 1 AB5 4 LEU L 11 VAL L 12 0 SHEET 2 AB5 4 THR L 110 VAL L 114 1 O THR L 113 N VAL L 12 SHEET 3 AB5 4 ALA L 92 ALA L 99 -1 N TYR L 94 O THR L 110 SHEET 4 AB5 4 PHE L 103 TRP L 106 -1 O TYR L 105 N ARG L 98 SHEET 1 AB6 4 MET L 125 SER L 128 0 SHEET 2 AB6 4 VAL L 140 ALA L 146 -1 O ARG L 145 N THR L 126 SHEET 3 AB6 4 ASP L 191 ILE L 196 -1 O PHE L 192 N CYS L 144 SHEET 4 AB6 4 PHE L 183 SER L 188 -1 N SER L 188 O ASP L 191 SHEET 1 AB7 6 SER L 131 SER L 133 0 SHEET 2 AB7 6 THR L 223 GLU L 226 1 O GLU L 226 N LEU L 132 SHEET 3 AB7 6 ALA L 205 GLN L 211 -1 N ALA L 205 O VAL L 225 SHEET 4 AB7 6 VAL L 154 GLN L 159 -1 N GLN L 159 O THR L 206 SHEET 5 AB7 6 LYS L 166 TYR L 170 -1 O LYS L 166 N GLN L 158 SHEET 6 AB7 6 SER L 174 LEU L 175 -1 O SER L 174 N TYR L 170 SHEET 1 AB8 4 SER L 131 SER L 133 0 SHEET 2 AB8 4 THR L 223 GLU L 226 1 O GLU L 226 N LEU L 132 SHEET 3 AB8 4 ALA L 205 GLN L 211 -1 N ALA L 205 O VAL L 225 SHEET 4 AB8 4 THR L 218 PHE L 219 -1 O THR L 218 N GLN L 211 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 2 CYS H 157 CYS H 222 1555 1555 2.12 SSBOND 3 CYS L 22 CYS L 96 1555 1555 2.13 SSBOND 4 CYS L 144 CYS L 209 1555 1555 2.09 CISPEP 1 TYR H 107 PRO H 108 0 4.49 CISPEP 2 SER H 129 GLY H 130 0 8.17 CISPEP 3 GLY H 130 GLY H 131 0 13.41 CISPEP 4 SER H 141 THR H 142 0 -12.03 CISPEP 5 LEU H 228 PRO H 229 0 -3.23 CISPEP 6 GLY L 117 GLY L 118 0 -4.97 CISPEP 7 SER L 128 PRO L 129 0 -8.26 CRYST1 197.267 50.823 105.873 90.00 111.28 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005069 0.000000 0.001975 0.00000 SCALE2 0.000000 0.019676 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010137 0.00000