HEADER CHOLINE-BINDING PROTEIN 18-AUG-16 5GT1 TITLE CRYSTAL STRUCTURE OF CBPA FROM L. SALIVARIUS REN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLINE BINDING PROTEIN A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS SALIVARIUS STR. REN; SOURCE 3 ORGANISM_TAXID: 1194971; SOURCE 4 STRAIN: REN; SOURCE 5 GENE: LSR_01470; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS S-LAYER PROTEINS, PROBIOTICS, CHOLINE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.JIANG,F.REN REVDAT 3 08-NOV-23 5GT1 1 LINK REVDAT 2 18-OCT-17 5GT1 1 TITLE REVDAT 1 19-JUL-17 5GT1 0 JRNL AUTH R.WANG,L.JIANG,M.ZHANG,L.ZHAO,Y.HAO,H.GUO,Y.SANG,H.ZHANG, JRNL AUTH 2 F.REN JRNL TITL THE ADHESION OF LACTOBACILLUS SALIVARIUS REN TO A HUMAN JRNL TITL 2 INTESTINAL EPITHELIAL CELL LINE REQUIRES S-LAYER PROTEINS JRNL REF SCI REP V. 7 44029 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28281568 JRNL DOI 10.1038/SREP44029 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 14186 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 732 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 598 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 56.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1171 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 141 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.128 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.387 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1208 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1641 ; 1.193 ; 1.905 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 152 ; 5.583 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 62 ;36.303 ;24.516 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 167 ;13.467 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;11.398 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 171 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 970 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5GT1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1300001397. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16222 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 2B0P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M (NH4)2HPO4, 0.1 M ACETATE, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.65900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.86200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.86200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.48850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.86200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.86200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.82950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.86200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.86200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.48850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.86200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.86200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.82950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 19.65900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 339 REMARK 465 GLY A 340 REMARK 465 SER A 341 REMARK 465 SER A 342 REMARK 465 HIS A 343 REMARK 465 HIS A 344 REMARK 465 HIS A 345 REMARK 465 HIS A 346 REMARK 465 HIS A 347 REMARK 465 SER A 348 REMARK 465 SER A 349 REMARK 465 GLY A 350 REMARK 465 GLU A 351 REMARK 465 ASN A 352 REMARK 465 LEU A 353 REMARK 465 TYR A 354 REMARK 465 PHE A 355 REMARK 465 GLN A 356 REMARK 465 GLY A 357 REMARK 465 GLY A 358 REMARK 465 SER A 359 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 360 CG CD CE NZ REMARK 470 LYS A 455 CE NZ REMARK 470 LYS A 486 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C ACT A 602 O HOH A 701 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 392 12.79 57.67 REMARK 500 GLU A 428 -138.22 51.45 REMARK 500 SER A 435 -166.82 -103.46 REMARK 500 GLU A 444 -11.88 65.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 395 NE2 REMARK 620 2 ASP A 399 OD1 93.7 REMARK 620 3 HIS A 475 ND1 96.7 92.9 REMARK 620 4 HOH A 717 O 162.6 92.3 99.3 REMARK 620 5 HOH A 718 O 97.6 101.4 159.0 65.1 REMARK 620 6 HOH A 808 O 95.1 170.4 90.0 78.1 73.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 603 DBREF1 5GT1 A 360 512 UNP A0A0F7PV22_9LACO DBREF2 5GT1 A A0A0F7PV22 360 512 SEQADV 5GT1 MET A 339 UNP A0A0F7PV2 EXPRESSION TAG SEQADV 5GT1 GLY A 340 UNP A0A0F7PV2 EXPRESSION TAG SEQADV 5GT1 SER A 341 UNP A0A0F7PV2 EXPRESSION TAG SEQADV 5GT1 SER A 342 UNP A0A0F7PV2 EXPRESSION TAG SEQADV 5GT1 HIS A 343 UNP A0A0F7PV2 EXPRESSION TAG SEQADV 5GT1 HIS A 344 UNP A0A0F7PV2 EXPRESSION TAG SEQADV 5GT1 HIS A 345 UNP A0A0F7PV2 EXPRESSION TAG SEQADV 5GT1 HIS A 346 UNP A0A0F7PV2 EXPRESSION TAG SEQADV 5GT1 HIS A 347 UNP A0A0F7PV2 EXPRESSION TAG SEQADV 5GT1 SER A 348 UNP A0A0F7PV2 EXPRESSION TAG SEQADV 5GT1 SER A 349 UNP A0A0F7PV2 EXPRESSION TAG SEQADV 5GT1 GLY A 350 UNP A0A0F7PV2 EXPRESSION TAG SEQADV 5GT1 GLU A 351 UNP A0A0F7PV2 EXPRESSION TAG SEQADV 5GT1 ASN A 352 UNP A0A0F7PV2 EXPRESSION TAG SEQADV 5GT1 LEU A 353 UNP A0A0F7PV2 EXPRESSION TAG SEQADV 5GT1 TYR A 354 UNP A0A0F7PV2 EXPRESSION TAG SEQADV 5GT1 PHE A 355 UNP A0A0F7PV2 EXPRESSION TAG SEQADV 5GT1 GLN A 356 UNP A0A0F7PV2 EXPRESSION TAG SEQADV 5GT1 GLY A 357 UNP A0A0F7PV2 EXPRESSION TAG SEQADV 5GT1 GLY A 358 UNP A0A0F7PV2 EXPRESSION TAG SEQADV 5GT1 SER A 359 UNP A0A0F7PV2 EXPRESSION TAG SEQRES 1 A 174 MET GLY SER SER HIS HIS HIS HIS HIS SER SER GLY GLU SEQRES 2 A 174 ASN LEU TYR PHE GLN GLY GLY SER LYS ASP THR TRP GLY SEQRES 3 A 174 TRP PRO PHE PRO SER VAL GLY GLU GLY TYR PHE SER GLY SEQRES 4 A 174 ALA GLN LEU PHE GLY VAL ASN PRO GLY GLY GLU PHE ARG SEQRES 5 A 174 MET ASN GLY PHE HIS ASP GLY LEU ASP PHE GLY SER ILE SEQRES 6 A 174 ASP HIS PRO GLY SER ALA VAL HIS ALA VAL HIS SER GLY SEQRES 7 A 174 VAL VAL THR GLN ILE GLY TYR ILE ALA GLY LEU GLU ASN SEQRES 8 A 174 TYR VAL VAL VAL ARG SER ASP GLU TYR THR PHE VAL TYR SEQRES 9 A 174 GLN GLU ALA PHE SER ASN LYS GLY ASN ILE SER VAL LYS SEQRES 10 A 174 VAL GLY GLN GLN ILE ASN THR GLY ASP VAL ILE GLY TYR SEQRES 11 A 174 ARG ASP THR SER HIS LEU HIS LEU GLY ILE THR ARG GLU SEQRES 12 A 174 THR ASN VAL MET LYS ALA ILE ALA ASN SER PHE ASN ASN SEQRES 13 A 174 ASN GLY THR TRP LEU ASP PRO ARG ALA LEU ILE LYS ASN SEQRES 14 A 174 GLY ILE ALA ASN GLN HET ZN A 601 1 HET ACT A 602 4 HET EDO A 603 4 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN ZN 2+ FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 EDO C2 H6 O2 FORMUL 5 HOH *141(H2 O) HELIX 1 AA1 ARG A 390 ASN A 392 5 3 HELIX 2 AA2 ASN A 448 ILE A 452 5 5 HELIX 3 AA3 ASN A 483 ASN A 490 1 8 HELIX 4 AA4 ASP A 500 GLN A 512 1 13 SHEET 1 AA1 2 GLY A 382 VAL A 383 0 SHEET 2 AA1 2 PHE A 394 HIS A 395 -1 O HIS A 395 N GLY A 382 SHEET 1 AA2 6 LEU A 398 GLY A 401 0 SHEET 2 AA2 6 HIS A 473 THR A 479 -1 O LEU A 474 N PHE A 400 SHEET 3 AA2 6 THR A 439 PHE A 446 -1 N THR A 439 O THR A 479 SHEET 4 AA2 6 GLU A 428 ARG A 434 -1 N VAL A 433 O PHE A 440 SHEET 5 AA2 6 GLY A 416 ILE A 424 -1 N GLN A 420 O VAL A 432 SHEET 6 AA2 6 GLN A 459 ILE A 460 -1 O ILE A 460 N GLY A 416 SHEET 1 AA3 3 LEU A 398 GLY A 401 0 SHEET 2 AA3 3 HIS A 473 THR A 479 -1 O LEU A 474 N PHE A 400 SHEET 3 AA3 3 TRP A 498 LEU A 499 -1 O LEU A 499 N ILE A 478 SHEET 1 AA4 2 ALA A 409 HIS A 411 0 SHEET 2 AA4 2 VAL A 465 TYR A 468 -1 O GLY A 467 N VAL A 410 LINK NE2 HIS A 395 ZN ZN A 601 1555 1555 2.13 LINK OD1 ASP A 399 ZN ZN A 601 1555 1555 2.14 LINK ND1 HIS A 475 ZN ZN A 601 1555 1555 2.07 LINK ZN ZN A 601 O HOH A 717 1555 1555 2.14 LINK ZN ZN A 601 O HOH A 718 1555 1555 2.52 LINK ZN ZN A 601 O HOH A 808 1555 1555 2.29 SITE 1 AC1 6 HIS A 395 ASP A 399 HIS A 475 HOH A 717 SITE 2 AC1 6 HOH A 718 HOH A 808 SITE 1 AC2 7 PHE A 367 SER A 408 ALA A 409 HIS A 411 SITE 2 AC2 7 HOH A 701 HOH A 702 HOH A 703 SITE 1 AC3 5 GLY A 450 ILE A 452 SER A 453 HOH A 704 SITE 2 AC3 5 HOH A 706 CRYST1 95.724 95.724 39.318 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010447 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010447 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025434 0.00000