HEADER ISOMERASE 20-AUG-16 5GTE TITLE CRYSTAL STRUCTURE OF ONION LACHRYMATORY FACTOR SYNTHASE (LFS), SOLUTE- TITLE 2 FREE FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACHRYMATORY-FACTOR SYNTHASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 5.3.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALLIUM CEPA; SOURCE 3 ORGANISM_COMMON: ONION; SOURCE 4 ORGANISM_TAXID: 4679; SOURCE 5 GENE: LFS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21AI KEYWDS SRPBCC, HELIX-GRIP FOLD, CYTOSOLIC, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.TAKABE,T.ARAKAWA,N.MASAMURA,N.TSUGE,S.IMAI,S.FUSHINOBU REVDAT 4 08-NOV-23 5GTE 1 HETSYN REVDAT 3 29-JUL-20 5GTE 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 HETSYN FORMUL LINK SITE REVDAT 3 3 1 ATOM REVDAT 2 05-FEB-20 5GTE 1 JRNL REVDAT 1 23-AUG-17 5GTE 0 JRNL AUTH T.ARAKAWA,Y.SATO,M.YAMADA,J.TAKABE,Y.MORIWAKI,N.MASAMURA, JRNL AUTH 2 M.KATO,M.AOYAGI,T.KAMOI,T.TERADA,K.SHIMIZU,N.TSUGE,S.IMAI, JRNL AUTH 3 S.FUSHINOBU JRNL TITL DISSECTING THE STEREOCONTROLLED CONVERSION OF SHORT-LIVED JRNL TITL 2 SULFENIC ACID BY LACHRYMATORY FACTOR SYNTHASE JRNL REF ACS CATALYSIS V. 10 9 2020 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.9B03720 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 62844 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3213 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4502 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 231 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4870 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 352 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.484 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5042 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4645 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6824 ; 1.852 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10771 ; 0.863 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 602 ; 6.872 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 230 ;42.747 ;25.130 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 883 ;16.093 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;21.794 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 737 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5561 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1137 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2414 ; 2.308 ; 2.690 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2413 ; 2.299 ; 2.689 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3011 ; 3.095 ; 4.017 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3012 ; 3.095 ; 4.018 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2628 ; 3.842 ; 3.174 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2625 ; 3.841 ; 3.171 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3807 ; 5.770 ; 4.564 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6210 ; 8.311 ;23.273 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6065 ; 8.215 ;22.955 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5GTE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1300001414. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.0 - 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR, REMARK 200 LIQUID NITROGEN COOLING REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66057 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5GTF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, MES, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.56150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.25200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.32800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.25200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.56150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.32800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 3 REMARK 465 ASN A 4 REMARK 465 PRO A 5 REMARK 465 GLY A 6 REMARK 465 ALA A 7 REMARK 465 PRO A 8 REMARK 465 ALA A 9 REMARK 465 VAL A 10 REMARK 465 VAL A 11 REMARK 465 ALA A 12 REMARK 465 ASP A 13 REMARK 465 SER A 14 REMARK 465 ALA A 15 REMARK 465 ASN A 16 REMARK 465 GLY A 17 REMARK 465 ALA A 18 REMARK 465 ARG A 19 REMARK 465 ALA A 169 REMARK 465 HIS A 170 REMARK 465 HIS A 171 REMARK 465 HIS A 172 REMARK 465 HIS A 173 REMARK 465 HIS A 174 REMARK 465 HIS A 175 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 LEU B 3 REMARK 465 ASN B 4 REMARK 465 PRO B 5 REMARK 465 GLY B 6 REMARK 465 ALA B 7 REMARK 465 PRO B 8 REMARK 465 ALA B 9 REMARK 465 VAL B 10 REMARK 465 VAL B 11 REMARK 465 ALA B 12 REMARK 465 ASP B 13 REMARK 465 SER B 14 REMARK 465 ALA B 15 REMARK 465 ASN B 16 REMARK 465 GLY B 17 REMARK 465 ALA B 18 REMARK 465 ARG B 19 REMARK 465 ALA B 169 REMARK 465 HIS B 170 REMARK 465 HIS B 171 REMARK 465 HIS B 172 REMARK 465 HIS B 173 REMARK 465 HIS B 174 REMARK 465 HIS B 175 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 LEU C 3 REMARK 465 ASN C 4 REMARK 465 PRO C 5 REMARK 465 GLY C 6 REMARK 465 ALA C 7 REMARK 465 PRO C 8 REMARK 465 ALA C 9 REMARK 465 VAL C 10 REMARK 465 VAL C 11 REMARK 465 ALA C 12 REMARK 465 ASP C 13 REMARK 465 SER C 14 REMARK 465 ALA C 15 REMARK 465 ASN C 16 REMARK 465 HIS C 170 REMARK 465 HIS C 171 REMARK 465 HIS C 172 REMARK 465 HIS C 173 REMARK 465 HIS C 174 REMARK 465 HIS C 175 REMARK 465 MET D 1 REMARK 465 GLU D 2 REMARK 465 LEU D 3 REMARK 465 ASN D 4 REMARK 465 PRO D 5 REMARK 465 GLY D 6 REMARK 465 ALA D 7 REMARK 465 PRO D 8 REMARK 465 ALA D 9 REMARK 465 VAL D 10 REMARK 465 VAL D 11 REMARK 465 ALA D 12 REMARK 465 ASP D 13 REMARK 465 SER D 14 REMARK 465 ALA D 15 REMARK 465 ASN D 16 REMARK 465 HIS D 170 REMARK 465 HIS D 171 REMARK 465 HIS D 172 REMARK 465 HIS D 173 REMARK 465 HIS D 174 REMARK 465 HIS D 175 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 367 O HOH B 392 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 71 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 71 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG C 19 131.93 63.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 405 DISTANCE = 6.10 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GTF RELATED DB: PDB REMARK 900 RELATED ID: 5GTG RELATED DB: PDB DBREF 5GTE A 1 169 UNP P59082 LFS_ALLCE 1 169 DBREF 5GTE B 1 169 UNP P59082 LFS_ALLCE 1 169 DBREF 5GTE C 1 169 UNP P59082 LFS_ALLCE 1 169 DBREF 5GTE D 1 169 UNP P59082 LFS_ALLCE 1 169 SEQADV 5GTE HIS A 170 UNP P59082 EXPRESSION TAG SEQADV 5GTE HIS A 171 UNP P59082 EXPRESSION TAG SEQADV 5GTE HIS A 172 UNP P59082 EXPRESSION TAG SEQADV 5GTE HIS A 173 UNP P59082 EXPRESSION TAG SEQADV 5GTE HIS A 174 UNP P59082 EXPRESSION TAG SEQADV 5GTE HIS A 175 UNP P59082 EXPRESSION TAG SEQADV 5GTE HIS B 170 UNP P59082 EXPRESSION TAG SEQADV 5GTE HIS B 171 UNP P59082 EXPRESSION TAG SEQADV 5GTE HIS B 172 UNP P59082 EXPRESSION TAG SEQADV 5GTE HIS B 173 UNP P59082 EXPRESSION TAG SEQADV 5GTE HIS B 174 UNP P59082 EXPRESSION TAG SEQADV 5GTE HIS B 175 UNP P59082 EXPRESSION TAG SEQADV 5GTE HIS C 170 UNP P59082 EXPRESSION TAG SEQADV 5GTE HIS C 171 UNP P59082 EXPRESSION TAG SEQADV 5GTE HIS C 172 UNP P59082 EXPRESSION TAG SEQADV 5GTE HIS C 173 UNP P59082 EXPRESSION TAG SEQADV 5GTE HIS C 174 UNP P59082 EXPRESSION TAG SEQADV 5GTE HIS C 175 UNP P59082 EXPRESSION TAG SEQADV 5GTE HIS D 170 UNP P59082 EXPRESSION TAG SEQADV 5GTE HIS D 171 UNP P59082 EXPRESSION TAG SEQADV 5GTE HIS D 172 UNP P59082 EXPRESSION TAG SEQADV 5GTE HIS D 173 UNP P59082 EXPRESSION TAG SEQADV 5GTE HIS D 174 UNP P59082 EXPRESSION TAG SEQADV 5GTE HIS D 175 UNP P59082 EXPRESSION TAG SEQRES 1 A 175 MET GLU LEU ASN PRO GLY ALA PRO ALA VAL VAL ALA ASP SEQRES 2 A 175 SER ALA ASN GLY ALA ARG LYS TRP SER GLY LYS VAL HIS SEQRES 3 A 175 ALA LEU LEU PRO ASN THR LYS PRO GLU GLN ALA TRP THR SEQRES 4 A 175 LEU LEU LYS ASP PHE ILE ASN LEU HIS LYS VAL MET PRO SEQRES 5 A 175 SER LEU SER VAL CYS GLU LEU VAL GLU GLY GLU ALA ASN SEQRES 6 A 175 VAL VAL GLY CYS VAL ARG TYR VAL LYS GLY ILE MET HIS SEQRES 7 A 175 PRO ILE GLU GLU GLU PHE TRP ALA LYS GLU LYS LEU VAL SEQRES 8 A 175 ALA LEU ASP ASN LYS ASN MET SER TYR SER TYR ILE PHE SEQRES 9 A 175 THR GLU CYS PHE THR GLY TYR GLU ASP TYR THR ALA THR SEQRES 10 A 175 MET GLN ILE VAL GLU GLY PRO GLU HIS LYS GLY SER ARG SEQRES 11 A 175 PHE ASP TRP SER PHE GLN CYS LYS TYR ILE GLU GLY MET SEQRES 12 A 175 THR GLU SER ALA PHE THR GLU ILE LEU GLN HIS TRP ALA SEQRES 13 A 175 THR GLU ILE GLY GLN LYS ILE GLU GLU VAL CYS SER ALA SEQRES 14 A 175 HIS HIS HIS HIS HIS HIS SEQRES 1 B 175 MET GLU LEU ASN PRO GLY ALA PRO ALA VAL VAL ALA ASP SEQRES 2 B 175 SER ALA ASN GLY ALA ARG LYS TRP SER GLY LYS VAL HIS SEQRES 3 B 175 ALA LEU LEU PRO ASN THR LYS PRO GLU GLN ALA TRP THR SEQRES 4 B 175 LEU LEU LYS ASP PHE ILE ASN LEU HIS LYS VAL MET PRO SEQRES 5 B 175 SER LEU SER VAL CYS GLU LEU VAL GLU GLY GLU ALA ASN SEQRES 6 B 175 VAL VAL GLY CYS VAL ARG TYR VAL LYS GLY ILE MET HIS SEQRES 7 B 175 PRO ILE GLU GLU GLU PHE TRP ALA LYS GLU LYS LEU VAL SEQRES 8 B 175 ALA LEU ASP ASN LYS ASN MET SER TYR SER TYR ILE PHE SEQRES 9 B 175 THR GLU CYS PHE THR GLY TYR GLU ASP TYR THR ALA THR SEQRES 10 B 175 MET GLN ILE VAL GLU GLY PRO GLU HIS LYS GLY SER ARG SEQRES 11 B 175 PHE ASP TRP SER PHE GLN CYS LYS TYR ILE GLU GLY MET SEQRES 12 B 175 THR GLU SER ALA PHE THR GLU ILE LEU GLN HIS TRP ALA SEQRES 13 B 175 THR GLU ILE GLY GLN LYS ILE GLU GLU VAL CYS SER ALA SEQRES 14 B 175 HIS HIS HIS HIS HIS HIS SEQRES 1 C 175 MET GLU LEU ASN PRO GLY ALA PRO ALA VAL VAL ALA ASP SEQRES 2 C 175 SER ALA ASN GLY ALA ARG LYS TRP SER GLY LYS VAL HIS SEQRES 3 C 175 ALA LEU LEU PRO ASN THR LYS PRO GLU GLN ALA TRP THR SEQRES 4 C 175 LEU LEU LYS ASP PHE ILE ASN LEU HIS LYS VAL MET PRO SEQRES 5 C 175 SER LEU SER VAL CYS GLU LEU VAL GLU GLY GLU ALA ASN SEQRES 6 C 175 VAL VAL GLY CYS VAL ARG TYR VAL LYS GLY ILE MET HIS SEQRES 7 C 175 PRO ILE GLU GLU GLU PHE TRP ALA LYS GLU LYS LEU VAL SEQRES 8 C 175 ALA LEU ASP ASN LYS ASN MET SER TYR SER TYR ILE PHE SEQRES 9 C 175 THR GLU CYS PHE THR GLY TYR GLU ASP TYR THR ALA THR SEQRES 10 C 175 MET GLN ILE VAL GLU GLY PRO GLU HIS LYS GLY SER ARG SEQRES 11 C 175 PHE ASP TRP SER PHE GLN CYS LYS TYR ILE GLU GLY MET SEQRES 12 C 175 THR GLU SER ALA PHE THR GLU ILE LEU GLN HIS TRP ALA SEQRES 13 C 175 THR GLU ILE GLY GLN LYS ILE GLU GLU VAL CYS SER ALA SEQRES 14 C 175 HIS HIS HIS HIS HIS HIS SEQRES 1 D 175 MET GLU LEU ASN PRO GLY ALA PRO ALA VAL VAL ALA ASP SEQRES 2 D 175 SER ALA ASN GLY ALA ARG LYS TRP SER GLY LYS VAL HIS SEQRES 3 D 175 ALA LEU LEU PRO ASN THR LYS PRO GLU GLN ALA TRP THR SEQRES 4 D 175 LEU LEU LYS ASP PHE ILE ASN LEU HIS LYS VAL MET PRO SEQRES 5 D 175 SER LEU SER VAL CYS GLU LEU VAL GLU GLY GLU ALA ASN SEQRES 6 D 175 VAL VAL GLY CYS VAL ARG TYR VAL LYS GLY ILE MET HIS SEQRES 7 D 175 PRO ILE GLU GLU GLU PHE TRP ALA LYS GLU LYS LEU VAL SEQRES 8 D 175 ALA LEU ASP ASN LYS ASN MET SER TYR SER TYR ILE PHE SEQRES 9 D 175 THR GLU CYS PHE THR GLY TYR GLU ASP TYR THR ALA THR SEQRES 10 D 175 MET GLN ILE VAL GLU GLY PRO GLU HIS LYS GLY SER ARG SEQRES 11 D 175 PHE ASP TRP SER PHE GLN CYS LYS TYR ILE GLU GLY MET SEQRES 12 D 175 THR GLU SER ALA PHE THR GLU ILE LEU GLN HIS TRP ALA SEQRES 13 D 175 THR GLU ILE GLY GLN LYS ILE GLU GLU VAL CYS SER ALA SEQRES 14 D 175 HIS HIS HIS HIS HIS HIS HET GLC E 1 11 HET GLC E 2 12 HET SO4 A 202 5 HET SO4 B 201 5 HET SO4 C 201 5 HET SO4 D 201 5 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 5 GLC 2(C6 H12 O6) FORMUL 6 SO4 4(O4 S 2-) FORMUL 10 HOH *352(H2 O) HELIX 1 AA1 LYS A 33 LYS A 42 1 10 HELIX 2 AA2 ASP A 43 VAL A 50 5 8 HELIX 3 AA3 PRO A 124 LYS A 127 5 4 HELIX 4 AA4 THR A 144 SER A 168 1 25 HELIX 5 AA5 LYS B 33 LYS B 42 1 10 HELIX 6 AA6 ASP B 43 VAL B 50 5 8 HELIX 7 AA7 PRO B 124 LYS B 127 5 4 HELIX 8 AA8 THR B 144 SER B 168 1 25 HELIX 9 AA9 LYS C 33 LYS C 42 1 10 HELIX 10 AB1 ASP C 43 VAL C 50 5 8 HELIX 11 AB2 PRO C 124 LYS C 127 5 4 HELIX 12 AB3 THR C 144 ALA C 169 1 26 HELIX 13 AB4 LYS D 33 LYS D 42 1 10 HELIX 14 AB5 ASP D 43 VAL D 50 5 8 HELIX 15 AB6 PRO D 124 LYS D 127 5 4 HELIX 16 AB7 THR D 144 ALA D 169 1 26 SHEET 1 AA1 7 TRP A 21 LEU A 29 0 SHEET 2 AA1 7 SER A 129 CYS A 137 -1 O TRP A 133 N VAL A 25 SHEET 3 AA1 7 THR A 115 GLU A 122 -1 N GLN A 119 O ASP A 132 SHEET 4 AA1 7 SER A 99 CYS A 107 -1 N TYR A 102 O ALA A 116 SHEET 5 AA1 7 GLU A 82 ASP A 94 -1 N ASP A 94 O SER A 99 SHEET 6 AA1 7 VAL A 70 MET A 77 -1 N MET A 77 O GLU A 82 SHEET 7 AA1 7 LEU A 54 GLU A 61 -1 N GLU A 58 O TYR A 72 SHEET 1 AA2 2 TYR A 111 GLU A 112 0 SHEET 2 AA2 2 TYR A 139 ILE A 140 -1 O TYR A 139 N GLU A 112 SHEET 1 AA3 7 TRP B 21 LEU B 29 0 SHEET 2 AA3 7 SER B 129 CYS B 137 -1 O SER B 129 N LEU B 29 SHEET 3 AA3 7 THR B 115 GLU B 122 -1 N GLN B 119 O ASP B 132 SHEET 4 AA3 7 SER B 99 CYS B 107 -1 N TYR B 102 O ALA B 116 SHEET 5 AA3 7 GLU B 82 ASP B 94 -1 N ASP B 94 O SER B 99 SHEET 6 AA3 7 VAL B 70 MET B 77 -1 N MET B 77 O GLU B 82 SHEET 7 AA3 7 LEU B 54 GLU B 61 -1 N GLU B 58 O TYR B 72 SHEET 1 AA4 2 TYR B 111 GLU B 112 0 SHEET 2 AA4 2 TYR B 139 ILE B 140 -1 O TYR B 139 N GLU B 112 SHEET 1 AA5 7 TRP C 21 LEU C 29 0 SHEET 2 AA5 7 SER C 129 CYS C 137 -1 O CYS C 137 N TRP C 21 SHEET 3 AA5 7 THR C 115 GLU C 122 -1 N THR C 115 O GLN C 136 SHEET 4 AA5 7 SER C 99 CYS C 107 -1 N TYR C 100 O MET C 118 SHEET 5 AA5 7 GLU C 82 ASP C 94 -1 N ASP C 94 O SER C 99 SHEET 6 AA5 7 VAL C 70 MET C 77 -1 N GLY C 75 O PHE C 84 SHEET 7 AA5 7 LEU C 54 GLU C 61 -1 N GLU C 58 O TYR C 72 SHEET 1 AA6 2 TYR C 111 GLU C 112 0 SHEET 2 AA6 2 TYR C 139 ILE C 140 -1 O TYR C 139 N GLU C 112 SHEET 1 AA7 7 TRP D 21 LEU D 29 0 SHEET 2 AA7 7 SER D 129 CYS D 137 -1 O SER D 129 N LEU D 29 SHEET 3 AA7 7 THR D 115 GLU D 122 -1 N VAL D 121 O ARG D 130 SHEET 4 AA7 7 SER D 99 CYS D 107 -1 N TYR D 102 O ALA D 116 SHEET 5 AA7 7 GLU D 82 ASP D 94 -1 N ASP D 94 O SER D 99 SHEET 6 AA7 7 VAL D 70 MET D 77 -1 N MET D 77 O GLU D 82 SHEET 7 AA7 7 LEU D 54 GLU D 61 -1 N VAL D 60 O VAL D 70 SHEET 1 AA8 2 TYR D 111 GLU D 112 0 SHEET 2 AA8 2 TYR D 139 ILE D 140 -1 O TYR D 139 N GLU D 112 LINK C1 GLC E 1 O1 GLC E 2 1555 1555 1.42 CISPEP 1 HIS A 78 PRO A 79 0 9.09 CISPEP 2 HIS B 78 PRO B 79 0 9.29 CISPEP 3 HIS C 78 PRO C 79 0 6.91 CISPEP 4 HIS D 78 PRO D 79 0 9.00 CRYST1 65.123 118.656 124.504 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015356 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008032 0.00000