data_5GUN # _entry.id 5GUN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5GUN pdb_00005gun 10.2210/pdb5gun/pdb WWPDB D_1300001481 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-08-30 2 'Structure model' 1 1 2017-09-20 3 'Structure model' 1 2 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_struct_conn_angle 7 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.journal_volume' 3 2 'Structure model' '_citation.page_first' 4 2 'Structure model' '_citation.page_last' 5 2 'Structure model' '_citation.pdbx_database_id_PubMed' 6 2 'Structure model' '_citation_author.name' 7 3 'Structure model' '_database_2.pdbx_DOI' 8 3 'Structure model' '_database_2.pdbx_database_accession' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_symmetry' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 23 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 24 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 25 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 26 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 27 3 'Structure model' '_pdbx_struct_conn_angle.value' 28 3 'Structure model' '_struct_conn.pdbx_dist_value' 29 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 30 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 31 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 32 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 33 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 34 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 35 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 36 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 37 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 38 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 39 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 40 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 41 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 42 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 43 3 'Structure model' '_struct_conn.ptnr2_symmetry' # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2017-08-30 _pdbx_database_PDB_obs_spr.pdb_id 5GUN _pdbx_database_PDB_obs_spr.replace_pdb_id 4RZN _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5GUN _pdbx_database_status.recvd_initial_deposition_date 2016-08-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Satange, R.B.' 1 ? 'Kao, Y.F.' 2 ? 'Hou, M.H.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Proc. Natl. Acad. Sci. U.S.A.' _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 114 _citation.language ? _citation.page_first 9535 _citation.page_last 9540 _citation.title 'Parity-dependent hairpin configurations of repetitive DNA sequence promote slippage associated with DNA expansion' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.1708691114 _citation.pdbx_database_id_PubMed 28827328 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huang, T.Y.' 1 ? primary 'Chang, C.K.' 2 ? primary 'Kao, Y.F.' 3 ? primary 'Chin, C.H.' 4 ? primary 'Ni, C.W.' 5 ? primary 'Hsu, H.Y.' 6 ? primary 'Hu, N.J.' 7 ? primary 'Hsieh, L.C.' 8 ? primary 'Chou, S.H.' 9 ? primary 'Lee, I.R.' 10 ? primary 'Hou, M.H.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*TP*GP*GP*AP*AP*TP*GP*GP*AP*AP*C)-3') ; 3751.466 6 ? ? ? ? 2 non-polymer syn 'COBALT (II) ION' 58.933 8 ? ? ? ? 3 water nat water 18.015 14 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DT)(DG)(DG)(DA)(DA)(DT)(DG)(DG)(DA)(DA)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GTGGAATGGAAC _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COBALT (II) ION' CO 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DG n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DG n 1 9 DG n 1 10 DA n 1 11 DA n 1 12 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DA 10 10 10 DA DA A . n A 1 11 DA 11 11 11 DA DA A . n A 1 12 DC 12 12 12 DC DC A . n B 1 1 DG 1 13 13 DG DG B . n B 1 2 DT 2 14 14 DT DT B . n B 1 3 DG 3 15 15 DG DG B . n B 1 4 DG 4 16 16 DG DG B . n B 1 5 DA 5 17 17 DA DA B . n B 1 6 DA 6 18 18 DA DA B . n B 1 7 DT 7 19 19 DT DT B . n B 1 8 DG 8 20 20 DG DG B . n B 1 9 DG 9 21 21 DG DG B . n B 1 10 DA 10 22 22 DA DA B . n B 1 11 DA 11 23 23 DA DA B . n B 1 12 DC 12 24 24 DC DC B . n C 1 1 DG 1 25 25 DG DG C . n C 1 2 DT 2 26 26 DT DT C . n C 1 3 DG 3 27 27 DG DG C . n C 1 4 DG 4 28 28 DG DG C . n C 1 5 DA 5 29 29 DA DA C . n C 1 6 DA 6 30 30 DA DA C . n C 1 7 DT 7 31 31 DT DT C . n C 1 8 DG 8 32 32 DG DG C . n C 1 9 DG 9 33 33 DG DG C . n C 1 10 DA 10 34 34 DA DA C . n C 1 11 DA 11 35 35 DA DA C . n C 1 12 DC 12 36 36 DC DC C . n D 1 1 DG 1 37 37 DG DG D . n D 1 2 DT 2 38 38 DT DT D . n D 1 3 DG 3 39 39 DG DG D . n D 1 4 DG 4 40 40 DG DG D . n D 1 5 DA 5 41 41 DA DA D . n D 1 6 DA 6 42 42 DA DA D . n D 1 7 DT 7 43 43 DT DT D . n D 1 8 DG 8 44 44 DG DG D . n D 1 9 DG 9 45 45 DG DG D . n D 1 10 DA 10 46 46 DA DA D . n D 1 11 DA 11 47 47 DA DA D . n D 1 12 DC 12 48 48 DC DC D . n E 1 1 DG 1 49 49 DG DG E . n E 1 2 DT 2 50 50 DT DT E . n E 1 3 DG 3 51 51 DG DG E . n E 1 4 DG 4 52 52 DG DG E . n E 1 5 DA 5 53 53 DA DA E . n E 1 6 DA 6 54 54 DA DA E . n E 1 7 DT 7 55 55 DT DT E . n E 1 8 DG 8 56 56 DG DG E . n E 1 9 DG 9 57 57 DG DG E . n E 1 10 DA 10 58 58 DA DA E . n E 1 11 DA 11 59 59 DA DA E . n E 1 12 DC 12 60 60 DC DC E . n F 1 1 DG 1 61 61 DG DG F . n F 1 2 DT 2 62 62 DT DT F . n F 1 3 DG 3 63 63 DG DG F . n F 1 4 DG 4 64 64 DG DG F . n F 1 5 DA 5 65 65 DA DA F . n F 1 6 DA 6 66 66 DA DA F . n F 1 7 DT 7 67 67 DT DT F . n F 1 8 DG 8 68 68 DG DG F . n F 1 9 DG 9 69 69 DG DG F . n F 1 10 DA 10 70 70 DA DA F . n F 1 11 DA 11 71 71 DA DA F . n F 1 12 DC 12 72 72 DC DC F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 CO 1 101 73 CO CO A . H 2 CO 1 102 76 CO CO A . I 2 CO 1 101 80 CO CO B . J 2 CO 1 101 74 CO CO C . K 2 CO 1 101 78 CO CO D . L 2 CO 1 101 75 CO CO E . M 2 CO 1 101 77 CO CO F . N 2 CO 1 102 79 CO CO F . O 3 HOH 1 201 1 HOH HOH B . O 3 HOH 2 202 3 HOH HOH B . O 3 HOH 3 203 26 HOH HOH B . O 3 HOH 4 204 12 HOH HOH B . P 3 HOH 1 201 2 HOH HOH C . P 3 HOH 2 202 23 HOH HOH C . Q 3 HOH 1 201 14 HOH HOH D . Q 3 HOH 2 202 20 HOH HOH D . Q 3 HOH 3 203 6 HOH HOH D . Q 3 HOH 4 204 13 HOH HOH D . Q 3 HOH 5 205 7 HOH HOH D . R 3 HOH 1 201 11 HOH HOH E . S 3 HOH 1 201 27 HOH HOH F . S 3 HOH 2 202 8 HOH HOH F . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.10.1_2155: ???)' 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 # _cell.entry_id 5GUN _cell.length_a 61.993 _cell.length_b 61.993 _cell.length_c 208.727 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 72 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GUN _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5GUN _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.57 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 52.18 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '50mM sodium cacodylate, 10mM magnesium chloride, 5mM cobalt(II) chloride, 1mM spermine, 8% MPD' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2011-07-13 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'LN2-Cooled Fixed-Exit Double Crystal Si(111) Monochromator' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.8563 1.0 2 0.9189 1.0 3 0.9195 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSRRC BEAMLINE BL13B1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list '0.8563, 0.9189, 0.9195' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL13B1 _diffrn_source.pdbx_synchrotron_site NSRRC # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5GUN _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.58 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7937 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 33 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.58 _reflns_shell.d_res_low 2.67 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 98 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5GUN _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 7894 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 37.419 _refine.ls_d_res_high 2.588 _refine.ls_percent_reflns_obs 97.96 _refine.ls_R_factor_obs 0.2449 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2429 _refine.ls_R_factor_R_free 0.2875 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.62 _refine.ls_number_reflns_R_free 365 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.32 _refine.pdbx_overall_phase_error 29.95 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1500 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 14 _refine_hist.number_atoms_total 1522 _refine_hist.d_res_high 2.588 _refine_hist.d_res_low 37.419 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.004 ? ? 1692 'X-RAY DIFFRACTION' ? f_angle_d 0.519 ? ? 2610 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 33.131 ? ? 696 'X-RAY DIFFRACTION' ? f_chiral_restr 0.025 ? ? 282 'X-RAY DIFFRACTION' ? f_plane_restr 0.002 ? ? 72 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.5878 2.9621 2339 0.3103 95.00 0.3404 . . 110 . . . . 'X-RAY DIFFRACTION' . 2.9621 3.7314 2484 0.2153 99.00 0.2866 . . 136 . . . . 'X-RAY DIFFRACTION' . 3.7314 37.4230 2706 0.2438 99.00 0.2722 . . 119 . . . . # _struct.entry_id 5GUN _struct.title 'Crystal structure of d(GTGGAATGGAAC)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5GUN _struct_keywords.text '(GGA) motif, DNA expansion in SCA31 patient, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 3 ? P N N 3 ? Q N N 3 ? R N N 3 ? S N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5GUN _struct_ref.pdbx_db_accession 5GUN _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5GUN A 1 ? 12 ? 5GUN 1 ? 12 ? 1 12 2 1 5GUN B 1 ? 12 ? 5GUN 13 ? 24 ? 13 24 3 1 5GUN C 1 ? 12 ? 5GUN 25 ? 36 ? 25 36 4 1 5GUN D 1 ? 12 ? 5GUN 37 ? 48 ? 37 48 5 1 5GUN E 1 ? 12 ? 5GUN 49 ? 60 ? 49 60 6 1 5GUN F 1 ? 12 ? 5GUN 61 ? 72 ? 61 72 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 3 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,G,H,I,O 2 1 C,D,J,K,P,Q 3 1 E,F,L,M,N,R,S # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 1 O6 ? ? ? 1_555 L CO . CO ? ? A DG 1 E CO 101 1_655 ? ? ? ? ? ? ? 2.684 ? ? metalc2 metalc ? ? A DG 4 O6 ? ? ? 1_555 H CO . CO ? ? A DG 4 A CO 102 1_555 ? ? ? ? ? ? ? 2.557 ? ? metalc3 metalc ? ? A DG 9 O6 ? ? ? 1_555 G CO . CO ? ? A DG 9 A CO 101 1_555 ? ? ? ? ? ? ? 2.598 ? ? metalc4 metalc ? ? G CO . CO ? ? ? 1_555 O HOH . O ? ? A CO 101 B HOH 202 1_555 ? ? ? ? ? ? ? 2.222 ? ? metalc5 metalc ? ? H CO . CO ? ? ? 1_555 B DG 9 O6 ? ? A CO 102 B DG 21 1_555 ? ? ? ? ? ? ? 2.559 ? ? metalc6 metalc ? ? B DA 11 OP2 ? ? ? 1_555 I CO . CO ? ? B DA 23 B CO 101 1_555 ? ? ? ? ? ? ? 2.611 ? ? metalc7 metalc ? ? I CO . CO ? ? ? 1_555 Q HOH . O ? ? B CO 101 D HOH 204 1_555 ? ? ? ? ? ? ? 2.566 ? ? metalc8 metalc ? ? C DG 9 O6 ? ? ? 1_555 J CO . CO ? ? C DG 33 C CO 101 1_555 ? ? ? ? ? ? ? 2.377 ? ? metalc9 metalc ? ? J CO . CO ? ? ? 1_555 D DG 4 O6 ? ? C CO 101 D DG 40 1_555 ? ? ? ? ? ? ? 2.428 ? ? metalc10 metalc ? ? J CO . CO ? ? ? 1_555 Q HOH . O ? ? C CO 101 D HOH 202 1_555 ? ? ? ? ? ? ? 2.275 ? ? metalc11 metalc ? ? D DG 9 O6 ? ? ? 1_555 K CO . CO ? ? D DG 45 D CO 101 1_555 ? ? ? ? ? ? ? 2.692 ? ? metalc12 metalc ? ? E DG 1 O6 ? ? ? 1_555 L CO . CO ? ? E DG 49 E CO 101 1_555 ? ? ? ? ? ? ? 2.348 ? ? metalc13 metalc ? ? F DG 1 O6 ? ? ? 1_555 N CO . CO ? ? F DG 61 F CO 102 1_555 ? ? ? ? ? ? ? 2.235 ? ? metalc14 metalc ? ? F DG 4 O6 ? ? ? 1_555 M CO . CO ? ? F DG 64 F CO 101 1_555 ? ? ? ? ? ? ? 2.270 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 12 N3 ? ? A DG 1 B DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 12 O2 ? ? A DG 1 B DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 12 N4 ? ? A DG 1 B DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 11 N1 ? ? A DT 2 B DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 11 N6 ? ? A DT 2 B DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DA 10 N7 ? ? A DG 3 B DA 22 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog7 hydrog ? ? A DG 3 N3 ? ? ? 1_555 B DA 10 N6 ? ? A DG 3 B DA 22 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog8 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DG 8 N3 ? ? A DA 5 B DG 20 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog9 hydrog ? ? A DA 5 N7 ? ? ? 1_555 B DG 8 N2 ? ? A DA 5 B DG 20 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog10 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DA 5 N7 ? ? A DG 8 B DA 17 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog15 hydrog ? ? A DG 8 N3 ? ? ? 1_555 B DA 5 N6 ? ? A DG 8 B DA 17 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog16 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DG 3 N3 ? ? A DA 10 B DG 15 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog17 hydrog ? ? A DA 10 N7 ? ? ? 1_555 B DG 3 N2 ? ? A DA 10 B DG 15 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog18 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 11 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 11 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DG 1 N1 ? ? ? 1_555 D DC 12 N3 ? ? C DG 25 D DC 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DG 1 N2 ? ? ? 1_555 D DC 12 O2 ? ? C DG 25 D DC 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DG 1 O6 ? ? ? 1_555 D DC 12 N4 ? ? C DG 25 D DC 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DT 2 N3 ? ? ? 1_555 D DA 11 N1 ? ? C DT 26 D DA 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DT 2 O4 ? ? ? 1_555 D DA 11 N6 ? ? C DT 26 D DA 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DG 3 N2 ? ? ? 1_555 D DA 10 N7 ? ? C DG 27 D DA 46 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog29 hydrog ? ? C DG 3 N3 ? ? ? 1_555 D DA 10 N6 ? ? C DG 27 D DA 46 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog30 hydrog ? ? C DA 5 N6 ? ? ? 1_555 D DG 8 N3 ? ? C DA 29 D DG 44 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog31 hydrog ? ? C DA 5 N7 ? ? ? 1_555 D DG 8 N2 ? ? C DA 29 D DG 44 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog32 hydrog ? ? C DA 6 N1 ? ? ? 1_555 D DT 7 N3 ? ? C DA 30 D DT 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DA 6 N6 ? ? ? 1_555 D DT 7 O4 ? ? C DA 30 D DT 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DT 7 N3 ? ? ? 1_555 D DA 6 N1 ? ? C DT 31 D DA 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DT 7 O4 ? ? ? 1_555 D DA 6 N6 ? ? C DT 31 D DA 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DG 8 N2 ? ? ? 1_555 D DA 5 N7 ? ? C DG 32 D DA 41 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog37 hydrog ? ? C DG 8 N3 ? ? ? 1_555 D DA 5 N6 ? ? C DG 32 D DA 41 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog38 hydrog ? ? C DA 10 N6 ? ? ? 1_555 D DG 3 N3 ? ? C DA 34 D DG 39 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog39 hydrog ? ? C DA 10 N7 ? ? ? 1_555 D DG 3 N2 ? ? C DA 34 D DG 39 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog40 hydrog ? ? C DA 11 N1 ? ? ? 1_555 D DT 2 N3 ? ? C DA 35 D DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DA 11 N6 ? ? ? 1_555 D DT 2 O4 ? ? C DA 35 D DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DC 12 N3 ? ? ? 1_555 D DG 1 N1 ? ? C DC 36 D DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DC 12 N4 ? ? ? 1_555 D DG 1 O6 ? ? C DC 36 D DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DC 12 O2 ? ? ? 1_555 D DG 1 N2 ? ? C DC 36 D DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? E DG 1 N1 ? ? ? 1_555 F DC 12 N3 ? ? E DG 49 F DC 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? E DG 1 N2 ? ? ? 1_555 F DC 12 O2 ? ? E DG 49 F DC 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? E DG 1 O6 ? ? ? 1_555 F DC 12 N4 ? ? E DG 49 F DC 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? E DT 2 N3 ? ? ? 1_555 F DA 11 N1 ? ? E DT 50 F DA 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? E DT 2 O4 ? ? ? 1_555 F DA 11 N6 ? ? E DT 50 F DA 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? E DG 3 N2 ? ? ? 1_555 F DA 10 N7 ? ? E DG 51 F DA 70 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog51 hydrog ? ? E DG 3 N3 ? ? ? 1_555 F DA 10 N6 ? ? E DG 51 F DA 70 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog52 hydrog ? ? E DA 5 N6 ? ? ? 1_555 F DG 8 N3 ? ? E DA 53 F DG 68 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog53 hydrog ? ? E DA 5 N7 ? ? ? 1_555 F DG 8 N2 ? ? E DA 53 F DG 68 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog54 hydrog ? ? E DA 6 N1 ? ? ? 1_555 F DT 7 N3 ? ? E DA 54 F DT 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? E DA 6 N6 ? ? ? 1_555 F DT 7 O4 ? ? E DA 54 F DT 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? E DT 7 N3 ? ? ? 1_555 F DA 6 N1 ? ? E DT 55 F DA 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? E DT 7 O4 ? ? ? 1_555 F DA 6 N6 ? ? E DT 55 F DA 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? E DG 8 N2 ? ? ? 1_555 F DA 5 N7 ? ? E DG 56 F DA 65 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog59 hydrog ? ? E DG 8 N3 ? ? ? 1_555 F DA 5 N6 ? ? E DG 56 F DA 65 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog60 hydrog ? ? E DA 10 N6 ? ? ? 1_555 F DG 3 N3 ? ? E DA 58 F DG 63 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog61 hydrog ? ? E DA 10 N7 ? ? ? 1_555 F DG 3 N2 ? ? E DA 58 F DG 63 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog62 hydrog ? ? E DA 11 N1 ? ? ? 1_555 F DT 2 N3 ? ? E DA 59 F DT 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? E DA 11 N6 ? ? ? 1_555 F DT 2 O4 ? ? E DA 59 F DT 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? E DC 12 N3 ? ? ? 1_555 F DG 1 N1 ? ? E DC 60 F DG 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? E DC 12 N4 ? ? ? 1_555 F DG 1 O6 ? ? E DC 60 F DG 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? E DC 12 O2 ? ? ? 1_555 F DG 1 N2 ? ? E DC 60 F DG 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 1 ? A DG 1 ? 1_555 CO ? L CO . ? E CO 101 ? 1_655 O6 ? E DG 1 ? E DG 49 ? 1_555 58.4 ? 2 O6 ? A DG 4 ? A DG 4 ? 1_555 CO ? H CO . ? A CO 102 ? 1_555 O6 ? B DG 9 ? B DG 21 ? 1_555 69.6 ? 3 O6 ? A DG 9 ? A DG 9 ? 1_555 CO ? G CO . ? A CO 101 ? 1_555 O ? O HOH . ? B HOH 202 ? 1_555 85.4 ? 4 OP2 ? B DA 11 ? B DA 23 ? 1_555 CO ? I CO . ? B CO 101 ? 1_555 O ? Q HOH . ? D HOH 204 ? 1_555 135.5 ? 5 O6 ? C DG 9 ? C DG 33 ? 1_555 CO ? J CO . ? C CO 101 ? 1_555 O6 ? D DG 4 ? D DG 40 ? 1_555 84.8 ? 6 O6 ? C DG 9 ? C DG 33 ? 1_555 CO ? J CO . ? C CO 101 ? 1_555 O ? Q HOH . ? D HOH 202 ? 1_555 114.0 ? 7 O6 ? D DG 4 ? D DG 40 ? 1_555 CO ? J CO . ? C CO 101 ? 1_555 O ? Q HOH . ? D HOH 202 ? 1_555 68.5 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CO 101 ? 3 'binding site for residue CO A 101' AC2 Software A CO 102 ? 2 'binding site for residue CO A 102' AC3 Software B CO 101 ? 2 'binding site for residue CO B 101' AC4 Software C CO 101 ? 3 'binding site for residue CO C 101' AC5 Software D CO 101 ? 2 'binding site for residue CO D 101' AC6 Software E CO 101 ? 2 'binding site for residue CO E 101' AC7 Software F CO 101 ? 2 'binding site for residue CO F 101' AC8 Software F CO 102 ? 2 'binding site for residue CO F 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 DG A 9 ? DG A 9 . ? 1_555 ? 2 AC1 3 DG B 4 ? DG B 16 . ? 1_555 ? 3 AC1 3 HOH O . ? HOH B 202 . ? 1_555 ? 4 AC2 2 DG A 4 ? DG A 4 . ? 1_555 ? 5 AC2 2 DG B 9 ? DG B 21 . ? 1_555 ? 6 AC3 2 DA B 11 ? DA B 23 . ? 1_555 ? 7 AC3 2 HOH Q . ? HOH D 204 . ? 1_555 ? 8 AC4 3 DG C 9 ? DG C 33 . ? 1_555 ? 9 AC4 3 DG D 4 ? DG D 40 . ? 1_555 ? 10 AC4 3 HOH Q . ? HOH D 202 . ? 1_555 ? 11 AC5 2 DG C 4 ? DG C 28 . ? 1_555 ? 12 AC5 2 DG D 9 ? DG D 45 . ? 1_555 ? 13 AC6 2 DG A 1 ? DG A 1 . ? 1_455 ? 14 AC6 2 DG E 1 ? DG E 49 . ? 1_555 ? 15 AC7 2 DG E 9 ? DG E 57 . ? 1_555 ? 16 AC7 2 DG F 4 ? DG F 64 . ? 1_555 ? 17 AC8 2 DG C 1 ? DG C 25 . ? 1_555 ? 18 AC8 2 DG F 1 ? DG F 61 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N1 B DG 15 ? ? O B HOH 201 ? ? 1.95 2 1 O6 E DG 52 ? ? O E HOH 201 ? ? 2.09 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 0.8633 -12.9574 -0.1204 0.4309 0.7774 0.7712 0.1473 -0.1187 0.1532 1.6428 0.6922 0.5190 -0.8776 0.8351 -0.3571 0.0312 0.2829 -0.2607 0.8247 0.5362 0.2670 -0.2079 -0.2093 -0.1493 'X-RAY DIFFRACTION' 2 ? refined -0.6725 -13.5944 0.4397 0.1836 0.6003 1.0201 0.1276 -0.4251 0.1427 2.3185 0.2845 0.4829 -0.7734 0.8464 -0.2970 -0.1899 0.3089 -0.0435 0.7677 0.3025 0.8257 -0.3202 -0.2727 -0.2056 'X-RAY DIFFRACTION' 3 ? refined 21.5830 -7.6818 10.8155 0.1873 0.9008 0.8151 -0.1265 0.2733 0.1807 1.6020 0.0803 1.0028 0.1783 0.6329 0.2575 0.0582 -0.3613 -0.3312 0.0840 0.6141 -0.2699 -0.3450 -0.2998 0.1783 'X-RAY DIFFRACTION' 4 ? refined 23.2246 -8.4083 10.7110 0.3356 0.8556 0.5777 -0.1983 0.0461 0.2444 3.0535 0.8186 0.0917 0.9961 -0.1157 0.1441 0.2276 -0.7291 -0.0618 -0.1843 0.3548 -0.5550 -0.1774 -0.2470 0.6108 'X-RAY DIFFRACTION' 5 ? refined -20.6216 -21.7992 11.4351 0.2949 1.1067 0.9812 -0.0803 -0.1040 0.1282 2.7144 0.2339 0.0850 -0.3163 0.2605 -0.1083 -0.3265 0.1366 0.0881 0.1879 0.0948 -0.1804 0.1733 -0.4097 0.3245 'X-RAY DIFFRACTION' 6 ? refined -18.9936 -22.4879 10.4675 0.2230 1.1264 1.0714 -0.1015 -0.2205 -0.1225 2.5331 0.0348 0.0534 -0.4165 0.3669 -0.0571 -0.1855 -0.2423 0.0409 -0.1954 0.3635 0.4248 -0.1498 -0.2121 -0.1555 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 12 ;chain 'A' and (resid 1 through 12 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 13 B 24 ;chain 'B' and (resid 13 through 24 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 25 C 36 ;chain 'C' and (resid 25 through 36 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 D 37 D 48 ;chain 'D' and (resid 37 through 48 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 E 49 E 60 ;chain 'E' and (resid 49 through 60 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 F 61 F 72 ;chain 'F' and (resid 61 through 72 ) ; ? ? ? ? ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CO CO CO N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5GUN 'double helix' 5GUN 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 12 1_555 -0.007 0.081 -0.740 -19.421 12.710 4.786 1 A_DG1:DC24_B A 1 ? B 24 ? 19 1 1 A DT 2 1_555 B DA 11 1_555 0.189 -0.228 0.127 12.600 12.996 3.220 2 A_DT2:DA23_B A 2 ? B 23 ? 20 1 1 A DG 3 1_555 B DA 10 1_555 6.576 -4.365 1.266 29.833 -7.404 13.694 3 A_DG3:DA22_B A 3 ? B 22 ? 11 9 1 A DA 5 1_555 B DG 8 1_555 -6.498 -4.551 1.089 -28.404 -16.564 6.917 4 A_DA5:DG20_B A 5 ? B 20 ? 11 9 1 A DA 6 1_555 B DT 7 1_555 -0.271 -0.058 0.045 -10.723 1.636 2.639 5 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 0.702 0.049 0.263 8.074 3.165 3.651 6 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DG 8 1_555 B DA 5 1_555 6.123 -4.022 1.224 26.493 -7.865 13.494 7 A_DG8:DA17_B A 8 ? B 17 ? 11 9 1 A DA 10 1_555 B DG 3 1_555 -6.306 -4.433 1.059 -30.458 -15.922 5.976 8 A_DA10:DG15_B A 10 ? B 15 ? 11 9 1 A DA 11 1_555 B DT 2 1_555 -0.200 -0.372 0.139 -12.623 5.766 3.094 9 A_DA11:DT14_B A 11 ? B 14 ? 20 1 1 A DC 12 1_555 B DG 1 1_555 0.287 -0.297 0.606 -2.265 1.238 -3.693 10 A_DC12:DG13_B A 12 ? B 13 ? 19 1 1 D DA 10 1_555 C DG 3 1_555 -6.470 -4.050 1.003 -35.952 -2.080 13.932 11 D_DA46:DG27_C D 46 ? C 27 ? 11 9 1 D DA 11 1_555 C DT 2 1_555 -0.404 -0.363 0.066 -10.493 14.436 -0.249 12 D_DA47:DT26_C D 47 ? C 26 ? 20 1 1 D DC 12 1_555 C DG 1 1_555 0.092 -0.111 -0.352 16.363 11.272 -1.564 13 D_DC48:DG25_C D 48 ? C 25 ? 19 1 1 F DG 1 1_555 E DC 12 1_555 -0.244 0.352 -0.635 -29.927 3.757 11.399 14 F_DG61:DC60_E F 61 ? E 60 ? 19 1 1 F DT 2 1_555 E DA 11 1_555 0.775 -0.203 0.073 6.506 22.801 -2.740 15 F_DT62:DA59_E F 62 ? E 59 ? 20 1 1 F DG 3 1_555 E DA 10 1_555 6.408 -3.911 1.240 32.643 -5.678 21.130 16 F_DG63:DA58_E F 63 ? E 58 ? 11 9 1 C DA 5 1_555 D DG 8 1_555 -6.288 -4.099 0.975 -31.950 -11.977 9.895 17 C_DA29:DG44_D C 29 ? D 44 ? 11 9 1 C DA 6 1_555 D DT 7 1_555 -0.426 -0.147 0.115 -11.716 -1.257 3.364 18 C_DA30:DT43_D C 30 ? D 43 ? 20 1 1 C DT 7 1_555 D DA 6 1_555 1.003 0.086 0.200 5.954 3.201 6.084 19 C_DT31:DA42_D C 31 ? D 42 ? 20 1 1 C DG 8 1_555 D DA 5 1_555 6.355 -4.137 0.958 27.240 -4.638 13.641 20 C_DG32:DA41_D C 32 ? D 41 ? 11 9 1 C DA 10 1_555 D DG 3 1_555 -6.347 -4.233 1.250 -30.655 -16.062 12.698 21 C_DA34:DG39_D C 34 ? D 39 ? 11 9 1 C DA 11 1_555 D DT 2 1_555 -1.014 -0.264 0.074 -13.117 2.988 -0.738 22 C_DA35:DT38_D C 35 ? D 38 ? 20 1 1 C DC 12 1_555 D DG 1 1_555 0.223 -0.078 0.209 0.901 4.797 -4.587 23 C_DC36:DG37_D C 36 ? D 37 ? 19 1 1 E DG 1 1_555 F DC 12 1_555 -0.018 0.221 -0.276 -23.247 -0.037 10.583 24 E_DG49:DC72_F E 49 ? F 72 ? 19 1 1 E DT 2 1_555 F DA 11 1_555 0.105 -0.048 0.075 11.322 22.845 0.398 25 E_DT50:DA71_F E 50 ? F 71 ? 20 1 1 E DG 3 1_555 F DA 10 1_555 6.669 -4.394 1.014 36.487 -1.360 18.130 26 E_DG51:DA70_F E 51 ? F 70 ? 11 9 1 E DA 5 1_555 F DG 8 1_555 -6.127 -4.054 0.745 -34.437 -11.636 2.628 27 E_DA53:DG68_F E 53 ? F 68 ? 11 9 1 E DA 6 1_555 F DT 7 1_555 -0.977 0.313 0.315 -11.295 0.813 1.403 28 E_DA54:DT67_F E 54 ? F 67 ? 20 1 1 E DT 7 1_555 F DA 6 1_555 0.746 -0.463 0.415 8.747 4.935 1.575 29 E_DT55:DA66_F E 55 ? F 66 ? 20 1 1 E DG 8 1_555 F DA 5 1_555 6.289 -3.858 0.901 30.670 -15.636 14.561 30 E_DG56:DA65_F E 56 ? F 65 ? 11 9 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 12 1_555 A DT 2 1_555 B DA 11 1_555 -0.516 -0.067 2.715 -7.241 6.352 23.127 -1.763 -0.642 2.643 15.035 17.139 25.027 1 AA_DG1DT2:DA23DC24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DT 2 1_555 B DA 11 1_555 A DG 3 1_555 B DA 10 1_555 0.627 1.128 3.027 2.569 9.894 53.663 0.656 -0.535 3.197 10.848 -2.817 54.557 2 AA_DT2DG3:DA22DA23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DA 5 1_555 B DG 8 1_555 A DA 6 1_555 B DT 7 1_555 -0.261 1.857 3.191 -2.549 4.841 62.947 1.559 0.137 3.319 4.626 2.436 63.160 3 AA_DA5DA6:DT19DG20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.052 -0.131 2.808 -2.049 2.050 32.085 -0.549 -0.406 2.786 3.700 3.697 32.212 4 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DG 8 1_555 B DA 5 1_555 0.784 1.434 3.054 1.407 7.545 52.840 1.135 -0.787 3.234 8.428 -1.572 53.355 5 AA_DT7DG8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DA 10 1_555 B DG 3 1_555 A DA 11 1_555 B DT 2 1_555 -0.220 1.586 3.147 0.266 3.541 56.310 1.483 0.248 3.232 3.748 -0.282 56.412 6 AA_DA10DA11:DT14DG15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DA 11 1_555 B DT 2 1_555 A DC 12 1_555 B DG 1 1_555 0.317 -0.573 3.213 -4.023 -2.711 31.101 -0.558 -1.324 3.185 -5.017 7.446 31.468 7 AA_DA11DC12:DG13DT14_BB A 11 ? B 14 ? A 12 ? B 13 ? 1 D DA 10 1_555 C DG 3 1_555 D DA 11 1_555 C DT 2 1_555 -0.929 1.163 2.802 -0.881 6.449 49.985 0.961 1.036 2.936 7.595 1.038 50.380 8 DD_DA46DA47:DT26DG27_CC D 46 ? C 27 ? D 47 ? C 26 ? 1 D DA 11 1_555 C DT 2 1_555 D DC 12 1_555 C DG 1 1_555 0.023 -0.246 2.826 4.506 6.934 25.270 -2.097 0.966 2.631 15.335 -9.965 26.567 9 DD_DA47DC48:DG25DT26_CC D 47 ? C 26 ? D 48 ? C 25 ? 1 D DC 12 1_555 C DG 1 1_555 F DG 1 1_555 E DC 12 1_555 -0.172 1.458 3.991 0.477 1.450 -83.325 -1.139 -0.115 3.970 -1.091 0.358 -83.336 10 DF_DC48DG61:DC60DG25_EC D 48 ? C 25 ? F 61 ? E 60 ? 1 F DG 1 1_555 E DC 12 1_555 F DT 2 1_555 E DA 11 1_555 -0.957 -0.271 2.622 -1.782 7.945 27.190 -2.020 1.624 2.500 16.439 3.686 28.361 11 FF_DG61DT62:DA59DC60_EE F 61 ? E 60 ? F 62 ? E 59 ? 1 F DT 2 1_555 E DA 11 1_555 F DG 3 1_555 E DA 10 1_555 1.151 1.211 2.750 2.213 10.257 49.661 0.775 -1.207 2.974 12.057 -2.601 50.688 12 FF_DT62DG63:DA58DA59_EE F 62 ? E 59 ? F 63 ? E 58 ? 1 C DA 5 1_555 D DG 8 1_555 C DA 6 1_555 D DT 7 1_555 -0.567 1.976 3.261 -0.566 0.621 60.830 1.921 0.533 3.284 0.614 0.559 60.835 13 CC_DA29DA30:DT43DG44_DD C 29 ? D 44 ? C 30 ? D 43 ? 1 C DA 6 1_555 D DT 7 1_555 C DT 7 1_555 D DA 6 1_555 0.249 -0.061 2.809 -0.957 3.183 33.238 -0.558 -0.569 2.784 5.547 1.668 33.399 14 CC_DA30DT31:DA42DT43_DD C 30 ? D 43 ? C 31 ? D 42 ? 1 C DT 7 1_555 D DA 6 1_555 C DG 8 1_555 D DA 5 1_555 0.550 1.429 2.929 2.045 5.210 50.431 1.331 -0.510 3.071 6.093 -2.391 50.721 15 CC_DT31DG32:DA41DA42_DD C 31 ? D 42 ? C 32 ? D 41 ? 1 C DA 10 1_555 D DG 3 1_555 C DA 11 1_555 D DT 2 1_555 -0.733 1.692 3.216 -1.992 5.964 54.712 1.472 0.673 3.392 6.465 2.160 55.045 16 CC_DA34DA35:DT38DG39_DD C 34 ? D 39 ? C 35 ? D 38 ? 1 C DA 11 1_555 D DT 2 1_555 C DC 12 1_555 D DG 1 1_555 -0.206 -0.320 3.025 -1.435 0.534 34.681 -0.613 0.142 3.026 0.895 2.406 34.714 17 CC_DA35DC36:DG37DT38_DD C 35 ? D 38 ? C 36 ? D 37 ? 1 E DG 1 1_555 F DC 12 1_555 E DT 2 1_555 F DA 11 1_555 -0.810 -0.106 2.661 -0.233 8.967 22.367 -2.586 1.880 2.444 22.013 0.572 24.077 18 EE_DG49DT50:DA71DC72_FF E 49 ? F 72 ? E 50 ? F 71 ? 1 E DT 2 1_555 F DA 11 1_555 E DG 3 1_555 F DA 10 1_555 0.841 1.155 2.759 1.329 5.869 54.099 0.955 -0.850 2.879 6.431 -1.456 54.408 19 EE_DT50DG51:DA70DA71_FF E 50 ? F 71 ? E 51 ? F 70 ? 1 E DA 5 1_555 F DG 8 1_555 E DA 6 1_555 F DT 7 1_555 -0.370 1.803 3.040 -2.236 -1.445 54.712 2.040 0.278 3.007 -1.571 2.431 54.772 20 EE_DA53DA54:DT67DG68_FF E 53 ? F 68 ? E 54 ? F 67 ? 1 E DA 6 1_555 F DT 7 1_555 E DT 7 1_555 F DA 6 1_555 -0.222 -0.479 2.931 -0.366 -0.334 36.321 -0.727 0.310 2.937 -0.536 0.587 36.324 21 EE_DA54DT55:DA66DT67_FF E 54 ? F 67 ? E 55 ? F 66 ? 1 E DT 7 1_555 F DA 6 1_555 E DG 8 1_555 F DA 5 1_555 0.770 1.292 3.102 1.306 0.200 55.552 1.375 -0.754 3.122 0.215 -1.401 55.567 22 EE_DT55DG56:DA65DA66_FF E 55 ? F 66 ? E 56 ? F 65 ? # _atom_sites.entry_id 5GUN _atom_sites.fract_transf_matrix[1][1] 0.016131 _atom_sites.fract_transf_matrix[1][2] 0.009313 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018626 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004791 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO N O P # loop_