HEADER TRANSFERASE 14-SEP-16 5GWX TITLE CRYSTAL STRUCTURE OF GLYCINE SARCOSINE N-METHYLTRANSFERASE FROM TITLE 2 METHANOHALOPHILUS PORTUCALENSIS IN COMPLEX WITH S-ADENOSYLMETHIONINE TITLE 3 AND SARCOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCINE SARCOSINE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOHALOPHILUS PORTUCALENSIS FDF-1; SOURCE 3 ORGANISM_TAXID: 523843; SOURCE 4 GENE: GSMT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASES, SAM, ADOMET-MTASE, KEYWDS 2 CLASS I MONOMETHYLATION, GLYCINE, SARCOSINE RATE-LIMITING ENZYME, KEYWDS 3 BETAINE BIOSYNTHESIS BETAINE-MEDIATED FEEDBACK INHIBITION, KEYWDS 4 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.R.LEE,T.S.LIN,S.J.LAI,M.S.LIU,M.C.LAI,N.L.CHAN REVDAT 3 08-NOV-23 5GWX 1 REMARK REVDAT 2 18-JAN-17 5GWX 1 JRNL REMARK REVDAT 1 23-NOV-16 5GWX 0 JRNL AUTH Y.R.LEE,T.S.LIN,S.J.LAI,M.S.LIU,M.C.LAI,N.L.CHAN JRNL TITL STRUCTURAL ANALYSIS OF GLYCINE SARCOSINE N-METHYLTRANSFERASE JRNL TITL 2 FROM METHANOHALOPHILUS PORTUCALENSIS REVEALS MECHANISTIC JRNL TITL 3 INSIGHTS INTO THE REGULATION OF METHYLTRANSFERASE ACTIVITY. JRNL REF SCI REP V. 6 38071 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27934872 JRNL DOI 10.1038/SREP38071 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 20698 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1039 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.1974 - 4.2144 0.97 2919 157 0.1673 0.1983 REMARK 3 2 4.2144 - 3.3467 0.98 2850 152 0.1566 0.1680 REMARK 3 3 3.3467 - 2.9241 0.99 2819 147 0.1712 0.2041 REMARK 3 4 2.9241 - 2.6569 0.99 2799 149 0.1880 0.2353 REMARK 3 5 2.6569 - 2.4666 0.99 2787 140 0.1911 0.2325 REMARK 3 6 2.4666 - 2.3212 0.99 2786 162 0.1973 0.2572 REMARK 3 7 2.3212 - 2.2050 0.96 2699 132 0.2092 0.2475 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2078 REMARK 3 ANGLE : 0.815 2804 REMARK 3 CHIRALITY : 0.050 295 REMARK 3 PLANARITY : 0.004 364 REMARK 3 DIHEDRAL : 12.091 1198 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5439 -17.9462 -31.5789 REMARK 3 T TENSOR REMARK 3 T11: 0.3779 T22: 0.4100 REMARK 3 T33: 0.4276 T12: -0.0024 REMARK 3 T13: 0.0178 T23: -0.1456 REMARK 3 L TENSOR REMARK 3 L11: 2.8496 L22: 7.0120 REMARK 3 L33: 6.3910 L12: -1.5407 REMARK 3 L13: 3.6150 L23: 0.0013 REMARK 3 S TENSOR REMARK 3 S11: -0.2361 S12: 0.1576 S13: 0.8589 REMARK 3 S21: 0.0412 S22: 0.4149 S23: -1.0089 REMARK 3 S31: -0.1891 S32: 0.7190 S33: -0.0636 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5299 -14.3202 -22.0901 REMARK 3 T TENSOR REMARK 3 T11: 0.2854 T22: 0.3600 REMARK 3 T33: 0.5777 T12: -0.0366 REMARK 3 T13: -0.0757 T23: -0.0262 REMARK 3 L TENSOR REMARK 3 L11: 9.5951 L22: 1.8662 REMARK 3 L33: 4.7713 L12: -1.3150 REMARK 3 L13: -6.2745 L23: 0.5367 REMARK 3 S TENSOR REMARK 3 S11: 0.0072 S12: 0.3066 S13: -0.5966 REMARK 3 S21: -0.2367 S22: -0.0197 S23: 0.4954 REMARK 3 S31: 0.3933 S32: -1.0402 S33: 0.0243 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1061 -7.2086 -18.0521 REMARK 3 T TENSOR REMARK 3 T11: 0.2807 T22: 0.2225 REMARK 3 T33: 0.2559 T12: -0.0019 REMARK 3 T13: -0.0009 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 4.2763 L22: 3.1836 REMARK 3 L33: 3.8201 L12: 0.7114 REMARK 3 L13: -1.2011 L23: -1.4528 REMARK 3 S TENSOR REMARK 3 S11: -0.1438 S12: -0.1067 S13: 0.0372 REMARK 3 S21: -0.0558 S22: 0.0411 S23: 0.1247 REMARK 3 S31: -0.0393 S32: 0.0490 S33: 0.0809 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9897 -20.1220 -10.7110 REMARK 3 T TENSOR REMARK 3 T11: 0.2525 T22: 0.3032 REMARK 3 T33: 0.2145 T12: -0.0129 REMARK 3 T13: 0.0304 T23: 0.0314 REMARK 3 L TENSOR REMARK 3 L11: 3.8104 L22: 7.8694 REMARK 3 L33: 4.5929 L12: -1.2488 REMARK 3 L13: 0.4376 L23: 2.8979 REMARK 3 S TENSOR REMARK 3 S11: -0.1037 S12: -0.1516 S13: -0.0300 REMARK 3 S21: 0.3376 S22: 0.0758 S23: -0.0395 REMARK 3 S31: 0.1444 S32: 0.1457 S33: 0.0322 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 169 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0109 -34.2875 -27.6762 REMARK 3 T TENSOR REMARK 3 T11: 0.2247 T22: 0.3701 REMARK 3 T33: 0.3514 T12: -0.0174 REMARK 3 T13: 0.0364 T23: -0.0690 REMARK 3 L TENSOR REMARK 3 L11: 9.1577 L22: 5.4064 REMARK 3 L33: 8.8346 L12: -3.2853 REMARK 3 L13: 7.3643 L23: -3.0560 REMARK 3 S TENSOR REMARK 3 S11: 0.3901 S12: 0.1616 S13: -0.5029 REMARK 3 S21: -0.3324 S22: -0.0951 S23: 0.5622 REMARK 3 S31: 0.6786 S32: 0.1052 S33: -0.3678 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5969 -32.4731 -28.9523 REMARK 3 T TENSOR REMARK 3 T11: 0.1851 T22: 0.2814 REMARK 3 T33: 0.2966 T12: -0.0323 REMARK 3 T13: 0.0174 T23: -0.0397 REMARK 3 L TENSOR REMARK 3 L11: 9.1386 L22: 7.4202 REMARK 3 L33: 8.9647 L12: -5.6508 REMARK 3 L13: 7.6634 L23: -4.7487 REMARK 3 S TENSOR REMARK 3 S11: -0.1863 S12: 0.2999 S13: -0.2709 REMARK 3 S21: 0.0090 S22: 0.0003 S23: -0.0553 REMARK 3 S31: -0.0412 S32: 0.3161 S33: 0.0952 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 209 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0487 -27.9325 -28.1192 REMARK 3 T TENSOR REMARK 3 T11: 0.2431 T22: 0.3953 REMARK 3 T33: 0.2796 T12: 0.0413 REMARK 3 T13: 0.0356 T23: -0.0378 REMARK 3 L TENSOR REMARK 3 L11: 0.1847 L22: 0.8654 REMARK 3 L33: 4.2991 L12: 0.3140 REMARK 3 L13: 0.7630 L23: 1.4420 REMARK 3 S TENSOR REMARK 3 S11: 0.0684 S12: 0.0590 S13: -0.2135 REMARK 3 S21: 0.1609 S22: 0.1352 S23: 0.0316 REMARK 3 S31: -0.1398 S32: 0.0608 S33: -0.1611 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8147 -27.0605 -6.7574 REMARK 3 T TENSOR REMARK 3 T11: 0.4444 T22: 0.3387 REMARK 3 T33: 0.3004 T12: -0.0121 REMARK 3 T13: 0.1083 T23: 0.1117 REMARK 3 L TENSOR REMARK 3 L11: 6.3560 L22: 7.1893 REMARK 3 L33: 7.5399 L12: 1.7425 REMARK 3 L13: 3.8708 L23: 6.8394 REMARK 3 S TENSOR REMARK 3 S11: -0.2091 S12: -0.5750 S13: -0.3619 REMARK 3 S21: 1.0281 S22: 0.1650 S23: 0.4273 REMARK 3 S31: 0.6769 S32: -0.5750 S33: 0.0010 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 244 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4250 -27.4951 -18.8544 REMARK 3 T TENSOR REMARK 3 T11: 0.2914 T22: 0.3459 REMARK 3 T33: 0.3372 T12: -0.0268 REMARK 3 T13: 0.0394 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 3.3667 L22: 8.1646 REMARK 3 L33: 6.2901 L12: 2.9558 REMARK 3 L13: 3.9641 L23: 7.0279 REMARK 3 S TENSOR REMARK 3 S11: 0.2891 S12: -0.2491 S13: -0.3653 REMARK 3 S21: 0.7717 S22: -0.2796 S23: 0.1194 REMARK 3 S31: 1.0637 S32: -0.9922 S33: 0.0194 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5GWX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1300001586. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97622 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20701 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.205 REMARK 200 RESOLUTION RANGE LOW (A) : 29.195 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.0750 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5HIL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: GSMT (6.6 MG/ML) IN REMARK 280 100 MM TES PH 7.3, 2 M KCL, 1 MM EDTA, 1 MM 2-MERCAPTOETHANOL, REMARK 280 0.1 MM SAH AND 0.2 M SARCOSINE. CRYSTALLIZATION REAGENT: 0.2 M REMARK 280 POTASSIUM SODIUM TARTRATE TETRAHYDRATE AND 20% (W/V) REMARK 280 POLYETHYLENE GLYCOL 3350. 2 MM SAM AND 685 MM SARCOSINE WERE REMARK 280 SOAKED INTO CRYSTALS BEFORE DATA COLLECTION, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.86650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.35500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.46100 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 25.86650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.35500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.46100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.86650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.35500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.46100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 25.86650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.35500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.46100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 430 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 440 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 452 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 489 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 497 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLN A 3 REMARK 465 TYR A 4 REMARK 465 GLY A 5 REMARK 465 LYS A 6 REMARK 465 GLN A 7 REMARK 465 ASP A 8 REMARK 465 PHE A 9 REMARK 465 GLY A 10 REMARK 465 ASP A 11 REMARK 465 ASN A 12 REMARK 465 PRO A 13 REMARK 465 ILE A 14 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 VAL A 16 CG1 CG2 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 SER A 19 OG REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 GLU A 92 CG CD OE1 OE2 REMARK 470 ARG A 109 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 175 CG OD1 OD2 REMARK 470 TYR A 177 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 178 OG REMARK 470 LYS A 180 CG CD CE NZ REMARK 470 VAL A 197 CG2 REMARK 470 GLN A 236 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 186 72.13 48.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAR A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 DBREF 5GWX A 1 263 UNP F6KV61 F6KV61_9EURY 1 263 SEQADV 5GWX MET A -20 UNP F6KV61 EXPRESSION TAG SEQADV 5GWX GLY A -19 UNP F6KV61 EXPRESSION TAG SEQADV 5GWX SER A -18 UNP F6KV61 EXPRESSION TAG SEQADV 5GWX SER A -17 UNP F6KV61 EXPRESSION TAG SEQADV 5GWX HIS A -16 UNP F6KV61 EXPRESSION TAG SEQADV 5GWX HIS A -15 UNP F6KV61 EXPRESSION TAG SEQADV 5GWX HIS A -14 UNP F6KV61 EXPRESSION TAG SEQADV 5GWX HIS A -13 UNP F6KV61 EXPRESSION TAG SEQADV 5GWX HIS A -12 UNP F6KV61 EXPRESSION TAG SEQADV 5GWX HIS A -11 UNP F6KV61 EXPRESSION TAG SEQADV 5GWX SER A -10 UNP F6KV61 EXPRESSION TAG SEQADV 5GWX SER A -9 UNP F6KV61 EXPRESSION TAG SEQADV 5GWX GLY A -8 UNP F6KV61 EXPRESSION TAG SEQADV 5GWX LEU A -7 UNP F6KV61 EXPRESSION TAG SEQADV 5GWX VAL A -6 UNP F6KV61 EXPRESSION TAG SEQADV 5GWX PRO A -5 UNP F6KV61 EXPRESSION TAG SEQADV 5GWX ARG A -4 UNP F6KV61 EXPRESSION TAG SEQADV 5GWX GLY A -3 UNP F6KV61 EXPRESSION TAG SEQADV 5GWX SER A -2 UNP F6KV61 EXPRESSION TAG SEQADV 5GWX HIS A -1 UNP F6KV61 EXPRESSION TAG SEQADV 5GWX MET A 0 UNP F6KV61 EXPRESSION TAG SEQRES 1 A 284 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 284 LEU VAL PRO ARG GLY SER HIS MET MET ASN GLN TYR GLY SEQRES 3 A 284 LYS GLN ASP PHE GLY ASP ASN PRO ILE GLU VAL ARG GLU SEQRES 4 A 284 SER ASP HIS TYR GLU GLU GLU TYR VAL LEU GLY PHE VAL SEQRES 5 A 284 ASP LYS TRP ASP GLU LEU ILE ASP TRP GLU SER ARG ALA SEQRES 6 A 284 GLU SER GLU GLY ASP THR ILE ILE ASN ILE LEU LYS GLU SEQRES 7 A 284 ARG GLY VAL LYS LYS VAL LEU ASP VAL ALA THR GLY THR SEQRES 8 A 284 GLY PHE ASN SER VAL ARG LEU LEU GLN ALA GLY PHE ASP SEQRES 9 A 284 VAL VAL SER ALA ASP GLY SER ALA GLU MET LEU VAL LYS SEQRES 10 A 284 ALA PHE ASP ASN ALA ARG ASP HIS GLY TYR LEU MET ARG SEQRES 11 A 284 THR VAL GLN ALA ASP TRP ARG TRP MET ASN LYS ASP ILE SEQRES 12 A 284 HIS ASP LYS PHE ASP ALA ILE VAL CYS LEU GLY ASN SER SEQRES 13 A 284 PHE THR HIS LEU PHE ASP GLU GLY ASP ARG ARG LYS ALA SEQRES 14 A 284 LEU ALA GLU PHE TYR ALA LEU LEU LYS HIS ASP GLY VAL SEQRES 15 A 284 LEU LEU LEU ASP GLN ARG ASN TYR ASP ALA ILE LEU ASP SEQRES 16 A 284 ASP GLY TYR SER SER LYS HIS ALA HIS TYR TYR CYS GLY SEQRES 17 A 284 ASP THR VAL SER VAL TYR PRO GLU HIS VAL ASP GLU GLY SEQRES 18 A 284 LEU ALA ARG PHE LYS TYR GLU PHE SER ASP GLY SER VAL SEQRES 19 A 284 TYR ASN LEU ASN MET PHE PRO LEU ARG LYS ASP TYR THR SEQRES 20 A 284 ARG GLN LEU LEU HIS GLU VAL GLY PHE GLN GLU ILE ASN SEQRES 21 A 284 THR LEU GLY ASP PHE LYS GLU THR TYR LYS GLU ASP GLU SEQRES 22 A 284 PRO ASP PHE PHE LEU HIS VAL ALA GLU LYS ASN HET SAM A 301 27 HET SAR A 302 6 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM SAR SARCOSINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 SAR C3 H7 N O2 FORMUL 4 EDO 4(C2 H6 O2) FORMUL 8 HOH *97(H2 O) HELIX 1 AA1 VAL A 16 ILE A 38 1 23 HELIX 2 AA2 ASP A 39 GLU A 47 1 9 HELIX 3 AA3 ASP A 49 ARG A 58 1 10 HELIX 4 AA4 GLY A 71 GLY A 81 1 11 HELIX 5 AA5 SER A 90 HIS A 104 1 15 HELIX 6 AA6 ASP A 114 ASP A 121 5 8 HELIX 7 AA7 SER A 135 LEU A 139 5 5 HELIX 8 AA8 ASP A 141 LEU A 155 1 15 HELIX 9 AA9 ASN A 168 GLY A 176 1 9 HELIX 10 AB1 TYR A 177 LYS A 180 5 4 HELIX 11 AB2 ARG A 222 VAL A 233 1 12 SHEET 1 AA1 7 THR A 110 GLN A 112 0 SHEET 2 AA1 7 ASP A 83 ASP A 88 1 N SER A 86 O VAL A 111 SHEET 3 AA1 7 LYS A 62 ASP A 65 1 N VAL A 63 O ASP A 83 SHEET 4 AA1 7 PHE A 126 CYS A 131 1 O VAL A 130 N LEU A 64 SHEET 5 AA1 7 LEU A 156 ARG A 167 1 O LEU A 163 N ILE A 129 SHEET 6 AA1 7 PHE A 255 GLU A 261 -1 O ALA A 260 N LEU A 162 SHEET 7 AA1 7 GLU A 237 ASP A 243 -1 N ASP A 243 O PHE A 255 SHEET 1 AA2 4 HIS A 183 TYR A 185 0 SHEET 2 AA2 4 VAL A 190 ASP A 198 -1 O VAL A 192 N HIS A 183 SHEET 3 AA2 4 LEU A 201 PHE A 208 -1 O ARG A 203 N HIS A 196 SHEET 4 AA2 4 VAL A 213 MET A 218 -1 O TYR A 214 N TYR A 206 SITE 1 AC1 17 ARG A 43 ALA A 67 THR A 68 GLY A 69 SITE 2 AC1 17 ASN A 73 ASP A 88 GLY A 89 MET A 93 SITE 3 AC1 17 ALA A 113 TRP A 115 LEU A 132 GLY A 133 SITE 4 AC1 17 SER A 135 SAR A 302 HOH A 416 HOH A 479 SITE 5 AC1 17 HOH A 496 SITE 1 AC2 6 GLY A 133 ASN A 134 HIS A 138 ARG A 167 SITE 2 AC2 6 TYR A 206 SAM A 301 SITE 1 AC3 3 TRP A 40 ASN A 100 HIS A 104 SITE 1 AC4 4 ARG A 167 ASN A 168 ILE A 172 ASP A 254 SITE 1 AC5 6 GLU A 47 ILE A 51 ILE A 52 ASN A 73 SITE 2 AC5 6 ARG A 76 HOH A 466 SITE 1 AC6 5 TRP A 40 ALA A 44 ARG A 76 GLN A 79 SITE 2 AC6 5 HIS A 104 CRYST1 51.733 120.710 130.922 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019330 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008284 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007638 0.00000