HEADER HYDROLASE 15-SEP-16 5GX3 TITLE LUCIFERIN-REGENERATING ENZYME COLLECTED WITH SERIAL SYNCHROTRON TITLE 2 ROTATIONAL CRYSTALLOGRAPHY WITH ACCUMULATED DOSE OF 6.9 MGY (6TH TITLE 3 MEASUREMENT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LUCIFERIN REGENERATING ENZYME; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHOTINUS PYRALIS; SOURCE 3 ORGANISM_COMMON: COMMON EASTERN FIREFLY; SOURCE 4 ORGANISM_TAXID: 7054; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15 KEYWDS BETA-PROOELLER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.HASEGAWA,K.YAMASHITA,T.MURAI,N.NUEMKET,K.HIRATA,G.UENO,H.AGO, AUTHOR 2 T.NAKATSU,T.KUMASAKA,M.YAMAMOTO REVDAT 3 08-NOV-23 5GX3 1 LINK REVDAT 2 26-FEB-20 5GX3 1 REMARK REVDAT 1 04-JAN-17 5GX3 0 JRNL AUTH K.HASEGAWA,K.YAMASHITA,T.MURAI,N.NUEMKET,K.HIRATA,G.UENO, JRNL AUTH 2 H.AGO,T.NAKATSU,T.KUMASAKA,M.YAMAMOTO JRNL TITL DEVELOPMENT OF A DOSE-LIMITING DATA COLLECTION STRATEGY FOR JRNL TITL 2 SERIAL SYNCHROTRON ROTATION CRYSTALLOGRAPHY JRNL REF J SYNCHROTRON RADIAT V. 24 29 2017 JRNL REFN ESSN 1600-5775 JRNL PMID 28009544 JRNL DOI 10.1107/S1600577516016362 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 78675 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.980 REMARK 3 FREE R VALUE TEST SET COUNT : 3129 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1776 - 4.4816 1.00 3446 141 0.1604 0.1517 REMARK 3 2 4.4816 - 3.5577 1.00 3433 144 0.1353 0.1580 REMARK 3 3 3.5577 - 3.1082 1.00 3413 141 0.1485 0.1789 REMARK 3 4 3.1082 - 2.8241 1.00 3444 146 0.1631 0.1709 REMARK 3 5 2.8241 - 2.6217 1.00 3433 139 0.1669 0.2017 REMARK 3 6 2.6217 - 2.4671 1.00 3424 143 0.1695 0.1862 REMARK 3 7 2.4671 - 2.3436 1.00 3450 145 0.1696 0.1968 REMARK 3 8 2.3436 - 2.2416 1.00 3427 141 0.1619 0.1654 REMARK 3 9 2.2416 - 2.1553 1.00 3404 138 0.1608 0.1630 REMARK 3 10 2.1553 - 2.0809 1.00 3459 140 0.1626 0.1856 REMARK 3 11 2.0809 - 2.0158 1.00 3414 143 0.1565 0.1600 REMARK 3 12 2.0158 - 1.9582 1.00 3467 146 0.1628 0.1638 REMARK 3 13 1.9582 - 1.9067 1.00 3410 139 0.1692 0.1672 REMARK 3 14 1.9067 - 1.8602 1.00 3450 149 0.1814 0.1864 REMARK 3 15 1.8602 - 1.8179 1.00 3409 138 0.1863 0.1801 REMARK 3 16 1.8179 - 1.7792 1.00 3453 140 0.1915 0.2583 REMARK 3 17 1.7792 - 1.7436 1.00 3412 143 0.1934 0.2073 REMARK 3 18 1.7436 - 1.7107 1.00 3473 141 0.2037 0.2494 REMARK 3 19 1.7107 - 1.6801 1.00 3412 145 0.2089 0.2061 REMARK 3 20 1.6801 - 1.6517 1.00 3423 141 0.2325 0.2335 REMARK 3 21 1.6517 - 1.6250 1.00 3427 140 0.2417 0.2670 REMARK 3 22 1.6250 - 1.6000 1.00 3463 146 0.2539 0.2796 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2461 REMARK 3 ANGLE : 0.855 3346 REMARK 3 CHIRALITY : 0.061 375 REMARK 3 PLANARITY : 0.006 427 REMARK 3 DIHEDRAL : 13.654 1452 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SF FILE CONTAINS FRIEDEL PAIRS UNDER REMARK 3 I/F_MINUS AND I/F_PLUS COLUMNS. REMARK 4 REMARK 4 5GX3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1300001623. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9839 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78740 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 38.68 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5582 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 50.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 40.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 16.07 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX 1.10.1_2155 REMARK 200 STARTING MODEL: 5GTQ REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150 UL OF PURIFIED LRE SOLUTION (30 REMARK 280 MG/ML LRE, 10 MM HEPES(PH7.5), 100 MM NACL, 10 %(V/V) GLYCEROL) REMARK 280 WAS MIXED WITH 240 UL OF PRECIPITANT SOLUTION (31.3 %(W/V) REMARK 280 PEG3350, 0.1 M HEPES(PH7.5), 10 %(V/V) MPD, 0.2 M MGCL2) AND 15 REMARK 280 UL OF SEED-CRYSTAL SOLUTION (31.3 %(W/V) PEG3350, 0.1 M REMARK 280 HEPES(PH7.5), 10 %(V/V) MPD, 0.2 M MGCL2, 0.1 M NACL, 5 %(V/V) REMARK 280 GLYCEROL), BATCH MODE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.73450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.16300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.42950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.16300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.73450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.42950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 764 O HOH A 796 1.84 REMARK 500 O HOH A 509 O HOH A 777 1.92 REMARK 500 O HOH A 575 O HOH A 696 1.94 REMARK 500 O HOH A 761 O HOH A 842 1.94 REMARK 500 O HOH A 691 O HOH A 777 2.00 REMARK 500 O HOH A 666 O HOH A 825 2.00 REMARK 500 O HOH A 781 O HOH A 845 2.02 REMARK 500 O HOH A 509 O HOH A 691 2.02 REMARK 500 O HOH A 780 O HOH A 808 2.04 REMARK 500 O HOH A 574 O HOH A 811 2.07 REMARK 500 O HOH A 540 O HOH A 608 2.08 REMARK 500 O HOH A 583 O HOH A 622 2.08 REMARK 500 O HOH A 503 O HOH A 561 2.09 REMARK 500 O HOH A 558 O HOH A 694 2.09 REMARK 500 OH TYR A 42 O HOH A 501 2.10 REMARK 500 O HOH A 585 O HOH A 808 2.13 REMARK 500 O VAL A 286 O HOH A 502 2.15 REMARK 500 O HOH A 503 O HOH A 557 2.15 REMARK 500 O HOH A 808 O HOH A 848 2.16 REMARK 500 O HOH A 763 O HOH A 808 2.16 REMARK 500 O HOH A 556 O HOH A 790 2.17 REMARK 500 O HOH A 592 O HOH A 758 2.17 REMARK 500 O HOH A 711 O HOH A 808 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 544 O HOH A 808 4555 2.03 REMARK 500 O HOH A 776 O HOH A 804 3755 2.11 REMARK 500 O HOH A 802 O HOH A 804 3755 2.15 REMARK 500 O HOH A 502 O HOH A 510 4455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 59 -10.89 -141.75 REMARK 500 GLU A 76 -105.22 60.53 REMARK 500 VAL A 87 -34.64 -148.30 REMARK 500 ASN A 110 -125.67 -125.59 REMARK 500 ASN A 160 -136.57 -135.81 REMARK 500 ASP A 212 -108.64 -127.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 18 OE1 REMARK 620 2 ASN A 160 OD1 177.3 REMARK 620 3 ASP A 212 OD1 95.6 83.4 REMARK 620 4 HOH A 562 O 88.5 94.0 93.1 REMARK 620 5 HOH A 698 O 89.2 91.6 173.5 91.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GX5 RELATED DB: PDB REMARK 900 RELATED ID: 5GX4 RELATED DB: PDB REMARK 900 RELATED ID: 5GX2 RELATED DB: PDB REMARK 900 RELATED ID: 5GX1 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 DEPOSITORS STATE THAT THE PROTEIN SEQUENCE SHOULD BE THE SAME AS REMARK 999 THE DATABASE SEQUENCE UNP Q95YI4. THE ACCESSION NUMBER IS REMARK 999 AB062786.2 FOR THE SEQUENCE. DBREF 5GX3 A 1 308 UNP Q95YI4 Q95YI4_PHOPY 1 308 SEQADV 5GX3 GLY A -2 UNP Q95YI4 EXPRESSION TAG SEQADV 5GX3 SER A -1 UNP Q95YI4 EXPRESSION TAG SEQADV 5GX3 HIS A 0 UNP Q95YI4 EXPRESSION TAG SEQADV 5GX3 ILE A 133 UNP Q95YI4 VAL 133 SEE SEQUENCE DETAILS SEQADV 5GX3 TYR A 268 UNP Q95YI4 HIS 268 SEE SEQUENCE DETAILS SEQADV 5GX3 PHE A 281 UNP Q95YI4 LEU 281 SEE SEQUENCE DETAILS SEQRES 1 A 311 GLY SER HIS MET GLY PRO VAL VAL GLU LYS ILE ALA GLU SEQRES 2 A 311 LEU GLY LYS TYR THR VAL GLY GLU GLY PRO HIS TRP ASP SEQRES 3 A 311 HIS GLU THR GLN THR LEU TYR PHE VAL ASP THR VAL GLU SEQRES 4 A 311 LYS THR PHE HIS LYS TYR VAL PRO SER GLN LYS LYS TYR SEQRES 5 A 311 THR PHE CYS LYS VAL ASP LYS LEU VAL SER PHE ILE ILE SEQRES 6 A 311 PRO LEU ALA GLY SER PRO GLY ARG PHE VAL VAL SER LEU SEQRES 7 A 311 GLU ARG GLU ILE ALA ILE LEU THR TRP ASP GLY VAL SER SEQRES 8 A 311 ALA ALA PRO THR SER ILE GLU ALA ILE VAL ASN VAL GLU SEQRES 9 A 311 PRO HIS ILE LYS ASN ASN ARG LEU ASN ASP GLY LYS ALA SEQRES 10 A 311 ASP PRO LEU GLY ASN LEU TRP THR GLY THR MET ALA ILE SEQRES 11 A 311 ASP ALA GLY LEU PRO ILE GLY PRO VAL THR GLY SER LEU SEQRES 12 A 311 TYR HIS LEU GLY ALA ASP LYS LYS VAL LYS MET HIS GLU SEQRES 13 A 311 SER ASN ILE ALA ILE ALA ASN GLY LEU ALA TRP SER ASN SEQRES 14 A 311 ASP LEU LYS LYS MET TYR TYR ILE ASP SER GLY LYS ARG SEQRES 15 A 311 ARG VAL ASP GLU TYR ASP TYR ASP ALA SER THR LEU SER SEQRES 16 A 311 ILE SER ASN GLN ARG PRO LEU PHE THR PHE GLU LYS HIS SEQRES 17 A 311 GLU VAL PRO GLY TYR PRO ASP GLY GLN THR ILE ASP GLU SEQRES 18 A 311 GLU GLY ASN LEU TRP VAL ALA VAL PHE GLN GLY GLN ARG SEQRES 19 A 311 ILE ILE LYS ILE SER THR GLN GLN PRO GLU VAL LEU LEU SEQRES 20 A 311 ASP THR VAL LYS ILE PRO ASP PRO GLN VAL THR SER VAL SEQRES 21 A 311 ALA PHE GLY GLY PRO ASN LEU ASP GLU LEU TYR VAL THR SEQRES 22 A 311 SER ALA GLY LEU GLN LEU ASP ASP SER SER PHE ASP LYS SEQRES 23 A 311 SER LEU VAL ASN GLY HIS VAL TYR ARG VAL THR GLY LEU SEQRES 24 A 311 GLY VAL LYS GLY PHE ALA GLY VAL LYS VAL LYS LEU HET HG A 401 1 HET HG A 402 1 HET MG A 403 1 HET MPD A 404 8 HET MPD A 405 8 HET GOL A 406 6 HETNAM HG MERCURY (II) ION HETNAM MG MAGNESIUM ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 HG 2(HG 2+) FORMUL 4 MG MG 2+ FORMUL 5 MPD 2(C6 H14 O2) FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *353(H2 O) HELIX 1 AA1 ALA A 9 GLY A 12 5 4 HELIX 2 AA2 ALA A 145 LYS A 147 5 3 HELIX 3 AA3 GLU A 203 GLU A 206 5 4 HELIX 4 AA4 ASP A 282 VAL A 286 5 5 SHEET 1 AA1 4 VAL A 4 LYS A 7 0 SHEET 2 AA1 4 TYR A 291 THR A 294 -1 O ARG A 292 N GLU A 6 SHEET 3 AA1 4 GLU A 266 SER A 271 -1 N VAL A 269 O TYR A 291 SHEET 4 AA1 4 VAL A 254 GLY A 260 -1 N ALA A 258 O TYR A 268 SHEET 1 AA2 4 GLY A 17 ASP A 23 0 SHEET 2 AA2 4 THR A 28 ASP A 33 -1 O THR A 28 N ASP A 23 SHEET 3 AA2 4 THR A 38 VAL A 43 -1 O TYR A 42 N LEU A 29 SHEET 4 AA2 4 LYS A 48 LYS A 53 -1 O LYS A 48 N VAL A 43 SHEET 1 AA3 4 ILE A 61 PRO A 63 0 SHEET 2 AA3 4 ARG A 70 LEU A 75 -1 O VAL A 72 N ILE A 62 SHEET 3 AA3 4 GLU A 78 THR A 83 -1 O LEU A 82 N PHE A 71 SHEET 4 AA3 4 SER A 93 ASN A 99 -1 O GLU A 95 N ILE A 81 SHEET 1 AA4 4 ASN A 107 ALA A 114 0 SHEET 2 AA4 4 LEU A 120 ALA A 126 -1 O GLY A 123 N ASN A 110 SHEET 3 AA4 4 GLY A 138 LEU A 143 -1 O TYR A 141 N THR A 122 SHEET 4 AA4 4 VAL A 149 ILE A 156 -1 O HIS A 152 N LEU A 140 SHEET 1 AA5 4 ALA A 159 TRP A 164 0 SHEET 2 AA5 4 LYS A 170 ASP A 175 -1 O TYR A 172 N ALA A 163 SHEET 3 AA5 4 ARG A 180 ASP A 187 -1 O ASP A 182 N TYR A 173 SHEET 4 AA5 4 SER A 192 THR A 201 -1 O LEU A 199 N VAL A 181 SHEET 1 AA6 4 TYR A 210 ILE A 216 0 SHEET 2 AA6 4 LEU A 222 PHE A 227 -1 O TRP A 223 N THR A 215 SHEET 3 AA6 4 ARG A 231 ILE A 235 -1 O ILE A 233 N VAL A 224 SHEET 4 AA6 4 LEU A 243 LYS A 248 -1 O LEU A 244 N LYS A 234 LINK OE1 GLU A 18 MG MG A 403 1555 1555 2.01 LINK SG CYS A 52 HG A HG A 401 1555 1555 2.69 LINK OD1 ASN A 160 MG MG A 403 1555 1555 2.06 LINK OD1 ASP A 212 MG MG A 403 1555 1555 2.10 LINK MG MG A 403 O HOH A 562 1555 1555 2.00 LINK MG MG A 403 O HOH A 698 1555 1555 2.16 CISPEP 1 LEU A 131 PRO A 132 0 2.48 SITE 1 AC1 4 PHE A 39 CYS A 52 TRP A 84 HG A 402 SITE 1 AC2 4 ILE A 61 LEU A 82 TRP A 84 HG A 401 SITE 1 AC3 5 GLU A 18 ASN A 160 ASP A 212 HOH A 562 SITE 2 AC3 5 HOH A 698 SITE 1 AC4 3 VAL A 149 SER A 280 HOH A 583 SITE 1 AC5 6 ASN A 160 ASP A 212 PHE A 227 HOH A 525 SITE 2 AC5 6 HOH A 540 HOH A 608 SITE 1 AC6 7 SER A 67 GLY A 69 ARG A 70 PHE A 71 SITE 2 AC6 7 HOH A 508 HOH A 511 HOH A 638 CRYST1 47.469 76.859 84.326 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021066 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013011 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011859 0.00000