HEADER SUGAR BINDING PROTEIN 15-SEP-16 5GX8 TITLE CRYSTAL STRUCTURE OF SOLUTE-BINDING PROTEIN RELATED TO TITLE 2 GLYCOSAMINOGLYCANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTRACELLULAR SOLUTE-BINDING PROTEIN FAMILY 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 28-500; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOBACILLUS MONILIFORMIS DSM 12112; SOURCE 3 ORGANISM_TAXID: 519441; SOURCE 4 STRAIN: DSM 12112; SOURCE 5 GENE: SMON_0123; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS GLYCOSAMINOGLYCAN, ABC TRANSPORTER, SOLUTE-BINDING PROTEIN, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.OIKI,B.MIKAMI,K.MURATA,W.HASHIMOTO REVDAT 2 08-NOV-23 5GX8 1 REMARK REVDAT 1 19-JUL-17 5GX8 0 JRNL AUTH S.OIKI,B.MIKAMI,Y.MARUYAMA,K.MURATA,W.HASHIMOTO JRNL TITL A BACTERIAL ABC TRANSPORTER ENABLES IMPORT OF MAMMALIAN HOST JRNL TITL 2 GLYCOSAMINOGLYCANS JRNL REF SCI REP V. 7 1069 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28432302 JRNL DOI 10.1038/S41598-017-00917-Y REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 138900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 6979 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.3739 - 5.5185 0.99 4493 227 0.1902 0.2090 REMARK 3 2 5.5185 - 4.3821 1.00 4450 233 0.1716 0.1920 REMARK 3 3 4.3821 - 3.8287 1.00 4434 239 0.1671 0.1903 REMARK 3 4 3.8287 - 3.4788 1.00 4395 235 0.1830 0.2028 REMARK 3 5 3.4788 - 3.2296 1.00 4426 254 0.2007 0.2122 REMARK 3 6 3.2296 - 3.0393 1.00 4409 213 0.2055 0.2213 REMARK 3 7 3.0393 - 2.8871 1.00 4469 206 0.2127 0.2476 REMARK 3 8 2.8871 - 2.7615 1.00 4405 245 0.2078 0.2411 REMARK 3 9 2.7615 - 2.6552 1.00 4380 242 0.2048 0.2371 REMARK 3 10 2.6552 - 2.5636 1.00 4414 239 0.2031 0.2436 REMARK 3 11 2.5636 - 2.4834 1.00 4403 246 0.1970 0.2202 REMARK 3 12 2.4834 - 2.4125 1.00 4413 237 0.1995 0.2484 REMARK 3 13 2.4125 - 2.3490 1.00 4359 232 0.1944 0.2346 REMARK 3 14 2.3490 - 2.2917 1.00 4414 217 0.1939 0.2344 REMARK 3 15 2.2917 - 2.2396 1.00 4398 268 0.1885 0.2199 REMARK 3 16 2.2396 - 2.1919 1.00 4392 256 0.1975 0.2421 REMARK 3 17 2.1919 - 2.1481 1.00 4434 205 0.1966 0.2368 REMARK 3 18 2.1481 - 2.1075 1.00 4309 249 0.1945 0.2451 REMARK 3 19 2.1075 - 2.0699 1.00 4458 225 0.2011 0.2505 REMARK 3 20 2.0699 - 2.0348 1.00 4397 252 0.2058 0.2561 REMARK 3 21 2.0348 - 2.0020 1.00 4365 249 0.2132 0.2737 REMARK 3 22 2.0020 - 1.9712 1.00 4358 228 0.2154 0.2817 REMARK 3 23 1.9712 - 1.9422 1.00 4438 218 0.2221 0.2850 REMARK 3 24 1.9422 - 1.9148 1.00 4434 231 0.2246 0.2816 REMARK 3 25 1.9148 - 1.8890 1.00 4379 203 0.2190 0.2627 REMARK 3 26 1.8890 - 1.8644 1.00 4413 234 0.2261 0.2823 REMARK 3 27 1.8644 - 1.8411 1.00 4334 235 0.2300 0.2813 REMARK 3 28 1.8411 - 1.8189 1.00 4457 233 0.2373 0.2757 REMARK 3 29 1.8189 - 1.7978 1.00 4393 215 0.2516 0.3133 REMARK 3 30 1.7978 - 1.7776 0.93 4098 213 0.2611 0.3212 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 7945 REMARK 3 ANGLE : 1.246 10745 REMARK 3 CHIRALITY : 0.078 1135 REMARK 3 PLANARITY : 0.008 1383 REMARK 3 DIHEDRAL : 15.542 4735 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5GX8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1300001507. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 139193 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5GUB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM SODIUM TARTRATE REMARK 280 TETRAHYDRATE, 0.1M TRI-SODIUM CITRATE DEHYDRATE (PH 5.6), 2M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 71.02500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 27 REMARK 465 MET B 27 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 838 O HOH A 1016 1.74 REMARK 500 OG SER B 249 O HOH B 701 2.01 REMARK 500 NZ LYS B 253 O HOH B 701 2.02 REMARK 500 OG1 THR A 323 O HOH A 701 2.02 REMARK 500 O ILE B 467 O HOH B 701 2.03 REMARK 500 O HOH A 709 O HOH A 952 2.05 REMARK 500 OE1 GLU A 493 O HOH A 702 2.13 REMARK 500 NZ LYS B 250 O HOH B 702 2.16 REMARK 500 O HOH A 701 O HOH A 871 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 702 O HOH B 703 1556 1.71 REMARK 500 O HOH A 1028 O HOH B 866 1556 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 173 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 173 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 GLY A 265 C - N - CA ANGL. DEV. = -12.6 DEGREES REMARK 500 ARG B 173 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG B 173 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 114 -4.90 -140.15 REMARK 500 SER A 154 -86.50 -122.29 REMARK 500 GLU A 260 32.76 -99.42 REMARK 500 SER A 364 -61.76 -120.55 REMARK 500 LEU A 401 -109.07 -137.37 REMARK 500 SER B 154 -85.04 -119.02 REMARK 500 ASP B 189 70.26 38.01 REMARK 500 ASP B 258 112.73 -29.31 REMARK 500 ALA B 280 143.41 -171.43 REMARK 500 LEU B 401 -108.09 -140.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 189 OD1 REMARK 620 2 ASN A 191 OD1 92.3 REMARK 620 3 ASN A 193 OD1 82.8 72.1 REMARK 620 4 LYS A 195 O 88.9 155.6 83.9 REMARK 620 5 ASP A 197 OD1 163.2 99.2 89.1 75.6 REMARK 620 6 GLU A 198 OE1 110.2 121.3 159.6 80.8 74.1 REMARK 620 7 GLU A 198 OE2 90.5 76.2 147.1 128.3 104.1 51.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 189 OD1 REMARK 620 2 ASN B 191 OD1 79.8 REMARK 620 3 ASN B 193 OD1 64.8 58.6 REMARK 620 4 LYS B 195 O 66.6 144.2 94.5 REMARK 620 5 ASP B 197 OD1 153.2 126.2 119.8 86.6 REMARK 620 6 GLU B 198 OE1 101.7 116.5 165.7 83.4 74.3 REMARK 620 7 GLU B 198 OE2 94.8 68.8 125.7 124.1 100.9 47.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TAR B 610 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GX6 RELATED DB: PDB REMARK 900 RELATED ID: 5GX7 RELATED DB: PDB DBREF 5GX8 A 28 500 UNP D1AWE0 D1AWE0_STRM9 28 500 DBREF 5GX8 B 28 500 UNP D1AWE0 D1AWE0_STRM9 28 500 SEQADV 5GX8 MET A 27 UNP D1AWE0 EXPRESSION TAG SEQADV 5GX8 MET B 27 UNP D1AWE0 EXPRESSION TAG SEQRES 1 A 474 MET LYS GLU THR THR ILE PHE ALA MET HIS LEU GLY LYS SEQRES 2 A 474 ALA LEU ASP PRO ASN LEU PRO VAL PHE VAL LYS ALA GLU SEQRES 3 A 474 LYS ASP THR ASN ILE LYS LEU VAL ASN VAL ALA SER GLN SEQRES 4 A 474 ASN GLN THR ASP GLN ILE GLN ALA TYR ASN LEU MET LEU SEQRES 5 A 474 THR GLU GLY LYS LEU PRO ASP ILE VAL SER TYR GLU LEU SEQRES 6 A 474 SER ALA ASP LEU GLU ASN LEU GLY ILE GLU GLY GLY LEU SEQRES 7 A 474 ILE PRO LEU GLU ASP LEU ILE ASN GLN HIS ALA PRO ASN SEQRES 8 A 474 LEU LYS LYS PHE PHE GLU GLU ASN PRO ARG TYR LYS LYS SEQRES 9 A 474 ASP ALA VAL ALA VAL ASP GLY HIS ILE TYR MET ILE PRO SEQRES 10 A 474 ASN TYR TYR ASP TYR PHE ASN ILE LYS VAL SER GLN GLY SEQRES 11 A 474 TYR PHE ILE ARG GLN ASP TRP LEU GLU LYS LEU GLY LEU SEQRES 12 A 474 LYS GLU PRO ARG THR VAL ASP GLU LEU TYR THR THR LEU SEQRES 13 A 474 LYS ALA PHE ARG GLU LYS ASP PRO ASN GLY ASN GLY LYS SEQRES 14 A 474 LYS ASP GLU VAL PRO PHE PHE VAL ARG ALA ASN ASN VAL SEQRES 15 A 474 ARG LYS VAL LEU THR SER LEU VAL ASP LEU PHE LYS ALA SEQRES 16 A 474 SER PRO ILE TRP TYR GLU GLU ASN GLY MET VAL LYS TYR SEQRES 17 A 474 GLY PRO ALA GLN LYS GLU PHE LYS HIS ALA ILE LYS GLU SEQRES 18 A 474 LEU SER LYS TRP TYR LYS GLU GLY LEU ILE ASP GLU GLU SEQRES 19 A 474 ILE PHE THR ARG GLY LEU GLU SER ARG ASP TYR LEU LEU SEQRES 20 A 474 SER ASN ASN LEU GLY GLY ALA THR ASP ASP TRP ILE ALA SEQRES 21 A 474 SER THR SER SER TYR ASN ARG ASN LEU ALA ASP LYS ILE SEQRES 22 A 474 PRO GLY PHE ASN LEU LYS LEU VAL LEU PRO TYR GLU LEU SEQRES 23 A 474 ASN GLY ASN ALA LYS THR ARG HIS ALA ARG THR THR TYR SEQRES 24 A 474 LEU GLY GLY TRP GLY ILE SER LYS ASP ALA LYS ASP PRO SEQRES 25 A 474 VAL SER LEU ILE LYS TYR PHE ASP TYR TRP TYR SER VAL SEQRES 26 A 474 GLU GLY ARG ARG LEU TRP ASN PHE GLY ILE GLU GLY SER SEQRES 27 A 474 GLU TYR THR LEU VAL ASP GLY LYS PRO VAL PHE THR ASP SEQRES 28 A 474 LYS VAL LEU LYS ASN PRO ASP GLY LYS THR PRO LEU ALA SEQRES 29 A 474 VAL LEU ARG GLU VAL GLY ALA GLN TYR ARG LEU GLY ALA SEQRES 30 A 474 PHE GLN ASP ALA GLN TYR GLU LEU GLY TRP ALA SER GLU SEQRES 31 A 474 SER ALA LYS ALA GLY TYR LYS TYR TYR MET ASP ASN ASP SEQRES 32 A 474 VAL VAL LEU ASP GLU LEU PRO ILE LEU LYS TYR THR LYS SEQRES 33 A 474 GLU LYS SER LYS GLU PHE VAL SER ILE ASP THR ALA MET SEQRES 34 A 474 ARG ALA VAL VAL GLU GLU LYS ALA GLN GLN TRP ILE LEU SEQRES 35 A 474 GLY SER GLY ASP ILE ASP LYS GLU TRP ASP ALA TYR ILE SEQRES 36 A 474 LYS ARG LEU GLU ASN LEU GLY LEU SER LYS ALA GLU GLN SEQRES 37 A 474 ILE GLN ASN GLU ALA PHE SEQRES 1 B 474 MET LYS GLU THR THR ILE PHE ALA MET HIS LEU GLY LYS SEQRES 2 B 474 ALA LEU ASP PRO ASN LEU PRO VAL PHE VAL LYS ALA GLU SEQRES 3 B 474 LYS ASP THR ASN ILE LYS LEU VAL ASN VAL ALA SER GLN SEQRES 4 B 474 ASN GLN THR ASP GLN ILE GLN ALA TYR ASN LEU MET LEU SEQRES 5 B 474 THR GLU GLY LYS LEU PRO ASP ILE VAL SER TYR GLU LEU SEQRES 6 B 474 SER ALA ASP LEU GLU ASN LEU GLY ILE GLU GLY GLY LEU SEQRES 7 B 474 ILE PRO LEU GLU ASP LEU ILE ASN GLN HIS ALA PRO ASN SEQRES 8 B 474 LEU LYS LYS PHE PHE GLU GLU ASN PRO ARG TYR LYS LYS SEQRES 9 B 474 ASP ALA VAL ALA VAL ASP GLY HIS ILE TYR MET ILE PRO SEQRES 10 B 474 ASN TYR TYR ASP TYR PHE ASN ILE LYS VAL SER GLN GLY SEQRES 11 B 474 TYR PHE ILE ARG GLN ASP TRP LEU GLU LYS LEU GLY LEU SEQRES 12 B 474 LYS GLU PRO ARG THR VAL ASP GLU LEU TYR THR THR LEU SEQRES 13 B 474 LYS ALA PHE ARG GLU LYS ASP PRO ASN GLY ASN GLY LYS SEQRES 14 B 474 LYS ASP GLU VAL PRO PHE PHE VAL ARG ALA ASN ASN VAL SEQRES 15 B 474 ARG LYS VAL LEU THR SER LEU VAL ASP LEU PHE LYS ALA SEQRES 16 B 474 SER PRO ILE TRP TYR GLU GLU ASN GLY MET VAL LYS TYR SEQRES 17 B 474 GLY PRO ALA GLN LYS GLU PHE LYS HIS ALA ILE LYS GLU SEQRES 18 B 474 LEU SER LYS TRP TYR LYS GLU GLY LEU ILE ASP GLU GLU SEQRES 19 B 474 ILE PHE THR ARG GLY LEU GLU SER ARG ASP TYR LEU LEU SEQRES 20 B 474 SER ASN ASN LEU GLY GLY ALA THR ASP ASP TRP ILE ALA SEQRES 21 B 474 SER THR SER SER TYR ASN ARG ASN LEU ALA ASP LYS ILE SEQRES 22 B 474 PRO GLY PHE ASN LEU LYS LEU VAL LEU PRO TYR GLU LEU SEQRES 23 B 474 ASN GLY ASN ALA LYS THR ARG HIS ALA ARG THR THR TYR SEQRES 24 B 474 LEU GLY GLY TRP GLY ILE SER LYS ASP ALA LYS ASP PRO SEQRES 25 B 474 VAL SER LEU ILE LYS TYR PHE ASP TYR TRP TYR SER VAL SEQRES 26 B 474 GLU GLY ARG ARG LEU TRP ASN PHE GLY ILE GLU GLY SER SEQRES 27 B 474 GLU TYR THR LEU VAL ASP GLY LYS PRO VAL PHE THR ASP SEQRES 28 B 474 LYS VAL LEU LYS ASN PRO ASP GLY LYS THR PRO LEU ALA SEQRES 29 B 474 VAL LEU ARG GLU VAL GLY ALA GLN TYR ARG LEU GLY ALA SEQRES 30 B 474 PHE GLN ASP ALA GLN TYR GLU LEU GLY TRP ALA SER GLU SEQRES 31 B 474 SER ALA LYS ALA GLY TYR LYS TYR TYR MET ASP ASN ASP SEQRES 32 B 474 VAL VAL LEU ASP GLU LEU PRO ILE LEU LYS TYR THR LYS SEQRES 33 B 474 GLU LYS SER LYS GLU PHE VAL SER ILE ASP THR ALA MET SEQRES 34 B 474 ARG ALA VAL VAL GLU GLU LYS ALA GLN GLN TRP ILE LEU SEQRES 35 B 474 GLY SER GLY ASP ILE ASP LYS GLU TRP ASP ALA TYR ILE SEQRES 36 B 474 LYS ARG LEU GLU ASN LEU GLY LEU SER LYS ALA GLU GLN SEQRES 37 B 474 ILE GLN ASN GLU ALA PHE HET CA A 601 1 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 4 HET SO4 A 605 5 HET SO4 A 606 5 HET SO4 A 607 5 HET SO4 A 608 5 HET CA B 601 1 HET EDO B 602 4 HET EDO B 603 4 HET EDO B 604 4 HET EDO B 605 4 HET EDO B 606 4 HET SO4 B 607 5 HET SO4 B 608 5 HET SO4 B 609 5 HET TAR B 610 10 HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM TAR D(-)-TARTARIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CA 2(CA 2+) FORMUL 4 EDO 8(C2 H6 O2) FORMUL 7 SO4 7(O4 S 2-) FORMUL 20 TAR C4 H6 O6 FORMUL 21 HOH *769(H2 O) HELIX 1 AA1 LEU A 45 ASN A 56 1 12 HELIX 2 AA2 ASP A 69 THR A 79 1 11 HELIX 3 AA3 LEU A 91 GLU A 101 1 11 HELIX 4 AA4 LEU A 107 ALA A 115 1 9 HELIX 5 AA5 ALA A 115 ASN A 125 1 11 HELIX 6 AA6 ASN A 125 VAL A 133 1 9 HELIX 7 AA7 GLN A 161 LEU A 167 1 7 HELIX 8 AA8 THR A 174 LYS A 188 1 15 HELIX 9 AA9 ASN A 207 ASP A 217 1 11 HELIX 10 AB1 LEU A 218 LYS A 220 5 3 HELIX 11 AB2 GLN A 238 GLU A 254 1 17 HELIX 12 AB3 GLU A 267 ASN A 275 1 9 HELIX 13 AB4 ILE A 285 SER A 289 1 5 HELIX 14 AB5 SER A 290 ALA A 296 1 7 HELIX 15 AB6 ASP A 337 TRP A 348 1 12 HELIX 16 AB7 SER A 350 GLY A 360 1 11 HELIX 17 AB8 THR A 376 LYS A 381 1 6 HELIX 18 AB9 THR A 387 VAL A 395 1 9 HELIX 19 AC1 ASP A 406 GLY A 412 1 7 HELIX 20 AC2 SER A 415 ASN A 428 1 14 HELIX 21 AC3 THR A 441 LEU A 468 1 28 HELIX 22 AC4 ASP A 472 GLY A 488 1 17 HELIX 23 AC5 GLY A 488 PHE A 500 1 13 HELIX 24 AC6 LEU B 45 ASN B 56 1 12 HELIX 25 AC7 ASP B 69 LEU B 78 1 10 HELIX 26 AC8 LEU B 91 GLU B 101 1 11 HELIX 27 AC9 LEU B 107 ALA B 115 1 9 HELIX 28 AD1 ALA B 115 ASN B 125 1 11 HELIX 29 AD2 ASN B 125 VAL B 133 1 9 HELIX 30 AD3 GLN B 161 GLY B 168 1 8 HELIX 31 AD4 THR B 174 LYS B 188 1 15 HELIX 32 AD5 ASN B 207 ASP B 217 1 11 HELIX 33 AD6 LEU B 218 LYS B 220 5 3 HELIX 34 AD7 GLN B 238 GLU B 254 1 17 HELIX 35 AD8 GLU B 267 ASN B 275 1 9 HELIX 36 AD9 ILE B 285 SER B 289 1 5 HELIX 37 AE1 SER B 290 ALA B 296 1 7 HELIX 38 AE2 ASP B 337 TRP B 348 1 12 HELIX 39 AE3 SER B 350 GLY B 360 1 11 HELIX 40 AE4 THR B 376 LYS B 381 1 6 HELIX 41 AE5 THR B 387 VAL B 395 1 9 HELIX 42 AE6 ASP B 406 GLY B 412 1 7 HELIX 43 AE7 SER B 415 ASN B 428 1 14 HELIX 44 AE8 THR B 441 LEU B 468 1 28 HELIX 45 AE9 ASP B 472 GLY B 488 1 17 HELIX 46 AF1 GLY B 488 PHE B 500 1 13 SHEET 1 AA1 5 LYS A 58 ASN A 61 0 SHEET 2 AA1 5 GLU A 29 PHE A 33 1 N THR A 30 O LYS A 58 SHEET 3 AA1 5 ILE A 86 TYR A 89 1 O SER A 88 N PHE A 33 SHEET 4 AA1 5 TYR A 325 ILE A 331 -1 O GLY A 328 N TYR A 89 SHEET 5 AA1 5 ILE A 142 TYR A 145 -1 N ILE A 142 O TRP A 329 SHEET 1 AA2 2 MET A 35 HIS A 36 0 SHEET 2 AA2 2 LYS A 39 ALA A 40 -1 O LYS A 39 N HIS A 36 SHEET 1 AA3 4 VAL A 199 PHE A 202 0 SHEET 2 AA3 4 GLY A 278 TRP A 284 1 O ALA A 280 N PHE A 202 SHEET 3 AA3 4 GLN A 155 ARG A 160 -1 N GLY A 156 O ASP A 283 SHEET 4 AA3 4 LEU A 304 VAL A 307 -1 O LYS A 305 N ILE A 159 SHEET 1 AA4 2 TRP A 225 GLU A 228 0 SHEET 2 AA4 2 MET A 231 TYR A 234 -1 O MET A 231 N GLU A 228 SHEET 1 AA5 2 TYR A 366 VAL A 369 0 SHEET 2 AA5 2 LYS A 372 PHE A 375 -1 O LYS A 372 N VAL A 369 SHEET 1 AA6 5 LYS B 58 ASN B 61 0 SHEET 2 AA6 5 GLU B 29 PHE B 33 1 N THR B 30 O LYS B 58 SHEET 3 AA6 5 ILE B 86 TYR B 89 1 O SER B 88 N PHE B 33 SHEET 4 AA6 5 TYR B 325 ILE B 331 -1 O GLY B 330 N VAL B 87 SHEET 5 AA6 5 ILE B 142 TYR B 145 -1 N ILE B 142 O TRP B 329 SHEET 1 AA7 2 MET B 35 HIS B 36 0 SHEET 2 AA7 2 LYS B 39 ALA B 40 -1 O LYS B 39 N HIS B 36 SHEET 1 AA8 3 ALA B 280 TRP B 284 0 SHEET 2 AA8 3 GLN B 155 ARG B 160 -1 N GLY B 156 O ASP B 283 SHEET 3 AA8 3 LEU B 304 VAL B 307 -1 O LYS B 305 N ILE B 159 SHEET 1 AA9 2 TRP B 225 GLU B 228 0 SHEET 2 AA9 2 MET B 231 TYR B 234 -1 O LYS B 233 N TYR B 226 SHEET 1 AB1 2 TYR B 366 VAL B 369 0 SHEET 2 AB1 2 LYS B 372 PHE B 375 -1 O LYS B 372 N VAL B 369 LINK OD1 ASP A 189 CA CA A 601 1555 1555 2.28 LINK OD1 ASN A 191 CA CA A 601 1555 1555 2.27 LINK OD1 ASN A 193 CA CA A 601 1555 1555 2.51 LINK O LYS A 195 CA CA A 601 1555 1555 2.37 LINK OD1 ASP A 197 CA CA A 601 1555 1555 2.44 LINK OE1 GLU A 198 CA CA A 601 1555 1555 2.68 LINK OE2 GLU A 198 CA CA A 601 1555 1555 2.32 LINK OD1 ASP B 189 CA CA B 601 1555 1555 2.22 LINK OD1 ASN B 191 CA CA B 601 1555 1555 3.17 LINK OD1 ASN B 193 CA CA B 601 1555 1555 2.60 LINK O LYS B 195 CA CA B 601 1555 1555 2.53 LINK OD1 ASP B 197 CA CA B 601 1555 1555 2.40 LINK OE1 GLU B 198 CA CA B 601 1555 1555 2.78 LINK OE2 GLU B 198 CA CA B 601 1555 1555 2.40 SITE 1 AC1 6 ASP A 189 ASN A 191 ASN A 193 LYS A 195 SITE 2 AC1 6 ASP A 197 GLU A 198 SITE 1 AC2 2 LEU A 411 LYS A 423 SITE 1 AC3 7 LYS A 220 ALA A 221 TYR A 226 GLN A 238 SITE 2 AC3 7 GLU A 240 ARG A 319 HOH A 799 SITE 1 AC4 3 ARG A 209 PRO A 223 GLU A 460 SITE 1 AC5 5 GLU A 260 ARG A 264 TYR A 271 LYS B 442 SITE 2 AC5 5 LYS B 446 SITE 1 AC6 4 ASN A 207 ARG A 209 ARG A 456 HOH A 755 SITE 1 AC7 3 GLN A 65 HOH A 746 HOH A 773 SITE 1 AC8 3 HIS A 243 LYS A 246 HOH A 703 SITE 1 AC9 6 ASP B 189 ASN B 191 ASN B 193 LYS B 195 SITE 2 AC9 6 ASP B 197 GLU B 198 SITE 1 AD1 4 HOH A 754 ARG B 264 GLU B 267 TYR B 271 SITE 1 AD2 7 LYS B 220 ALA B 221 TYR B 226 GLN B 238 SITE 2 AD2 7 GLU B 240 ARG B 319 HOH B 772 SITE 1 AD3 6 GLU B 90 LEU B 91 SER B 92 TYR B 325 SITE 2 AD3 6 GLY B 327 HOH B 745 SITE 1 AD4 7 ARG B 127 TYR B 148 ALA B 321 ARG B 322 SITE 2 AD4 7 THR B 324 ASP B 433 GLU B 434 SITE 1 AD5 3 ASN B 191 ASN B 193 ASN B 276 SITE 1 AD6 6 LYS A 442 LYS A 446 ARG B 264 TYR B 271 SITE 2 AD6 6 HOH B 908 HOH B 924 SITE 1 AD7 2 HIS B 243 LYS B 246 SITE 1 AD8 4 SER B 64 GLN B 65 HOH B 747 HOH B 766 SITE 1 AD9 6 ARG B 204 ARG B 269 TRP B 284 SER B 287 SITE 2 AD9 6 HOH B 878 HOH B 963 CRYST1 73.674 142.050 73.676 90.00 105.98 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013573 0.000000 0.003886 0.00000 SCALE2 0.000000 0.007040 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014118 0.00000