HEADER OXIDOREDUCTASE/ELECTRON TRANSPORT 17-SEP-16 5GXG TITLE HIGH-RESOLUTION CRYSTAL STRUCTURE OF THE ELECTRON TRANSFER COMPLEX OF TITLE 2 CYTOCHROME P450CAM WITH PUTIDAREDOXIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMPHOR 5-MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYTOCHROME P450-CAM,CYTOCHROME P450CAM; COMPND 5 EC: 1.14.15.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PUTIDAREDOXIN; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: PDX; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 GENE: CAMC, CYP101; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 12 ORGANISM_TAXID: 303; SOURCE 13 GENE: CAMB; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS INTER-PROTEIN ELECTRON TRANSFER, OXIDOREDUCTASE-ELECTRON TRANSPORT KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIKUI,Y.HIRUMA,M.UBBINK,M.NOJIRI REVDAT 3 08-NOV-23 5GXG 1 LINK REVDAT 2 18-OCT-17 5GXG 1 JRNL REMARK REVDAT 1 18-JAN-17 5GXG 0 JRNL AUTH W.ANDRAOJC,Y.HIRUMA,W.M.LIU,E.RAVERA,M.NOJIRI,G.PARIGI, JRNL AUTH 2 C.LUCHINAT,M.UBBINK JRNL TITL IDENTIFICATION OF PRODUCTIVE AND FUTILE ENCOUNTERS IN AN JRNL TITL 2 ELECTRON TRANSFER PROTEIN COMPLEX JRNL REF PROC. NATL. ACAD. SCI. V. 114 E1840 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28223532 JRNL DOI 10.1073/PNAS.1616813114 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 48328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2579 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3469 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 189 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3970 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 294 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.024 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4165 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3905 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5678 ; 2.137 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8996 ; 0.996 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 512 ; 6.237 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 193 ;35.196 ;24.093 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 682 ;14.782 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;15.248 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 628 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4706 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 939 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2033 ; 2.403 ; 2.463 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2032 ; 2.402 ; 2.463 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2538 ; 3.220 ; 3.683 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2539 ; 3.220 ; 3.683 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2132 ; 3.955 ; 2.894 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2132 ; 3.949 ; 2.894 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3135 ; 5.724 ; 4.177 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4897 ; 6.817 ;20.715 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4792 ; 6.756 ;20.438 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5GXG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1300001643. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51169 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 61.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3W9C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 0.1M SODIUM CHLORIDE, 1.6M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.74500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.97800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.74500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.97800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -132.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -5.75810 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 59.69092 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 GLY A 0 REMARK 465 THR A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 THR A 4 REMARK 465 ILE A 5 REMARK 465 GLN A 6 REMARK 465 SER A 7 REMARK 465 ASN A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 92 REMARK 465 GLY A 93 REMARK 465 GLU A 94 REMARK 465 ALA A 95 REMARK 465 MET B -1 REMARK 465 GLY B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 782 O HOH A 799 1.93 REMARK 500 O HOH A 802 O HOH A 809 2.01 REMARK 500 O HOH B 326 O HOH B 363 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 171 CG GLU A 171 CD 0.090 REMARK 500 GLU A 279 CD GLU A 279 OE2 -0.067 REMARK 500 GLU A 331 CG GLU A 331 CD 0.095 REMARK 500 GLU A 331 CD GLU A 331 OE1 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 27 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 72 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 109 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 109 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 112 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 CYS A 126 CA - CB - SG ANGL. DEV. = 11.5 DEGREES REMARK 500 ARG A 161 CG - CD - NE ANGL. DEV. = -16.8 DEGREES REMARK 500 ARG A 161 CD - NE - CZ ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG A 161 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 188 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 271 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 291 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 291 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 299 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 299 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 304 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG B 12 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 30 63.28 -154.48 REMARK 500 PHE A 98 153.16 -12.52 REMARK 500 TYR A 154 -54.83 -131.80 REMARK 500 ARG A 186 67.62 -117.02 REMARK 500 LEU A 250 -65.64 -101.48 REMARK 500 LEU A 294 -2.87 -142.23 REMARK 500 ASP A 297 -161.57 -112.71 REMARK 500 CYS A 357 121.78 -38.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 357 SG REMARK 620 2 HEM A 501 NA 96.3 REMARK 620 3 HEM A 501 NB 88.4 89.8 REMARK 620 4 HEM A 501 NC 85.5 178.1 90.8 REMARK 620 5 HEM A 501 ND 93.9 90.1 177.7 89.2 REMARK 620 6 HOH A 653 O 172.0 91.5 89.5 86.7 88.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 201 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 39 SG REMARK 620 2 FES B 201 S1 112.1 REMARK 620 3 FES B 201 S2 109.8 103.5 REMARK 620 4 CYS B 45 SG 108.1 109.6 113.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 201 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 48 SG REMARK 620 2 FES B 201 S1 112.7 REMARK 620 3 FES B 201 S2 115.0 106.4 REMARK 620 4 CYS B 86 SG 102.9 106.6 113.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTT A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FES B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 DBREF 5GXG A 1 414 UNP P00183 CPXA_PSEPU 2 415 DBREF 5GXG B 1 106 UNP P00259 PUTX_PSEPU 2 107 SEQADV 5GXG MET A -1 UNP P00183 EXPRESSION TAG SEQADV 5GXG GLY A 0 UNP P00183 EXPRESSION TAG SEQADV 5GXG CYS A 126 UNP P00183 LYS 127 ENGINEERED MUTATION SEQADV 5GXG CYS A 130 UNP P00183 ARG 131 ENGINEERED MUTATION SEQADV 5GXG ALA A 334 UNP P00183 CYS 335 ENGINEERED MUTATION SEQADV 5GXG MET B -1 UNP P00259 EXPRESSION TAG SEQADV 5GXG GLY B 0 UNP P00259 EXPRESSION TAG SEQRES 1 A 416 MET GLY THR THR GLU THR ILE GLN SER ASN ALA ASN LEU SEQRES 2 A 416 ALA PRO LEU PRO PRO HIS VAL PRO GLU HIS LEU VAL PHE SEQRES 3 A 416 ASP PHE ASP MET TYR ASN PRO SER ASN LEU SER ALA GLY SEQRES 4 A 416 VAL GLN GLU ALA TRP ALA VAL LEU GLN GLU SER ASN VAL SEQRES 5 A 416 PRO ASP LEU VAL TRP THR ARG CYS ASN GLY GLY HIS TRP SEQRES 6 A 416 ILE ALA THR ARG GLY GLN LEU ILE ARG GLU ALA TYR GLU SEQRES 7 A 416 ASP TYR ARG HIS PHE SER SER GLU CYS PRO PHE ILE PRO SEQRES 8 A 416 ARG GLU ALA GLY GLU ALA TYR ASP PHE ILE PRO THR SER SEQRES 9 A 416 MET ASP PRO PRO GLU GLN ARG GLN PHE ARG ALA LEU ALA SEQRES 10 A 416 ASN GLN VAL VAL GLY MET PRO VAL VAL ASP CYS LEU GLU SEQRES 11 A 416 ASN CYS ILE GLN GLU LEU ALA CYS SER LEU ILE GLU SER SEQRES 12 A 416 LEU ARG PRO GLN GLY GLN CYS ASN PHE THR GLU ASP TYR SEQRES 13 A 416 ALA GLU PRO PHE PRO ILE ARG ILE PHE MET LEU LEU ALA SEQRES 14 A 416 GLY LEU PRO GLU GLU ASP ILE PRO HIS LEU LYS TYR LEU SEQRES 15 A 416 THR ASP GLN MET THR ARG PRO ASP GLY SER MET THR PHE SEQRES 16 A 416 ALA GLU ALA LYS GLU ALA LEU TYR ASP TYR LEU ILE PRO SEQRES 17 A 416 ILE ILE GLU GLN ARG ARG GLN LYS PRO GLY THR ASP ALA SEQRES 18 A 416 ILE SER ILE VAL ALA ASN GLY GLN VAL ASN GLY ARG PRO SEQRES 19 A 416 ILE THR SER ASP GLU ALA LYS ARG MET CYS GLY LEU LEU SEQRES 20 A 416 LEU VAL GLY GLY LEU ASP THR VAL VAL ASN PHE LEU SER SEQRES 21 A 416 PHE SER MET GLU PHE LEU ALA LYS SER PRO GLU HIS ARG SEQRES 22 A 416 GLN GLU LEU ILE GLU ARG PRO GLU ARG ILE PRO ALA ALA SEQRES 23 A 416 CYS GLU GLU LEU LEU ARG ARG PHE SER LEU VAL ALA ASP SEQRES 24 A 416 GLY ARG ILE LEU THR SER ASP TYR GLU PHE HIS GLY VAL SEQRES 25 A 416 GLN LEU LYS LYS GLY ASP GLN ILE LEU LEU PRO GLN MET SEQRES 26 A 416 LEU SER GLY LEU ASP GLU ARG GLU ASN ALA ALA PRO MET SEQRES 27 A 416 HIS VAL ASP PHE SER ARG GLN LYS VAL SER HIS THR THR SEQRES 28 A 416 PHE GLY HIS GLY SER HIS LEU CYS LEU GLY GLN HIS LEU SEQRES 29 A 416 ALA ARG ARG GLU ILE ILE VAL THR LEU LYS GLU TRP LEU SEQRES 30 A 416 THR ARG ILE PRO ASP PHE SER ILE ALA PRO GLY ALA GLN SEQRES 31 A 416 ILE GLN HIS LYS SER GLY ILE VAL SER GLY VAL GLN ALA SEQRES 32 A 416 LEU PRO LEU VAL TRP ASP PRO ALA THR THR LYS ALA VAL SEQRES 1 B 108 MET GLY SER LYS VAL VAL TYR VAL SER HIS ASP GLY THR SEQRES 2 B 108 ARG ARG GLU LEU ASP VAL ALA ASP GLY VAL SER LEU MET SEQRES 3 B 108 GLN ALA ALA VAL SER ASN GLY ILE TYR ASP ILE VAL GLY SEQRES 4 B 108 ASP CYS GLY GLY SER ALA SER CYS ALA THR CYS HIS VAL SEQRES 5 B 108 TYR VAL ASN GLU ALA PHE THR ASP LYS VAL PRO ALA ALA SEQRES 6 B 108 ASN GLU ARG GLU ILE GLY MET LEU GLU CYS VAL THR ALA SEQRES 7 B 108 GLU LEU LYS PRO ASN SER ARG LEU CYS CYS GLN ILE ILE SEQRES 8 B 108 MET THR PRO GLU LEU ASP GLY ILE VAL VAL ASP VAL PRO SEQRES 9 B 108 ASP ARG GLN TRP HET HEM A 501 43 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET DTT A 506 8 HET FES B 201 4 HET SO4 B 202 5 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM SO4 SULFATE ION HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETSYN HEM HEME HETSYN DTT 1,4-DITHIOTHREITOL FORMUL 3 HEM C34 H32 FE N4 O4 FORMUL 4 SO4 5(O4 S 2-) FORMUL 8 DTT C4 H10 O2 S2 FORMUL 9 FES FE2 S2 FORMUL 11 HOH *294(H2 O) HELIX 1 AA1 PRO A 19 VAL A 23 5 5 HELIX 2 AA2 ASN A 33 ALA A 36 5 4 HELIX 3 AA3 GLY A 37 ALA A 43 1 7 HELIX 4 AA4 VAL A 44 GLU A 47 5 4 HELIX 5 AA5 ARG A 57 GLY A 61 5 5 HELIX 6 AA6 ARG A 67 GLU A 76 1 10 HELIX 7 AA7 PRO A 106 GLY A 120 1 15 HELIX 8 AA8 GLY A 120 ARG A 143 1 24 HELIX 9 AA9 PHE A 150 TYR A 154 1 5 HELIX 10 AB1 GLU A 156 GLY A 168 1 13 HELIX 11 AB2 PRO A 170 GLU A 172 5 3 HELIX 12 AB3 ASP A 173 ARG A 186 1 14 HELIX 13 AB4 THR A 192 LYS A 214 1 23 HELIX 14 AB5 ASP A 218 ASN A 225 1 8 HELIX 15 AB6 THR A 234 GLY A 249 1 16 HELIX 16 AB7 LEU A 250 SER A 267 1 18 HELIX 17 AB8 SER A 267 ARG A 277 1 11 HELIX 18 AB9 ARG A 280 PHE A 292 1 13 HELIX 19 AC1 PRO A 321 ASP A 328 5 8 HELIX 20 AC2 HIS A 352 LEU A 356 5 5 HELIX 21 AC3 GLY A 359 ILE A 378 1 20 HELIX 22 AC4 ASP A 407 THR A 411 5 5 HELIX 23 AC5 SER B 22 ASN B 30 1 9 HELIX 24 AC6 ASN B 64 GLU B 72 1 9 HELIX 25 AC7 CYS B 86 ILE B 88 5 3 HELIX 26 AC8 THR B 91 ASP B 95 5 5 SHEET 1 AA1 5 LEU A 53 THR A 56 0 SHEET 2 AA1 5 HIS A 62 ALA A 65 -1 O HIS A 62 N THR A 56 SHEET 3 AA1 5 GLN A 317 LEU A 319 1 O LEU A 319 N TRP A 63 SHEET 4 AA1 5 GLY A 298 LEU A 301 -1 N ARG A 299 O ILE A 318 SHEET 5 AA1 5 PHE A 81 SER A 82 -1 N SER A 82 O ILE A 300 SHEET 1 AA2 3 GLN A 147 ASN A 149 0 SHEET 2 AA2 3 PRO A 403 VAL A 405 -1 O LEU A 404 N CYS A 148 SHEET 3 AA2 3 SER A 382 ILE A 383 -1 N SER A 382 O VAL A 405 SHEET 1 AA3 2 GLN A 227 VAL A 228 0 SHEET 2 AA3 2 ARG A 231 PRO A 232 -1 O ARG A 231 N VAL A 228 SHEET 1 AA4 2 TYR A 305 PHE A 307 0 SHEET 2 AA4 2 VAL A 310 LEU A 312 -1 O VAL A 310 N PHE A 307 SHEET 1 AA5 2 HIS A 391 LYS A 392 0 SHEET 2 AA5 2 GLY A 398 VAL A 399 -1 O GLY A 398 N LYS A 392 SHEET 1 AA6 5 ARG B 12 ASP B 16 0 SHEET 2 AA6 5 LYS B 2 VAL B 6 -1 N TYR B 5 O ARG B 13 SHEET 3 AA6 5 ILE B 97 ASP B 100 1 O ILE B 97 N VAL B 4 SHEET 4 AA6 5 HIS B 49 VAL B 52 -1 N TYR B 51 O ASP B 100 SHEET 5 AA6 5 SER B 82 LEU B 84 -1 O ARG B 83 N VAL B 50 LINK SG CYS A 357 FE HEM A 501 1555 1555 2.26 LINK FE HEM A 501 O HOH A 653 1555 1555 2.14 LINK SG CYS B 39 FE1 FES B 201 1555 1555 2.30 LINK SG CYS B 45 FE1 FES B 201 1555 1555 2.33 LINK SG CYS B 48 FE2 FES B 201 1555 1555 2.31 LINK SG CYS B 86 FE2 FES B 201 1555 1555 2.31 CISPEP 1 ILE A 88 PRO A 89 0 -5.08 CISPEP 2 ILE A 99 PRO A 100 0 8.86 CISPEP 3 PRO A 105 PRO A 106 0 10.11 SITE 1 AC1 22 PRO A 100 GLN A 108 ARG A 112 LEU A 245 SITE 2 AC1 22 GLY A 248 GLY A 249 THR A 252 ASP A 297 SITE 3 AC1 22 ARG A 299 GLN A 322 THR A 349 PHE A 350 SITE 4 AC1 22 GLY A 351 HIS A 355 CYS A 357 LEU A 358 SITE 5 AC1 22 GLY A 359 DTT A 506 HOH A 638 HOH A 649 SITE 6 AC1 22 HOH A 653 HOH A 670 SITE 1 AC2 5 SER A 267 PRO A 268 GLU A 269 HIS A 270 SITE 2 AC2 5 ARG A 277 SITE 1 AC3 5 ALA A 334 PRO A 335 MET A 336 HIS A 337 SITE 2 AC3 5 HOH A 747 SITE 1 AC4 4 PRO A 19 GLU A 20 HIS A 21 ARG A 271 SITE 1 AC5 5 PRO A 15 PRO A 16 HIS A 17 GLU A 269 SITE 2 AC5 5 LYS A 313 SITE 1 AC6 6 THR A 101 THR A 252 ASP A 297 HEM A 501 SITE 2 AC6 6 HOH A 649 HOH A 653 SITE 1 AC7 9 GLY B 37 CYS B 39 GLY B 41 ALA B 43 SITE 2 AC7 9 SER B 44 CYS B 45 ALA B 46 CYS B 48 SITE 3 AC7 9 CYS B 86 SITE 1 AC8 5 HIS B 8 ALA B 76 GLU B 77 ASP B 103 SITE 2 AC8 5 ARG B 104 CRYST1 101.490 77.956 59.968 90.00 95.51 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009853 0.000000 0.000950 0.00000 SCALE2 0.000000 0.012828 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016753 0.00000