HEADER HYDROLASE 18-SEP-16 5GXJ TITLE ZIKA VIRUS NS2B-NS3 PROTEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVIVIRUS_NS2B,LINKER,PEPTIDASE S7; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1420-1464,UNP RESIDUES 1503-1672; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS, SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 64320, 32630; SOURCE 4 STRAIN: MR 766; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS APO-STATE, ZIKA VIRUS, PROTEASE, ACTIVATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.YANG,X.CHEN,X.JI,Y.XIONG,K.YANG REVDAT 1 03-MAY-17 5GXJ 0 JRNL AUTH H.YANG,X.CHEN,X.JI,Y.XIONG,K.YANG,C.WU JRNL TITL VIRAL PROTEASE ACTIVATION MECHANISM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 672 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 862 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.4670 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.4510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2459 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 104.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.55000 REMARK 3 B22 (A**2) : 0.55000 REMARK 3 B33 (A**2) : -1.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.619 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.325 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.382 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 45.728 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2511 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2377 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3406 ; 2.002 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5464 ; 1.117 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 318 ; 7.455 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;32.637 ;23.585 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 408 ;19.961 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;24.914 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 373 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2846 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 560 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1284 ; 3.447 ; 5.818 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1283 ; 3.449 ; 5.815 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1598 ; 5.406 ; 8.701 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1599 ; 5.404 ; 8.704 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1227 ; 3.589 ; 6.240 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1228 ; 3.587 ; 6.242 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1809 ; 5.754 ; 9.191 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 10265 ;10.603 ;54.869 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 10266 ;10.602 ;54.872 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 1158 REMARK 3 ORIGIN FOR THE GROUP (A): -2.3146 21.8781 -25.6647 REMARK 3 T TENSOR REMARK 3 T11: 0.1169 T22: 0.6870 REMARK 3 T33: 0.0578 T12: -0.0208 REMARK 3 T13: -0.0262 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 5.8761 L22: 3.5036 REMARK 3 L33: 3.7124 L12: -0.0108 REMARK 3 L13: 0.3117 L23: 0.1657 REMARK 3 S TENSOR REMARK 3 S11: 0.0830 S12: -0.7865 S13: 0.2961 REMARK 3 S21: 0.2460 S22: -0.0669 S23: -0.3582 REMARK 3 S31: -0.3227 S32: -0.0432 S33: -0.0160 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 48 B 1158 REMARK 3 ORIGIN FOR THE GROUP (A): -6.3144 27.9896 -52.9046 REMARK 3 T TENSOR REMARK 3 T11: 0.6563 T22: 0.5078 REMARK 3 T33: 0.0602 T12: 0.0606 REMARK 3 T13: 0.0979 T23: 0.0379 REMARK 3 L TENSOR REMARK 3 L11: 3.7040 L22: 4.5506 REMARK 3 L33: 6.8328 L12: -0.8097 REMARK 3 L13: 0.4588 L23: -3.3525 REMARK 3 S TENSOR REMARK 3 S11: -0.0517 S12: 0.1879 S13: 0.2121 REMARK 3 S21: -0.5726 S22: -0.1071 S23: -0.4640 REMARK 3 S31: -0.5471 S32: 0.0705 S33: 0.1587 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5GXJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1300001604. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12503 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, 0.05 M CALCIUM REMARK 280 CHLORIDE DIHYDRATE, 30% POLYETHYLENE GLYCOL MONOMETHYL ETHER 550, REMARK 280 PH 6.5, MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 125.06750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 27.60300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 27.60300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.53375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 27.60300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 27.60300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 187.60125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 27.60300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 27.60300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 62.53375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 27.60300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 27.60300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 187.60125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 125.06750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 48 REMARK 465 VAL A 49 REMARK 465 GLY A 69 REMARK 465 ASN A 70 REMARK 465 SER A 71 REMARK 465 PRO A 72 REMARK 465 ARG A 73 REMARK 465 LEU A 74 REMARK 465 ASP A 75 REMARK 465 VAL A 76 REMARK 465 ALA A 77 REMARK 465 LEU A 78 REMARK 465 ASP A 79 REMARK 465 GLU A 80 REMARK 465 SER A 81 REMARK 465 GLY A 82 REMARK 465 ASP A 83 REMARK 465 PHE A 84 REMARK 465 SER A 85 REMARK 465 LEU A 86 REMARK 465 VAL A 87 REMARK 465 GLU A 88 REMARK 465 ASP A 89 REMARK 465 ASP A 90 REMARK 465 GLY A 91 REMARK 465 PRO A 92 REMARK 465 GLY A 93 REMARK 465 GLY A 94 REMARK 465 GLY A 95 REMARK 465 GLY A 96 REMARK 465 SER A 97 REMARK 465 GLY A 98 REMARK 465 GLY A 99 REMARK 465 GLY A 100 REMARK 465 GLY A 101 REMARK 465 SER A 1001 REMARK 465 GLY A 1002 REMARK 465 ALA A 1003 REMARK 465 LEU A 1004 REMARK 465 TRP A 1005 REMARK 465 ASP A 1006 REMARK 465 VAL A 1007 REMARK 465 PRO A 1008 REMARK 465 ALA A 1009 REMARK 465 PRO A 1010 REMARK 465 LYS A 1011 REMARK 465 GLU A 1012 REMARK 465 VAL A 1013 REMARK 465 LYS A 1014 REMARK 465 LYS A 1015 REMARK 465 GLY A 1016 REMARK 465 GLU A 1017 REMARK 465 GLY A 1159 REMARK 465 SER A 1160 REMARK 465 TYR A 1161 REMARK 465 VAL A 1162 REMARK 465 SER A 1163 REMARK 465 ALA A 1164 REMARK 465 ILE A 1165 REMARK 465 THR A 1166 REMARK 465 GLN A 1167 REMARK 465 GLY A 1168 REMARK 465 ARG A 1169 REMARK 465 ARG A 1170 REMARK 465 GLY B 69 REMARK 465 ASN B 70 REMARK 465 SER B 71 REMARK 465 PRO B 72 REMARK 465 ARG B 73 REMARK 465 LEU B 74 REMARK 465 ASP B 75 REMARK 465 VAL B 76 REMARK 465 ALA B 77 REMARK 465 LEU B 78 REMARK 465 ASP B 79 REMARK 465 GLU B 80 REMARK 465 SER B 81 REMARK 465 GLY B 82 REMARK 465 ASP B 83 REMARK 465 PHE B 84 REMARK 465 SER B 85 REMARK 465 LEU B 86 REMARK 465 VAL B 87 REMARK 465 GLU B 88 REMARK 465 ASP B 89 REMARK 465 ASP B 90 REMARK 465 GLY B 91 REMARK 465 PRO B 92 REMARK 465 GLY B 93 REMARK 465 GLY B 94 REMARK 465 GLY B 95 REMARK 465 GLY B 96 REMARK 465 SER B 97 REMARK 465 GLY B 98 REMARK 465 GLY B 99 REMARK 465 GLY B 100 REMARK 465 GLY B 101 REMARK 465 SER B 1001 REMARK 465 GLY B 1002 REMARK 465 ALA B 1003 REMARK 465 LEU B 1004 REMARK 465 TRP B 1005 REMARK 465 ASP B 1006 REMARK 465 VAL B 1007 REMARK 465 PRO B 1008 REMARK 465 ALA B 1009 REMARK 465 PRO B 1010 REMARK 465 LYS B 1011 REMARK 465 GLU B 1012 REMARK 465 VAL B 1013 REMARK 465 LYS B 1014 REMARK 465 LYS B 1015 REMARK 465 GLY B 1016 REMARK 465 GLU B 1017 REMARK 465 GLY B 1159 REMARK 465 SER B 1160 REMARK 465 TYR B 1161 REMARK 465 VAL B 1162 REMARK 465 SER B 1163 REMARK 465 ALA B 1164 REMARK 465 ILE B 1165 REMARK 465 THR B 1166 REMARK 465 GLN B 1167 REMARK 465 GLY B 1168 REMARK 465 ARG B 1169 REMARK 465 ARG B 1170 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 1024 O GLU B 1104 2.16 REMARK 500 NH2 ARG A 1024 O GLU A 1104 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A1071 CB - CG - OD2 ANGL. DEV. = 8.2 DEGREES REMARK 500 VAL A1072 CG1 - CB - CG2 ANGL. DEV. = -10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A1031 -123.25 -83.04 REMARK 500 CYS A1080 -19.81 81.60 REMARK 500 HIS A1092 -12.12 -140.15 REMARK 500 ASP A1120 76.11 -161.74 REMARK 500 ASP B 50 115.74 -161.92 REMARK 500 LEU B1030 -97.54 69.23 REMARK 500 ASP B1075 56.11 74.71 REMARK 500 CYS B1080 -16.15 80.49 REMARK 500 HIS B1092 -16.11 -141.33 REMARK 500 ASP B1120 72.19 -162.48 REMARK 500 REMARK 500 REMARK: NULL DBREF 5GXJ A 48 92 UNP H9A910 H9A910_ZIKV 1420 1464 DBREF 5GXJ A 93 101 PDB 5GXJ 5GXJ 93 101 DBREF 5GXJ A 1001 1170 UNP H9A910 H9A910_ZIKV 1503 1672 DBREF 5GXJ B 48 92 UNP H9A910 H9A910_ZIKV 1420 1464 DBREF 5GXJ B 93 101 PDB 5GXJ 5GXJ 93 101 DBREF 5GXJ B 1001 1170 UNP H9A910 H9A910_ZIKV 1503 1672 SEQRES 1 A 224 SER VAL ASP MET TYR ILE GLU ARG ALA GLY ASP ILE THR SEQRES 2 A 224 TRP GLU LYS ASP ALA GLU VAL THR GLY ASN SER PRO ARG SEQRES 3 A 224 LEU ASP VAL ALA LEU ASP GLU SER GLY ASP PHE SER LEU SEQRES 4 A 224 VAL GLU ASP ASP GLY PRO GLY GLY GLY GLY SER GLY GLY SEQRES 5 A 224 GLY GLY SER GLY ALA LEU TRP ASP VAL PRO ALA PRO LYS SEQRES 6 A 224 GLU VAL LYS LYS GLY GLU THR THR ASP GLY VAL TYR ARG SEQRES 7 A 224 VAL MET THR ARG ARG LEU LEU GLY SER THR GLN VAL GLY SEQRES 8 A 224 VAL GLY VAL MET GLN GLU GLY VAL PHE HIS THR MET TRP SEQRES 9 A 224 HIS VAL THR LYS GLY SER ALA LEU ARG SER GLY GLU GLY SEQRES 10 A 224 ARG LEU ASP PRO TYR TRP GLY ASP VAL LYS GLN ASP LEU SEQRES 11 A 224 VAL SER TYR CYS GLY PRO TRP LYS LEU ASP ALA ALA TRP SEQRES 12 A 224 ASP GLY HIS SER GLU VAL GLN LEU LEU ALA VAL PRO PRO SEQRES 13 A 224 GLY GLU ARG ALA ARG ASN ILE GLN THR LEU PRO GLY ILE SEQRES 14 A 224 PHE LYS THR LYS ASP GLY ASP ILE GLY ALA VAL ALA LEU SEQRES 15 A 224 ASP TYR PRO ALA GLY THR SER GLY SER PRO ILE LEU ASP SEQRES 16 A 224 LYS CYS GLY ARG VAL ILE GLY LEU TYR GLY ASN GLY VAL SEQRES 17 A 224 VAL ILE LYS ASN GLY SER TYR VAL SER ALA ILE THR GLN SEQRES 18 A 224 GLY ARG ARG SEQRES 1 B 224 SER VAL ASP MET TYR ILE GLU ARG ALA GLY ASP ILE THR SEQRES 2 B 224 TRP GLU LYS ASP ALA GLU VAL THR GLY ASN SER PRO ARG SEQRES 3 B 224 LEU ASP VAL ALA LEU ASP GLU SER GLY ASP PHE SER LEU SEQRES 4 B 224 VAL GLU ASP ASP GLY PRO GLY GLY GLY GLY SER GLY GLY SEQRES 5 B 224 GLY GLY SER GLY ALA LEU TRP ASP VAL PRO ALA PRO LYS SEQRES 6 B 224 GLU VAL LYS LYS GLY GLU THR THR ASP GLY VAL TYR ARG SEQRES 7 B 224 VAL MET THR ARG ARG LEU LEU GLY SER THR GLN VAL GLY SEQRES 8 B 224 VAL GLY VAL MET GLN GLU GLY VAL PHE HIS THR MET TRP SEQRES 9 B 224 HIS VAL THR LYS GLY SER ALA LEU ARG SER GLY GLU GLY SEQRES 10 B 224 ARG LEU ASP PRO TYR TRP GLY ASP VAL LYS GLN ASP LEU SEQRES 11 B 224 VAL SER TYR CYS GLY PRO TRP LYS LEU ASP ALA ALA TRP SEQRES 12 B 224 ASP GLY HIS SER GLU VAL GLN LEU LEU ALA VAL PRO PRO SEQRES 13 B 224 GLY GLU ARG ALA ARG ASN ILE GLN THR LEU PRO GLY ILE SEQRES 14 B 224 PHE LYS THR LYS ASP GLY ASP ILE GLY ALA VAL ALA LEU SEQRES 15 B 224 ASP TYR PRO ALA GLY THR SER GLY SER PRO ILE LEU ASP SEQRES 16 B 224 LYS CYS GLY ARG VAL ILE GLY LEU TYR GLY ASN GLY VAL SEQRES 17 B 224 VAL ILE LYS ASN GLY SER TYR VAL SER ALA ILE THR GLN SEQRES 18 B 224 GLY ARG ARG HELIX 1 AA1 MET A 1049 LYS A 1054 1 6 HELIX 2 AA2 MET B 1049 LYS B 1054 1 6 SHEET 1 AA1 6 MET A 51 GLY A 57 0 SHEET 2 AA1 6 GLY A1021 ARG A1028 -1 O VAL A1022 N ALA A 56 SHEET 3 AA1 6 SER A1033 GLN A1042 -1 O GLY A1037 N VAL A1025 SHEET 4 AA1 6 VAL A1045 THR A1048 -1 O VAL A1045 N GLN A1042 SHEET 5 AA1 6 LEU A1076 TYR A1079 -1 O TYR A1079 N PHE A1046 SHEET 6 AA1 6 PRO A1067 ASP A1071 -1 N TRP A1069 O SER A1078 SHEET 1 AA2 2 LEU A1058 SER A1060 0 SHEET 2 AA2 2 GLY A1063 LEU A1065 -1 O LEU A1065 N LEU A1058 SHEET 1 AA3 5 ARG A1107 THR A1111 0 SHEET 2 AA3 5 VAL A1095 ALA A1099 -1 N LEU A1097 O ILE A1109 SHEET 3 AA3 5 PRO A1138 LEU A1140 -1 O LEU A1140 N GLN A1096 SHEET 4 AA3 5 VAL A1146 LEU A1149 -1 O GLY A1148 N ILE A1139 SHEET 5 AA3 5 GLY A1153 VAL A1154 -1 N GLY A1153 O LEU A1149 SHEET 1 AA4 2 GLY A1114 LYS A1117 0 SHEET 2 AA4 2 ASP A1122 ALA A1125 -1 O ILE A1123 N PHE A1116 SHEET 1 AA5 6 VAL B 49 GLY B 57 0 SHEET 2 AA5 6 GLY B1021 ARG B1029 -1 O VAL B1022 N ALA B 56 SHEET 3 AA5 6 THR B1034 GLN B1042 -1 O GLY B1037 N VAL B1025 SHEET 4 AA5 6 VAL B1045 THR B1048 -1 O HIS B1047 N VAL B1040 SHEET 5 AA5 6 LEU B1076 TYR B1079 -1 O TYR B1079 N PHE B1046 SHEET 6 AA5 6 PRO B1067 ASP B1071 -1 N TRP B1069 O SER B1078 SHEET 1 AA6 2 LEU B1058 SER B1060 0 SHEET 2 AA6 2 GLY B1063 LEU B1065 -1 O GLY B1063 N SER B1060 SHEET 1 AA7 4 ARG B1107 THR B1111 0 SHEET 2 AA7 4 VAL B1095 ALA B1099 -1 N LEU B1097 O ILE B1109 SHEET 3 AA7 4 PRO B1138 LEU B1140 -1 O LEU B1140 N GLN B1096 SHEET 4 AA7 4 VAL B1146 LEU B1149 -1 O GLY B1148 N ILE B1139 SHEET 1 AA8 2 GLY B1114 LYS B1117 0 SHEET 2 AA8 2 ASP B1122 ALA B1125 -1 O ILE B1123 N PHE B1116 SSBOND 1 CYS A 1143 CYS B 1143 1555 3555 2.77 CISPEP 1 ASP A 1120 GLY A 1121 0 3.05 CISPEP 2 ASP B 1120 GLY B 1121 0 2.81 CRYST1 55.206 55.206 250.135 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018114 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018114 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003998 0.00000