HEADER HYDROLASE 21-SEP-16 5GY6 TITLE RIBONUCLEASE FROM HERICIUM ERINACEUS (RNASE HE1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE T1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 25-124; COMPND 5 EC: 3.1.27.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HERICIUM ERINACEUS; SOURCE 3 ORGANISM_COMMON: LION'S MANE MUSHROOM; SOURCE 4 ORGANISM_TAXID: 91752; SOURCE 5 GENE: RNHE1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS RIBONUCLEASE, ZINC, INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.KOBAYASHI,T.SANGAWA,K.TAKEBE,T.ITAGAKI,N.MOTOYOSHI,M.SUZUKI REVDAT 2 08-NOV-23 5GY6 1 REMARK REVDAT 1 27-SEP-17 5GY6 0 JRNL AUTH H.KOBAYASHI,T.SANGAWA,K.TAKEBE,T.ITAGAKI,N.MOTOYOSHI, JRNL AUTH 2 M.SUZUKI JRNL TITL RIBONUCLEASE FROM HERICIUM ERINACEUS (RNASE HE1) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.9670 - 2.5647 1.00 2753 123 0.1694 0.1729 REMARK 3 2 2.5647 - 2.0358 1.00 2598 146 0.1784 0.2246 REMARK 3 3 2.0358 - 1.7784 1.00 2565 140 0.1684 0.2019 REMARK 3 4 1.7784 - 1.6158 1.00 2575 131 0.1745 0.2007 REMARK 3 5 1.6158 - 1.5000 1.00 2507 162 0.1784 0.2163 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 727 REMARK 3 ANGLE : 1.240 989 REMARK 3 CHIRALITY : 0.064 91 REMARK 3 PLANARITY : 0.008 140 REMARK 3 DIHEDRAL : 16.036 419 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5502 15.4713 7.2763 REMARK 3 T TENSOR REMARK 3 T11: 0.1356 T22: 0.1109 REMARK 3 T33: 0.1204 T12: -0.0158 REMARK 3 T13: 0.0182 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 5.5819 L22: 5.0124 REMARK 3 L33: 2.6404 L12: 0.8669 REMARK 3 L13: 1.9088 L23: 3.4111 REMARK 3 S TENSOR REMARK 3 S11: -0.0494 S12: 0.1812 S13: 0.5440 REMARK 3 S21: -0.3608 S22: -0.0191 S23: -0.1526 REMARK 3 S31: -0.4551 S32: -0.0357 S33: 0.0625 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1437 2.4388 7.2730 REMARK 3 T TENSOR REMARK 3 T11: 0.0877 T22: 0.1056 REMARK 3 T33: 0.0998 T12: 0.0057 REMARK 3 T13: -0.0105 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 3.5003 L22: 4.5608 REMARK 3 L33: 2.3484 L12: -0.6862 REMARK 3 L13: 0.8784 L23: -1.5027 REMARK 3 S TENSOR REMARK 3 S11: 0.1143 S12: 0.0100 S13: -0.1356 REMARK 3 S21: 0.0705 S22: 0.0490 S23: 0.2654 REMARK 3 S31: 0.0767 S32: -0.1600 S33: -0.0955 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3078 1.7733 10.6212 REMARK 3 T TENSOR REMARK 3 T11: 0.0902 T22: 0.1509 REMARK 3 T33: 0.1539 T12: -0.0275 REMARK 3 T13: 0.0018 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 5.5857 L22: 2.1104 REMARK 3 L33: 1.9560 L12: -2.1272 REMARK 3 L13: 0.8640 L23: 0.1260 REMARK 3 S TENSOR REMARK 3 S11: -0.0020 S12: -0.2836 S13: -0.3584 REMARK 3 S21: 0.1250 S22: -0.0038 S23: 0.4419 REMARK 3 S31: 0.0880 S32: -0.3865 S33: -0.0086 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3735 6.7674 10.3900 REMARK 3 T TENSOR REMARK 3 T11: 0.0804 T22: 0.0920 REMARK 3 T33: 0.0627 T12: -0.0009 REMARK 3 T13: -0.0048 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 1.8482 L22: 3.4563 REMARK 3 L33: 2.4474 L12: 0.1454 REMARK 3 L13: -0.5071 L23: 0.9854 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: 0.0146 S13: 0.0010 REMARK 3 S21: 0.0100 S22: 0.0074 S23: 0.0337 REMARK 3 S31: 0.0481 S32: 0.0080 S33: -0.0199 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5GY6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1300001669. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13702 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 34.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3WHO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 31% PEG-MME 550, 0.1M MES PH 7.0, 5MM REMARK 280 ZNSO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 15.85050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.09150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.47250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 30.09150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 15.85050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.47250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 70 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 SER A 2 REMARK 465 GLU A 40 REMARK 465 GLY A 41 REMARK 465 PHE A 42 REMARK 465 SER A 43 REMARK 465 PRO A 45 REMARK 465 SER A 46 REMARK 465 ALA A 89 REMARK 465 SER A 90 REMARK 465 THR A 91 REMARK 465 GLU A 92 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 27 CD NE CZ NH1 NH2 REMARK 470 GLN A 35 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 317 O HOH A 326 1.80 REMARK 500 O TYR A 39 O HOH A 301 1.98 REMARK 500 O HOH A 342 O HOH A 406 2.06 REMARK 500 O HOH A 301 O HOH A 407 2.13 REMARK 500 O HOH A 356 O HOH A 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 400 O HOH A 411 1455 2.10 REMARK 500 O HOH A 317 O HOH A 376 3645 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 71 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 8 -130.17 50.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 34 ND1 REMARK 620 2 HIS A 37 NE2 124.2 REMARK 620 3 GLU A 53 OE1 99.4 129.7 REMARK 620 4 GLU A 53 OE2 114.0 82.0 56.0 REMARK 620 5 PHE A 100 O 135.3 100.2 39.2 63.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 DBREF 5GY6 A 1 100 UNP B1Q4V2 B1Q4V2_HERER 25 124 SEQRES 1 A 100 GLN SER GLY GLY CYS SER CYS ALA GLY ARG SER TYR SER SEQRES 2 A 100 SER SER ASN ILE ALA ASP ALA ILE ASP GLN ALA GLU GLY SEQRES 3 A 100 ARG GLY GLY GLY ASP TYR PRO HIS GLN TYR HIS ASP TYR SEQRES 4 A 100 GLU GLY PHE SER PHE PRO SER CYS ARG GLY GLU PHE PHE SEQRES 5 A 100 GLU TYR PRO LEU GLU ARG SER GLY VAL TYR THR GLY GLY SEQRES 6 A 100 SER PRO GLY ALA ASP ARG VAL ILE TYR ASP GLU ASP GLY SEQRES 7 A 100 ASP PHE CYS ALA CYS LEU THR HIS THR GLY ALA SER THR SEQRES 8 A 100 GLU ASP GLY PHE VAL GLU CYS ASN PHE HET ZN A 201 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ FORMUL 3 HOH *120(H2 O) HELIX 1 AA1 SER A 13 GLY A 26 1 14 SHEET 1 AA1 2 CYS A 5 CYS A 7 0 SHEET 2 AA1 2 ARG A 10 TYR A 12 -1 O ARG A 10 N CYS A 7 SHEET 1 AA2 5 HIS A 34 GLN A 35 0 SHEET 2 AA2 5 PHE A 51 PRO A 55 -1 O GLU A 53 N HIS A 34 SHEET 3 AA2 5 ASP A 70 ASP A 75 -1 O TYR A 74 N PHE A 52 SHEET 4 AA2 5 PHE A 80 THR A 87 -1 O CYS A 81 N ILE A 73 SHEET 5 AA2 5 GLY A 94 GLU A 97 -1 O VAL A 96 N THR A 85 SSBOND 1 CYS A 5 CYS A 83 1555 1555 2.00 SSBOND 2 CYS A 7 CYS A 98 1555 1555 2.03 SSBOND 3 CYS A 47 CYS A 81 1555 1555 2.03 LINK ND1 HIS A 34 ZN ZN A 201 1555 1555 2.07 LINK NE2 HIS A 37 ZN ZN A 201 1555 1555 2.10 LINK OE1 GLU A 53 ZN ZN A 201 1555 1555 2.50 LINK OE2 GLU A 53 ZN ZN A 201 1555 1555 2.02 LINK O PHE A 100 ZN ZN A 201 1555 3655 1.99 CISPEP 1 GLY A 3 GLY A 4 0 1.04 CISPEP 2 TYR A 32 PRO A 33 0 5.41 SITE 1 AC1 4 HIS A 34 HIS A 37 GLU A 53 PHE A 100 CRYST1 31.701 42.945 60.183 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031545 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023286 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016616 0.00000