HEADER HYDROLASE 02-OCT-16 5H01 TITLE THE CRYSTAL STRUCTURE OF D-2-HALACID DEHALOGENASE MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: (R)-2-HALOACID DEHALOGENASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: D-2-HALOACID DEHALOGENASE,D-DEX; COMPND 5 EC: 3.8.1.9; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 GENE: HADD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS DEHALOGENATION, D-2-HALOACID DEHALOGENASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.XUE,Y.WANG REVDAT 2 08-NOV-23 5H01 1 REMARK REVDAT 1 04-OCT-17 5H01 0 JRNL AUTH S.XUE,Y.WANG JRNL TITL THE CRYSTAL STRUCTURE OF D-2-HALACID DEHALOGENASE MUTANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 74968 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.256 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.312 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3776 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6024 - 6.5773 0.97 2780 148 0.2363 0.2624 REMARK 3 2 6.5773 - 5.2226 0.99 2759 159 0.2483 0.2965 REMARK 3 3 5.2226 - 4.5630 1.00 2785 155 0.2188 0.2910 REMARK 3 4 4.5630 - 4.1460 1.00 2789 137 0.2147 0.2666 REMARK 3 5 4.1460 - 3.8490 1.00 2752 140 0.2252 0.3124 REMARK 3 6 3.8490 - 3.6221 1.00 2766 143 0.2327 0.2859 REMARK 3 7 3.6221 - 3.4408 0.99 2745 155 0.2496 0.3068 REMARK 3 8 3.4408 - 3.2910 1.00 2753 139 0.2527 0.3066 REMARK 3 9 3.2910 - 3.1644 1.00 2736 170 0.2563 0.3438 REMARK 3 10 3.1644 - 3.0552 0.99 2736 147 0.2704 0.3103 REMARK 3 11 3.0552 - 2.9597 1.00 2747 131 0.2560 0.3432 REMARK 3 12 2.9597 - 2.8751 0.99 2760 126 0.2727 0.2948 REMARK 3 13 2.8751 - 2.7994 0.99 2720 150 0.2624 0.3231 REMARK 3 14 2.7994 - 2.7311 0.99 2763 135 0.2532 0.3176 REMARK 3 15 2.7311 - 2.6690 0.99 2711 158 0.2634 0.3412 REMARK 3 16 2.6690 - 2.6122 0.99 2708 149 0.2689 0.3349 REMARK 3 17 2.6122 - 2.5600 0.98 2728 121 0.2690 0.2816 REMARK 3 18 2.5600 - 2.5117 0.97 2665 154 0.2667 0.3500 REMARK 3 19 2.5117 - 2.4668 0.97 2710 130 0.2840 0.3008 REMARK 3 20 2.4668 - 2.4250 0.96 2586 140 0.2861 0.3806 REMARK 3 21 2.4250 - 2.3859 0.94 2619 154 0.2953 0.3505 REMARK 3 22 2.3859 - 2.3492 0.91 2501 126 0.2884 0.3852 REMARK 3 23 2.3492 - 2.3146 0.89 2456 128 0.2964 0.3298 REMARK 3 24 2.3146 - 2.2820 0.86 2359 127 0.2959 0.3155 REMARK 3 25 2.2820 - 2.2512 0.84 2309 124 0.2996 0.4012 REMARK 3 26 2.2512 - 2.2220 0.80 2194 112 0.3069 0.3645 REMARK 3 27 2.2220 - 2.1942 0.75 2055 118 0.3132 0.3730 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 9552 REMARK 3 ANGLE : 1.210 12976 REMARK 3 CHIRALITY : 0.047 1392 REMARK 3 PLANARITY : 0.007 1696 REMARK 3 DIHEDRAL : 14.863 3500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5H01 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1300001755. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75088 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 48.591 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.17800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COOT 0.8.2 REMARK 200 STARTING MODEL: 3BJX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, PEG 20000, PEG 8000, POTASSIUM REMARK 280 SODIUM TARTRATE TETRAHYDRATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.59050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 LEU A 3 REMARK 465 PRO A 4 REMARK 465 ASP A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 ILE A 8 REMARK 465 LYS A 301 REMARK 465 LEU A 302 REMARK 465 GLU A 303 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 LEU B 3 REMARK 465 PRO B 4 REMARK 465 ASP B 5 REMARK 465 ASN B 6 REMARK 465 SER B 7 REMARK 465 ILE B 8 REMARK 465 LYS B 301 REMARK 465 LEU B 302 REMARK 465 GLU B 303 REMARK 465 HIS B 304 REMARK 465 HIS B 305 REMARK 465 HIS B 306 REMARK 465 HIS B 307 REMARK 465 HIS B 308 REMARK 465 HIS B 309 REMARK 465 MET C 1 REMARK 465 ASN C 2 REMARK 465 LEU C 3 REMARK 465 PRO C 4 REMARK 465 ASP C 5 REMARK 465 ASN C 6 REMARK 465 SER C 7 REMARK 465 ILE C 8 REMARK 465 LYS C 301 REMARK 465 LEU C 302 REMARK 465 GLU C 303 REMARK 465 HIS C 304 REMARK 465 HIS C 305 REMARK 465 HIS C 306 REMARK 465 HIS C 307 REMARK 465 HIS C 308 REMARK 465 HIS C 309 REMARK 465 MET D 1 REMARK 465 ASN D 2 REMARK 465 LEU D 3 REMARK 465 PRO D 4 REMARK 465 ASP D 5 REMARK 465 ASN D 6 REMARK 465 SER D 7 REMARK 465 ILE D 8 REMARK 465 LYS D 301 REMARK 465 LEU D 302 REMARK 465 GLU D 303 REMARK 465 HIS D 304 REMARK 465 HIS D 305 REMARK 465 HIS D 306 REMARK 465 HIS D 307 REMARK 465 HIS D 308 REMARK 465 HIS D 309 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN D 203 O HOH D 401 1.48 REMARK 500 O HOH A 478 O HOH A 495 1.81 REMARK 500 O HOH A 506 O HOH A 508 1.84 REMARK 500 O HOH B 505 O HOH B 506 1.89 REMARK 500 OD1 ASP C 228 O HOH C 401 1.90 REMARK 500 O HOH B 411 O HOH B 494 1.93 REMARK 500 NE ARG C 211 O HOH C 402 1.94 REMARK 500 O GLY D 148 O HOH D 402 1.94 REMARK 500 NE2 GLN C 218 O HOH C 403 1.98 REMARK 500 O HOH B 480 O HOH B 502 1.99 REMARK 500 OG1 THR D 150 O HOH D 403 2.00 REMARK 500 OE1 GLU B 273 O HOH B 401 2.01 REMARK 500 NH1 ARG B 14 O GLN B 198 2.02 REMARK 500 NH2 ARG C 211 O HOH C 404 2.03 REMARK 500 NE2 GLN A 198 O HOH A 401 2.04 REMARK 500 O HOH B 506 O HOH B 507 2.05 REMARK 500 O HOH C 438 O HOH C 507 2.07 REMARK 500 O HOH B 465 O HOH B 483 2.07 REMARK 500 NH2 ARG A 258 OD1 ASP A 272 2.08 REMARK 500 OD1 ASP C 260 O HOH C 405 2.09 REMARK 500 O ARG A 242 O HOH A 402 2.11 REMARK 500 NE2 GLN D 96 O HOH D 404 2.11 REMARK 500 OE1 GLU C 65 NH1 ARG C 68 2.14 REMARK 500 O LEU B 300 O HOH B 402 2.14 REMARK 500 O ILE A 20 O HOH A 403 2.15 REMARK 500 OE2 GLU D 116 O HOH D 405 2.15 REMARK 500 OE1 GLN C 298 O HOH C 403 2.16 REMARK 500 O HOH B 505 O HOH B 507 2.16 REMARK 500 OE1 GLU A 26 O HOH A 404 2.16 REMARK 500 O HOH B 466 O HOH B 486 2.16 REMARK 500 O HOH C 476 O HOH C 489 2.16 REMARK 500 O PRO C 23 O HOH C 406 2.16 REMARK 500 O HOH B 461 O HOH B 488 2.16 REMARK 500 NH2 ARG D 258 OD1 ASP D 272 2.17 REMARK 500 ND1 HIS C 9 O HOH C 407 2.19 REMARK 500 OH TYR B 232 O HOH B 403 2.19 REMARK 500 O HOH A 484 O HOH A 502 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 414 O HOH D 487 2757 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET C 284 C LEU C 285 N 0.242 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET C 284 O - C - N ANGL. DEV. = -16.1 DEGREES REMARK 500 PRO D 166 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 103 9.78 -151.39 REMARK 500 ILE A 167 147.69 -176.25 REMARK 500 TRP A 212 77.41 -110.80 REMARK 500 MET A 256 82.53 -150.19 REMARK 500 TRP B 212 69.11 -114.16 REMARK 500 ASP B 228 13.47 55.72 REMARK 500 MET B 256 85.67 -153.62 REMARK 500 PRO C 166 30.22 -88.96 REMARK 500 TRP C 212 79.67 -114.39 REMARK 500 MET C 256 84.27 -152.90 REMARK 500 GLN D 198 61.78 62.67 REMARK 500 MET D 256 82.90 -150.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 18 ALA B 19 -148.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MET C 284 11.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 515 DISTANCE = 6.21 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GZX RELATED DB: PDB REMARK 900 RELATED ID: 5GZY RELATED DB: PDB REMARK 900 RELATED ID: 5H00 RELATED DB: PDB DBREF 5H01 A 1 301 UNP Q52086 HADD_PSEPU 1 301 DBREF 5H01 B 1 301 UNP Q52086 HADD_PSEPU 1 301 DBREF 5H01 C 1 301 UNP Q52086 HADD_PSEPU 1 301 DBREF 5H01 D 1 301 UNP Q52086 HADD_PSEPU 1 301 SEQADV 5H01 ILE A 288 UNP Q52086 LEU 288 ENGINEERED MUTATION SEQADV 5H01 LEU A 302 UNP Q52086 EXPRESSION TAG SEQADV 5H01 GLU A 303 UNP Q52086 EXPRESSION TAG SEQADV 5H01 HIS A 304 UNP Q52086 EXPRESSION TAG SEQADV 5H01 HIS A 305 UNP Q52086 EXPRESSION TAG SEQADV 5H01 HIS A 306 UNP Q52086 EXPRESSION TAG SEQADV 5H01 HIS A 307 UNP Q52086 EXPRESSION TAG SEQADV 5H01 HIS A 308 UNP Q52086 EXPRESSION TAG SEQADV 5H01 HIS A 309 UNP Q52086 EXPRESSION TAG SEQADV 5H01 ILE B 288 UNP Q52086 LEU 288 ENGINEERED MUTATION SEQADV 5H01 LEU B 302 UNP Q52086 EXPRESSION TAG SEQADV 5H01 GLU B 303 UNP Q52086 EXPRESSION TAG SEQADV 5H01 HIS B 304 UNP Q52086 EXPRESSION TAG SEQADV 5H01 HIS B 305 UNP Q52086 EXPRESSION TAG SEQADV 5H01 HIS B 306 UNP Q52086 EXPRESSION TAG SEQADV 5H01 HIS B 307 UNP Q52086 EXPRESSION TAG SEQADV 5H01 HIS B 308 UNP Q52086 EXPRESSION TAG SEQADV 5H01 HIS B 309 UNP Q52086 EXPRESSION TAG SEQADV 5H01 ILE C 288 UNP Q52086 LEU 288 ENGINEERED MUTATION SEQADV 5H01 LEU C 302 UNP Q52086 EXPRESSION TAG SEQADV 5H01 GLU C 303 UNP Q52086 EXPRESSION TAG SEQADV 5H01 HIS C 304 UNP Q52086 EXPRESSION TAG SEQADV 5H01 HIS C 305 UNP Q52086 EXPRESSION TAG SEQADV 5H01 HIS C 306 UNP Q52086 EXPRESSION TAG SEQADV 5H01 HIS C 307 UNP Q52086 EXPRESSION TAG SEQADV 5H01 HIS C 308 UNP Q52086 EXPRESSION TAG SEQADV 5H01 HIS C 309 UNP Q52086 EXPRESSION TAG SEQADV 5H01 ILE D 288 UNP Q52086 LEU 288 ENGINEERED MUTATION SEQADV 5H01 LEU D 302 UNP Q52086 EXPRESSION TAG SEQADV 5H01 GLU D 303 UNP Q52086 EXPRESSION TAG SEQADV 5H01 HIS D 304 UNP Q52086 EXPRESSION TAG SEQADV 5H01 HIS D 305 UNP Q52086 EXPRESSION TAG SEQADV 5H01 HIS D 306 UNP Q52086 EXPRESSION TAG SEQADV 5H01 HIS D 307 UNP Q52086 EXPRESSION TAG SEQADV 5H01 HIS D 308 UNP Q52086 EXPRESSION TAG SEQADV 5H01 HIS D 309 UNP Q52086 EXPRESSION TAG SEQRES 1 A 309 MET ASN LEU PRO ASP ASN SER ILE HIS LEU GLN LEU PRO SEQRES 2 A 309 ARG PRO VAL CYS GLU ALA ILE ILE ARG PRO VAL PRO GLU SEQRES 3 A 309 HIS ARG ALA ASP GLN GLU LEU SER GLU ILE TYR ARG ASP SEQRES 4 A 309 LEU LYS ALA THR PHE GLY VAL PRO TRP VAL GLY VAL ILE SEQRES 5 A 309 THR GLN ALA VAL ALA TYR TYR ARG PRO PHE PHE ALA GLU SEQRES 6 A 309 ALA TRP ARG ARG PHE ALA PRO SER ALA LYS THR HIS PHE SEQRES 7 A 309 PHE GLU ARG ALA SER ASP ASP ILE ARG ILE ARG SER TRP SEQRES 8 A 309 GLU LEU MET GLY GLN SER PHE VAL ILE GLU GLY GLN THR SEQRES 9 A 309 ASP ARG LEU ARG GLU MET GLY TYR SER VAL ARG GLU ILE SEQRES 10 A 309 GLY GLN ILE ARG ALA VAL LEU ASP ILE PHE ASP TYR GLY SEQRES 11 A 309 ASN PRO LYS TYR LEU ILE PHE ALA THR ALA ILE LYS GLU SEQRES 12 A 309 GLY LEU LEU SER GLY ARG THR PHE GLY GLY ALA ALA GLY SEQRES 13 A 309 ASP ALA ARG CYS HIS PHE PRO ARG SER PRO ILE CYS GLN SEQRES 14 A 309 ILE ASP PRO ILE PRO VAL MET VAL GLU GLU HIS HIS ALA SEQRES 15 A 309 GLY GLY THR LEU SER GLN VAL TYR ALA ASP ILE LYS GLN SEQRES 16 A 309 THR LEU GLN LEU PRO PHE ILE ASN SER ASP TYR LYS ALA SEQRES 17 A 309 MET ALA ARG TRP PRO SER TYR LEU GLU GLN ALA TRP GLY SEQRES 18 A 309 ALA LEU LYS PRO CYS ILE ASP THR PRO ALA TYR GLN ALA SEQRES 19 A 309 GLY ARG PHE ASP ILE ASN ALA ARG ALA LEU ALA ALA LEU SEQRES 20 A 309 ASP ALA LEU PRO THR ALA TYR ARG MET SER ARG ASP ASP SEQRES 21 A 309 ALA LEU GLN ALA GLY LEU SER GLU ALA GLN THR ASP GLU SEQRES 22 A 309 LEU ILE GLN VAL ILE SER LEU PHE GLN TRP MET LEU SER SEQRES 23 A 309 GLY ILE VAL LEU ASN VAL THR HIS PHE LYS GLN GLN ALA SEQRES 24 A 309 LEU LYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 309 MET ASN LEU PRO ASP ASN SER ILE HIS LEU GLN LEU PRO SEQRES 2 B 309 ARG PRO VAL CYS GLU ALA ILE ILE ARG PRO VAL PRO GLU SEQRES 3 B 309 HIS ARG ALA ASP GLN GLU LEU SER GLU ILE TYR ARG ASP SEQRES 4 B 309 LEU LYS ALA THR PHE GLY VAL PRO TRP VAL GLY VAL ILE SEQRES 5 B 309 THR GLN ALA VAL ALA TYR TYR ARG PRO PHE PHE ALA GLU SEQRES 6 B 309 ALA TRP ARG ARG PHE ALA PRO SER ALA LYS THR HIS PHE SEQRES 7 B 309 PHE GLU ARG ALA SER ASP ASP ILE ARG ILE ARG SER TRP SEQRES 8 B 309 GLU LEU MET GLY GLN SER PHE VAL ILE GLU GLY GLN THR SEQRES 9 B 309 ASP ARG LEU ARG GLU MET GLY TYR SER VAL ARG GLU ILE SEQRES 10 B 309 GLY GLN ILE ARG ALA VAL LEU ASP ILE PHE ASP TYR GLY SEQRES 11 B 309 ASN PRO LYS TYR LEU ILE PHE ALA THR ALA ILE LYS GLU SEQRES 12 B 309 GLY LEU LEU SER GLY ARG THR PHE GLY GLY ALA ALA GLY SEQRES 13 B 309 ASP ALA ARG CYS HIS PHE PRO ARG SER PRO ILE CYS GLN SEQRES 14 B 309 ILE ASP PRO ILE PRO VAL MET VAL GLU GLU HIS HIS ALA SEQRES 15 B 309 GLY GLY THR LEU SER GLN VAL TYR ALA ASP ILE LYS GLN SEQRES 16 B 309 THR LEU GLN LEU PRO PHE ILE ASN SER ASP TYR LYS ALA SEQRES 17 B 309 MET ALA ARG TRP PRO SER TYR LEU GLU GLN ALA TRP GLY SEQRES 18 B 309 ALA LEU LYS PRO CYS ILE ASP THR PRO ALA TYR GLN ALA SEQRES 19 B 309 GLY ARG PHE ASP ILE ASN ALA ARG ALA LEU ALA ALA LEU SEQRES 20 B 309 ASP ALA LEU PRO THR ALA TYR ARG MET SER ARG ASP ASP SEQRES 21 B 309 ALA LEU GLN ALA GLY LEU SER GLU ALA GLN THR ASP GLU SEQRES 22 B 309 LEU ILE GLN VAL ILE SER LEU PHE GLN TRP MET LEU SER SEQRES 23 B 309 GLY ILE VAL LEU ASN VAL THR HIS PHE LYS GLN GLN ALA SEQRES 24 B 309 LEU LYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 309 MET ASN LEU PRO ASP ASN SER ILE HIS LEU GLN LEU PRO SEQRES 2 C 309 ARG PRO VAL CYS GLU ALA ILE ILE ARG PRO VAL PRO GLU SEQRES 3 C 309 HIS ARG ALA ASP GLN GLU LEU SER GLU ILE TYR ARG ASP SEQRES 4 C 309 LEU LYS ALA THR PHE GLY VAL PRO TRP VAL GLY VAL ILE SEQRES 5 C 309 THR GLN ALA VAL ALA TYR TYR ARG PRO PHE PHE ALA GLU SEQRES 6 C 309 ALA TRP ARG ARG PHE ALA PRO SER ALA LYS THR HIS PHE SEQRES 7 C 309 PHE GLU ARG ALA SER ASP ASP ILE ARG ILE ARG SER TRP SEQRES 8 C 309 GLU LEU MET GLY GLN SER PHE VAL ILE GLU GLY GLN THR SEQRES 9 C 309 ASP ARG LEU ARG GLU MET GLY TYR SER VAL ARG GLU ILE SEQRES 10 C 309 GLY GLN ILE ARG ALA VAL LEU ASP ILE PHE ASP TYR GLY SEQRES 11 C 309 ASN PRO LYS TYR LEU ILE PHE ALA THR ALA ILE LYS GLU SEQRES 12 C 309 GLY LEU LEU SER GLY ARG THR PHE GLY GLY ALA ALA GLY SEQRES 13 C 309 ASP ALA ARG CYS HIS PHE PRO ARG SER PRO ILE CYS GLN SEQRES 14 C 309 ILE ASP PRO ILE PRO VAL MET VAL GLU GLU HIS HIS ALA SEQRES 15 C 309 GLY GLY THR LEU SER GLN VAL TYR ALA ASP ILE LYS GLN SEQRES 16 C 309 THR LEU GLN LEU PRO PHE ILE ASN SER ASP TYR LYS ALA SEQRES 17 C 309 MET ALA ARG TRP PRO SER TYR LEU GLU GLN ALA TRP GLY SEQRES 18 C 309 ALA LEU LYS PRO CYS ILE ASP THR PRO ALA TYR GLN ALA SEQRES 19 C 309 GLY ARG PHE ASP ILE ASN ALA ARG ALA LEU ALA ALA LEU SEQRES 20 C 309 ASP ALA LEU PRO THR ALA TYR ARG MET SER ARG ASP ASP SEQRES 21 C 309 ALA LEU GLN ALA GLY LEU SER GLU ALA GLN THR ASP GLU SEQRES 22 C 309 LEU ILE GLN VAL ILE SER LEU PHE GLN TRP MET LEU SER SEQRES 23 C 309 GLY ILE VAL LEU ASN VAL THR HIS PHE LYS GLN GLN ALA SEQRES 24 C 309 LEU LYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 309 MET ASN LEU PRO ASP ASN SER ILE HIS LEU GLN LEU PRO SEQRES 2 D 309 ARG PRO VAL CYS GLU ALA ILE ILE ARG PRO VAL PRO GLU SEQRES 3 D 309 HIS ARG ALA ASP GLN GLU LEU SER GLU ILE TYR ARG ASP SEQRES 4 D 309 LEU LYS ALA THR PHE GLY VAL PRO TRP VAL GLY VAL ILE SEQRES 5 D 309 THR GLN ALA VAL ALA TYR TYR ARG PRO PHE PHE ALA GLU SEQRES 6 D 309 ALA TRP ARG ARG PHE ALA PRO SER ALA LYS THR HIS PHE SEQRES 7 D 309 PHE GLU ARG ALA SER ASP ASP ILE ARG ILE ARG SER TRP SEQRES 8 D 309 GLU LEU MET GLY GLN SER PHE VAL ILE GLU GLY GLN THR SEQRES 9 D 309 ASP ARG LEU ARG GLU MET GLY TYR SER VAL ARG GLU ILE SEQRES 10 D 309 GLY GLN ILE ARG ALA VAL LEU ASP ILE PHE ASP TYR GLY SEQRES 11 D 309 ASN PRO LYS TYR LEU ILE PHE ALA THR ALA ILE LYS GLU SEQRES 12 D 309 GLY LEU LEU SER GLY ARG THR PHE GLY GLY ALA ALA GLY SEQRES 13 D 309 ASP ALA ARG CYS HIS PHE PRO ARG SER PRO ILE CYS GLN SEQRES 14 D 309 ILE ASP PRO ILE PRO VAL MET VAL GLU GLU HIS HIS ALA SEQRES 15 D 309 GLY GLY THR LEU SER GLN VAL TYR ALA ASP ILE LYS GLN SEQRES 16 D 309 THR LEU GLN LEU PRO PHE ILE ASN SER ASP TYR LYS ALA SEQRES 17 D 309 MET ALA ARG TRP PRO SER TYR LEU GLU GLN ALA TRP GLY SEQRES 18 D 309 ALA LEU LYS PRO CYS ILE ASP THR PRO ALA TYR GLN ALA SEQRES 19 D 309 GLY ARG PHE ASP ILE ASN ALA ARG ALA LEU ALA ALA LEU SEQRES 20 D 309 ASP ALA LEU PRO THR ALA TYR ARG MET SER ARG ASP ASP SEQRES 21 D 309 ALA LEU GLN ALA GLY LEU SER GLU ALA GLN THR ASP GLU SEQRES 22 D 309 LEU ILE GLN VAL ILE SER LEU PHE GLN TRP MET LEU SER SEQRES 23 D 309 GLY ILE VAL LEU ASN VAL THR HIS PHE LYS GLN GLN ALA SEQRES 24 D 309 LEU LYS LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 5 HOH *435(H2 O) HELIX 1 AA1 ASP A 30 GLY A 45 1 16 HELIX 2 AA2 GLY A 50 ALA A 57 1 8 HELIX 3 AA3 TYR A 59 LYS A 75 1 17 HELIX 4 AA4 THR A 76 PHE A 98 1 23 HELIX 5 AA5 GLN A 103 GLY A 111 1 9 HELIX 6 AA6 SER A 113 GLY A 148 1 36 HELIX 7 AA7 ASP A 157 PHE A 162 5 6 HELIX 8 AA8 GLY A 183 LEU A 197 1 15 HELIX 9 AA9 ASN A 203 ALA A 210 1 8 HELIX 10 AB1 TRP A 212 LYS A 224 1 13 HELIX 11 AB2 PRO A 225 ILE A 227 5 3 HELIX 12 AB3 THR A 229 ALA A 249 1 21 HELIX 13 AB4 SER A 257 GLY A 265 1 9 HELIX 14 AB5 SER A 267 ALA A 299 1 33 HELIX 15 AB6 ASP B 30 GLY B 45 1 16 HELIX 16 AB7 GLY B 50 ALA B 57 1 8 HELIX 17 AB8 TYR B 59 LYS B 75 1 17 HELIX 18 AB9 THR B 76 PHE B 98 1 23 HELIX 19 AC1 GLN B 103 GLY B 111 1 9 HELIX 20 AC2 SER B 113 GLY B 148 1 36 HELIX 21 AC3 ASP B 157 PHE B 162 5 6 HELIX 22 AC4 GLY B 183 GLN B 198 1 16 HELIX 23 AC5 ASN B 203 ALA B 210 1 8 HELIX 24 AC6 TRP B 212 LYS B 224 1 13 HELIX 25 AC7 PRO B 225 ILE B 227 5 3 HELIX 26 AC8 THR B 229 ALA B 249 1 21 HELIX 27 AC9 SER B 257 GLY B 265 1 9 HELIX 28 AD1 SER B 267 LEU B 300 1 34 HELIX 29 AD2 ASP C 30 GLY C 45 1 16 HELIX 30 AD3 GLY C 50 ALA C 57 1 8 HELIX 31 AD4 TYR C 59 LYS C 75 1 17 HELIX 32 AD5 THR C 76 PHE C 98 1 23 HELIX 33 AD6 GLN C 103 GLY C 111 1 9 HELIX 34 AD7 SER C 113 GLY C 148 1 36 HELIX 35 AD8 ASP C 157 PHE C 162 5 6 HELIX 36 AD9 GLY C 184 GLN C 198 1 15 HELIX 37 AE1 ASN C 203 ALA C 210 1 8 HELIX 38 AE2 TRP C 212 LYS C 224 1 13 HELIX 39 AE3 PRO C 225 ILE C 227 5 3 HELIX 40 AE4 THR C 229 ALA C 249 1 21 HELIX 41 AE5 SER C 257 GLY C 265 1 9 HELIX 42 AE6 SER C 267 ALA C 299 1 33 HELIX 43 AE7 ASP D 30 GLY D 45 1 16 HELIX 44 AE8 GLY D 50 ALA D 57 1 8 HELIX 45 AE9 TYR D 59 LYS D 75 1 17 HELIX 46 AF1 THR D 76 PHE D 98 1 23 HELIX 47 AF2 GLN D 103 GLY D 111 1 9 HELIX 48 AF3 SER D 113 GLY D 148 1 36 HELIX 49 AF4 ASP D 157 PHE D 162 5 6 HELIX 50 AF5 GLY D 183 GLN D 198 1 16 HELIX 51 AF6 ASN D 203 ALA D 210 1 8 HELIX 52 AF7 TRP D 212 LYS D 224 1 13 HELIX 53 AF8 PRO D 225 ILE D 227 5 3 HELIX 54 AF9 THR D 229 ALA D 249 1 21 HELIX 55 AG1 SER D 257 GLY D 265 1 9 HELIX 56 AG2 SER D 267 ALA D 299 1 33 CISPEP 1 ASP A 171 PRO A 172 0 -6.70 CISPEP 2 ASP B 171 PRO B 172 0 -8.09 CISPEP 3 ASP C 171 PRO C 172 0 -2.98 CISPEP 4 ASP D 171 PRO D 172 0 -3.34 CRYST1 89.713 97.181 93.750 90.00 107.53 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011147 0.000000 0.003522 0.00000 SCALE2 0.000000 0.010290 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011186 0.00000