HEADER TRANSCRIPTION REGULATOR 08-OCT-16 5H1A TITLE CRYSTAL STRUCTURE OF AN ICLR HOMOLOG FROM MICROBACTERIUM SP. STRAIN TITLE 2 HM58-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ICLR TRANSCRIPTION FACTOR HOMOLOG; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MICROBACTERIUM SP.; SOURCE 3 ORGANISM_TAXID: 51671; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA-BINDING, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR T.AKIYAMA,Y.YAMADA,N.TAKAYA,S.ITO,Y.SASAKI,S.YAJIMA REVDAT 3 20-MAR-24 5H1A 1 REMARK REVDAT 2 26-FEB-20 5H1A 1 REMARK REVDAT 1 18-JAN-17 5H1A 0 JRNL AUTH T.AKIYAMA,Y.YAMADA,N.TAKAYA,S.ITO,Y.SASAKI,S.YAJIMA JRNL TITL CRYSTAL STRUCTURE OF AN ICLR HOMOLOGUE FROM MICROBACTERIUM JRNL TITL 2 SP. STRAIN HM58-2. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 73 16 2017 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 28045389 JRNL DOI 10.1107/S2053230X16019208 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 66018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3489 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.14 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4489 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 243 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7342 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.22000 REMARK 3 B22 (A**2) : 0.37000 REMARK 3 B33 (A**2) : -1.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.220 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7453 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7540 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10127 ; 1.462 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17177 ; 3.675 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 957 ; 5.746 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 317 ;33.725 ;21.672 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1270 ;15.474 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 103 ;18.782 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1217 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8394 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1669 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3843 ; 1.668 ; 3.725 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3842 ; 1.667 ; 3.725 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4795 ; 2.773 ; 5.576 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4796 ; 2.773 ; 5.576 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3610 ; 1.973 ; 4.101 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3607 ; 1.969 ; 4.100 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5327 ; 3.314 ; 6.020 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7757 ; 4.929 ;44.291 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7745 ; 4.929 ;44.269 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5H1A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1300001822. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.038 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69549 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M (NH4)2HPO4, PH 8.0, LIQUID REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 45.44450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 77.68750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.44450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 77.68750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASN A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 SER A 6 REMARK 465 GLY A 7 REMARK 465 ARG A 130 REMARK 465 VAL A 131 REMARK 465 ALA A 132 REMARK 465 GLY A 133 REMARK 465 ARG A 134 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASN B 3 REMARK 465 SER B 4 REMARK 465 PRO B 5 REMARK 465 SER B 6 REMARK 465 GLY B 7 REMARK 465 MET C -19 REMARK 465 GLY C -18 REMARK 465 SER C -17 REMARK 465 SER C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 HIS C -10 REMARK 465 SER C -9 REMARK 465 SER C -8 REMARK 465 GLY C -7 REMARK 465 LEU C -6 REMARK 465 VAL C -5 REMARK 465 PRO C -4 REMARK 465 ARG C -3 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 ASN C 3 REMARK 465 SER C 4 REMARK 465 PRO C 5 REMARK 465 SER C 6 REMARK 465 GLY C 7 REMARK 465 ARG C 249 REMARK 465 TRP C 250 REMARK 465 MET D -19 REMARK 465 GLY D -18 REMARK 465 SER D -17 REMARK 465 SER D -16 REMARK 465 HIS D -15 REMARK 465 HIS D -14 REMARK 465 HIS D -13 REMARK 465 HIS D -12 REMARK 465 HIS D -11 REMARK 465 HIS D -10 REMARK 465 SER D -9 REMARK 465 SER D -8 REMARK 465 GLY D -7 REMARK 465 LEU D -6 REMARK 465 VAL D -5 REMARK 465 PRO D -4 REMARK 465 ARG D -3 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 ASN D 3 REMARK 465 SER D 4 REMARK 465 PRO D 5 REMARK 465 ARG D 246 REMARK 465 ALA D 247 REMARK 465 SER D 248 REMARK 465 ARG D 249 REMARK 465 TRP D 250 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 155 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG B 155 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 VAL B 190 CB - CA - C ANGL. DEV. = -13.3 DEGREES REMARK 500 VAL D 190 CB - CA - C ANGL. DEV. = -13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 25 89.25 -153.88 REMARK 500 GLU A 101 -116.95 -124.57 REMARK 500 LEU A 163 73.57 -116.31 REMARK 500 THR A 172 53.30 -143.80 REMARK 500 ASP B 62 42.23 -83.55 REMARK 500 GLU B 101 -113.96 -127.89 REMARK 500 LEU B 163 77.81 -118.65 REMARK 500 ASP C 62 51.23 -104.96 REMARK 500 GLU C 101 -116.04 -131.82 REMARK 500 ILE C 196 -88.20 -125.91 REMARK 500 GLU D 101 -116.84 -130.88 REMARK 500 ARG D 130 63.03 -109.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 DBREF 5H1A A -19 250 PDB 5H1A 5H1A -19 250 DBREF 5H1A B -19 250 PDB 5H1A 5H1A -19 250 DBREF 5H1A C -19 250 PDB 5H1A 5H1A -19 250 DBREF 5H1A D -19 250 PDB 5H1A 5H1A -19 250 SEQRES 1 A 270 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 270 LEU VAL PRO ARG GLY SER HIS MET ALA ASN SER PRO SER SEQRES 3 A 270 GLY ASP SER MET LEU ALA ARG VAL VAL ARG VAL LEU GLU SEQRES 4 A 270 THR PHE ASN VAL ASP ARG THR ALA GLN THR ALA SER ASP SEQRES 5 A 270 ILE GLY ARG ARG ALA ALA LEU PRO SER SER THR ALA HIS SEQRES 6 A 270 ARG VAL VAL ASP GLU MET VAL LEU VAL GLY ILE LEU GLU SEQRES 7 A 270 ARG GLY ILE ASP GLY LYS VAL ARG LEU GLY MET ARG LEU SEQRES 8 A 270 TRP GLU LEU ALA LEU ARG GLY SER MET ALA LEU ARG LEU SEQRES 9 A 270 ARG GLN VAL ALA LEU PRO HIS MET GLU ARG VAL GLN GLN SEQRES 10 A 270 ARG VAL ARG GLU HIS THR GLN LEU ALA VAL LEU GLU HIS SEQRES 11 A 270 ASN GLU VAL LEU PHE LEU GLU ARG LEU SER HIS HIS GLU SEQRES 12 A 270 ALA VAL SER ASN LEU ALA ARG VAL ALA GLY ARG LEU PRO SEQRES 13 A 270 VAL HIS ALA SER SER SER GLY LEU MET LEU LEU ALA HIS SEQRES 14 A 270 ALA GLY PRO GLU VAL ARG GLU GLU VAL LEU SER LYS PRO SEQRES 15 A 270 LEU PRO ARG VAL GLY PRO GLY THR VAL THR ASP PRO GLU SEQRES 16 A 270 ALA LEU ARG ARG LEU LEU ALA ASN ALA TYR ARG ALA GLY SEQRES 17 A 270 TYR VAL ALA ALA PRO GLY TYR ILE GLU ALA VAL ALA THR SEQRES 18 A 270 GLY ILE ALA VAL PRO ILE ARG SER GLU GLY VAL VAL ILE SEQRES 19 A 270 ALA ALA LEU SER ALA VAL GLN PRO LEU GLN ASN ALA VAL SEQRES 20 A 270 GLU PRO THR VAL GLU ILE LEU ARG GLU ALA ALA VAL GLY SEQRES 21 A 270 ILE GLU THR ASP LEU ARG ALA SER ARG TRP SEQRES 1 B 270 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 270 LEU VAL PRO ARG GLY SER HIS MET ALA ASN SER PRO SER SEQRES 3 B 270 GLY ASP SER MET LEU ALA ARG VAL VAL ARG VAL LEU GLU SEQRES 4 B 270 THR PHE ASN VAL ASP ARG THR ALA GLN THR ALA SER ASP SEQRES 5 B 270 ILE GLY ARG ARG ALA ALA LEU PRO SER SER THR ALA HIS SEQRES 6 B 270 ARG VAL VAL ASP GLU MET VAL LEU VAL GLY ILE LEU GLU SEQRES 7 B 270 ARG GLY ILE ASP GLY LYS VAL ARG LEU GLY MET ARG LEU SEQRES 8 B 270 TRP GLU LEU ALA LEU ARG GLY SER MET ALA LEU ARG LEU SEQRES 9 B 270 ARG GLN VAL ALA LEU PRO HIS MET GLU ARG VAL GLN GLN SEQRES 10 B 270 ARG VAL ARG GLU HIS THR GLN LEU ALA VAL LEU GLU HIS SEQRES 11 B 270 ASN GLU VAL LEU PHE LEU GLU ARG LEU SER HIS HIS GLU SEQRES 12 B 270 ALA VAL SER ASN LEU ALA ARG VAL ALA GLY ARG LEU PRO SEQRES 13 B 270 VAL HIS ALA SER SER SER GLY LEU MET LEU LEU ALA HIS SEQRES 14 B 270 ALA GLY PRO GLU VAL ARG GLU GLU VAL LEU SER LYS PRO SEQRES 15 B 270 LEU PRO ARG VAL GLY PRO GLY THR VAL THR ASP PRO GLU SEQRES 16 B 270 ALA LEU ARG ARG LEU LEU ALA ASN ALA TYR ARG ALA GLY SEQRES 17 B 270 TYR VAL ALA ALA PRO GLY TYR ILE GLU ALA VAL ALA THR SEQRES 18 B 270 GLY ILE ALA VAL PRO ILE ARG SER GLU GLY VAL VAL ILE SEQRES 19 B 270 ALA ALA LEU SER ALA VAL GLN PRO LEU GLN ASN ALA VAL SEQRES 20 B 270 GLU PRO THR VAL GLU ILE LEU ARG GLU ALA ALA VAL GLY SEQRES 21 B 270 ILE GLU THR ASP LEU ARG ALA SER ARG TRP SEQRES 1 C 270 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 270 LEU VAL PRO ARG GLY SER HIS MET ALA ASN SER PRO SER SEQRES 3 C 270 GLY ASP SER MET LEU ALA ARG VAL VAL ARG VAL LEU GLU SEQRES 4 C 270 THR PHE ASN VAL ASP ARG THR ALA GLN THR ALA SER ASP SEQRES 5 C 270 ILE GLY ARG ARG ALA ALA LEU PRO SER SER THR ALA HIS SEQRES 6 C 270 ARG VAL VAL ASP GLU MET VAL LEU VAL GLY ILE LEU GLU SEQRES 7 C 270 ARG GLY ILE ASP GLY LYS VAL ARG LEU GLY MET ARG LEU SEQRES 8 C 270 TRP GLU LEU ALA LEU ARG GLY SER MET ALA LEU ARG LEU SEQRES 9 C 270 ARG GLN VAL ALA LEU PRO HIS MET GLU ARG VAL GLN GLN SEQRES 10 C 270 ARG VAL ARG GLU HIS THR GLN LEU ALA VAL LEU GLU HIS SEQRES 11 C 270 ASN GLU VAL LEU PHE LEU GLU ARG LEU SER HIS HIS GLU SEQRES 12 C 270 ALA VAL SER ASN LEU ALA ARG VAL ALA GLY ARG LEU PRO SEQRES 13 C 270 VAL HIS ALA SER SER SER GLY LEU MET LEU LEU ALA HIS SEQRES 14 C 270 ALA GLY PRO GLU VAL ARG GLU GLU VAL LEU SER LYS PRO SEQRES 15 C 270 LEU PRO ARG VAL GLY PRO GLY THR VAL THR ASP PRO GLU SEQRES 16 C 270 ALA LEU ARG ARG LEU LEU ALA ASN ALA TYR ARG ALA GLY SEQRES 17 C 270 TYR VAL ALA ALA PRO GLY TYR ILE GLU ALA VAL ALA THR SEQRES 18 C 270 GLY ILE ALA VAL PRO ILE ARG SER GLU GLY VAL VAL ILE SEQRES 19 C 270 ALA ALA LEU SER ALA VAL GLN PRO LEU GLN ASN ALA VAL SEQRES 20 C 270 GLU PRO THR VAL GLU ILE LEU ARG GLU ALA ALA VAL GLY SEQRES 21 C 270 ILE GLU THR ASP LEU ARG ALA SER ARG TRP SEQRES 1 D 270 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 D 270 LEU VAL PRO ARG GLY SER HIS MET ALA ASN SER PRO SER SEQRES 3 D 270 GLY ASP SER MET LEU ALA ARG VAL VAL ARG VAL LEU GLU SEQRES 4 D 270 THR PHE ASN VAL ASP ARG THR ALA GLN THR ALA SER ASP SEQRES 5 D 270 ILE GLY ARG ARG ALA ALA LEU PRO SER SER THR ALA HIS SEQRES 6 D 270 ARG VAL VAL ASP GLU MET VAL LEU VAL GLY ILE LEU GLU SEQRES 7 D 270 ARG GLY ILE ASP GLY LYS VAL ARG LEU GLY MET ARG LEU SEQRES 8 D 270 TRP GLU LEU ALA LEU ARG GLY SER MET ALA LEU ARG LEU SEQRES 9 D 270 ARG GLN VAL ALA LEU PRO HIS MET GLU ARG VAL GLN GLN SEQRES 10 D 270 ARG VAL ARG GLU HIS THR GLN LEU ALA VAL LEU GLU HIS SEQRES 11 D 270 ASN GLU VAL LEU PHE LEU GLU ARG LEU SER HIS HIS GLU SEQRES 12 D 270 ALA VAL SER ASN LEU ALA ARG VAL ALA GLY ARG LEU PRO SEQRES 13 D 270 VAL HIS ALA SER SER SER GLY LEU MET LEU LEU ALA HIS SEQRES 14 D 270 ALA GLY PRO GLU VAL ARG GLU GLU VAL LEU SER LYS PRO SEQRES 15 D 270 LEU PRO ARG VAL GLY PRO GLY THR VAL THR ASP PRO GLU SEQRES 16 D 270 ALA LEU ARG ARG LEU LEU ALA ASN ALA TYR ARG ALA GLY SEQRES 17 D 270 TYR VAL ALA ALA PRO GLY TYR ILE GLU ALA VAL ALA THR SEQRES 18 D 270 GLY ILE ALA VAL PRO ILE ARG SER GLU GLY VAL VAL ILE SEQRES 19 D 270 ALA ALA LEU SER ALA VAL GLN PRO LEU GLN ASN ALA VAL SEQRES 20 D 270 GLU PRO THR VAL GLU ILE LEU ARG GLU ALA ALA VAL GLY SEQRES 21 D 270 ILE GLU THR ASP LEU ARG ALA SER ARG TRP HET PO4 A 301 5 HETNAM PO4 PHOSPHATE ION FORMUL 5 PO4 O4 P 3- FORMUL 6 HOH *125(H2 O) HELIX 1 AA1 SER A 9 GLU A 19 1 11 HELIX 2 AA2 THR A 29 ALA A 38 1 10 HELIX 3 AA3 PRO A 40 VAL A 54 1 15 HELIX 4 AA4 GLY A 68 ARG A 77 1 10 HELIX 5 AA5 GLY A 78 ARG A 100 1 23 HELIX 6 AA6 PRO A 136 ALA A 139 5 4 HELIX 7 AA7 SER A 140 ALA A 150 1 11 HELIX 8 AA8 GLY A 151 SER A 160 1 10 HELIX 9 AA9 ASP A 173 GLY A 188 1 16 HELIX 10 AB1 VAL A 227 SER A 248 1 22 HELIX 11 AB2 SER B 9 PHE B 21 1 13 HELIX 12 AB3 THR B 29 ALA B 37 1 9 HELIX 13 AB4 PRO B 40 VAL B 54 1 15 HELIX 14 AB5 GLY B 68 LEU B 76 1 9 HELIX 15 AB6 GLY B 78 ARG B 100 1 23 HELIX 16 AB7 PRO B 136 ALA B 139 5 4 HELIX 17 AB8 SER B 140 HIS B 149 1 10 HELIX 18 AB9 GLY B 151 LYS B 161 1 11 HELIX 19 AC1 ASP B 173 GLY B 188 1 16 HELIX 20 AC2 ALA B 226 ARG B 246 1 21 HELIX 21 AC3 SER C 9 GLU C 19 1 11 HELIX 22 AC4 THR C 29 ALA C 38 1 10 HELIX 23 AC5 PRO C 40 VAL C 54 1 15 HELIX 24 AC6 GLY C 68 ARG C 77 1 10 HELIX 25 AC7 GLY C 78 ARG C 100 1 23 HELIX 26 AC8 SER C 140 HIS C 149 1 10 HELIX 27 AC9 GLY C 151 LYS C 161 1 11 HELIX 28 AD1 ASP C 173 GLY C 188 1 16 HELIX 29 AD2 VAL C 227 ALA C 247 1 21 HELIX 30 AD3 SER D 9 GLU D 19 1 11 HELIX 31 AD4 THR D 29 ALA D 37 1 9 HELIX 32 AD5 PRO D 40 VAL D 54 1 15 HELIX 33 AD6 GLY D 68 ARG D 77 1 10 HELIX 34 AD7 GLY D 78 ARG D 100 1 23 HELIX 35 AD8 PRO D 136 ALA D 139 5 4 HELIX 36 AD9 SER D 140 HIS D 149 1 10 HELIX 37 AE1 GLY D 151 LYS D 161 1 11 HELIX 38 AE2 ASP D 173 GLY D 188 1 16 HELIX 39 AE3 ALA D 226 LEU D 245 1 20 SHEET 1 AA1 3 ALA A 27 GLN A 28 0 SHEET 2 AA1 3 VAL A 65 LEU A 67 -1 O VAL A 65 N GLN A 28 SHEET 3 AA1 3 LEU A 57 ARG A 59 -1 N GLU A 58 O ARG A 66 SHEET 1 AA2 5 GLU A 112 SER A 120 0 SHEET 2 AA2 5 HIS A 102 GLU A 109 -1 N GLU A 109 O GLU A 112 SHEET 3 AA2 5 VAL A 212 PRO A 222 -1 O SER A 218 N GLN A 104 SHEET 4 AA2 5 ALA A 200 SER A 209 -1 N THR A 201 O GLN A 221 SHEET 5 AA2 5 VAL A 190 PRO A 193 -1 N ALA A 192 O GLY A 202 SHEET 1 AA3 2 LEU B 57 ARG B 59 0 SHEET 2 AA3 2 VAL B 65 LEU B 67 -1 O ARG B 66 N GLU B 58 SHEET 1 AA4 5 GLU B 112 SER B 120 0 SHEET 2 AA4 5 HIS B 102 GLU B 109 -1 N LEU B 105 O LEU B 116 SHEET 3 AA4 5 VAL B 212 PRO B 222 -1 O SER B 218 N GLN B 104 SHEET 4 AA4 5 ALA B 200 SER B 209 -1 N THR B 201 O GLN B 221 SHEET 5 AA4 5 VAL B 190 PRO B 193 -1 N ALA B 192 O GLY B 202 SHEET 1 AA5 2 LEU C 57 ARG C 59 0 SHEET 2 AA5 2 VAL C 65 LEU C 67 -1 O ARG C 66 N GLU C 58 SHEET 1 AA6 6 LEU C 135 PRO C 136 0 SHEET 2 AA6 6 GLU C 112 SER C 120 -1 N VAL C 113 O LEU C 135 SHEET 3 AA6 6 HIS C 102 GLU C 109 -1 N GLU C 109 O GLU C 112 SHEET 4 AA6 6 VAL C 212 PRO C 222 -1 O SER C 218 N GLN C 104 SHEET 5 AA6 6 ALA C 200 SER C 209 -1 N THR C 201 O GLN C 221 SHEET 6 AA6 6 VAL C 190 PRO C 193 -1 N VAL C 190 O ALA C 204 SHEET 1 AA7 2 LEU D 57 ARG D 59 0 SHEET 2 AA7 2 VAL D 65 LEU D 67 -1 O ARG D 66 N GLU D 58 SHEET 1 AA8 5 GLU D 112 SER D 120 0 SHEET 2 AA8 5 HIS D 102 GLU D 109 -1 N VAL D 107 O LEU D 114 SHEET 3 AA8 5 VAL D 212 PRO D 222 -1 O SER D 218 N GLN D 104 SHEET 4 AA8 5 ALA D 200 SER D 209 -1 N THR D 201 O GLN D 221 SHEET 5 AA8 5 VAL D 190 ALA D 191 -1 N VAL D 190 O ALA D 204 SITE 1 AC1 5 ASN A 22 ARG A 25 ARG A 36 ASN B 225 SITE 2 AC1 5 ALA B 226 CRYST1 90.889 155.375 83.262 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011002 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006436 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012010 0.00000