HEADER TRANSCRIPTION/TRANSCRIPTION INHIBITOR 11-OCT-16 5H1T TITLE COMPLEX STRUCTURE OF TRIM24 PHD-BROMODOMAIN AND INHIBITOR 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION INTERMEDIARY FACTOR 1-ALPHA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 824-1006; COMPND 5 SYNONYM: TIF1-ALPHA,E3 UBIQUITIN-PROTEIN LIGASE TRIM24,RING FINGER COMPND 6 PROTEIN 82,TRIPARTITE MOTIF-CONTAINING PROTEIN 24; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRIM24, RNF82, TIF1, TIF1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: 'BL21-GOLD(DE3)PLYSS AG' KEYWDS TRANSCRIPTION, TRANSCRIPTION INHIBITOR, TRANSCRIPTION-TRANSCRIPTION KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.LIU REVDAT 5 08-NOV-23 5H1T 1 REMARK REVDAT 4 27-SEP-17 5H1T 1 REMARK REVDAT 3 19-APR-17 5H1T 1 JRNL REVDAT 2 01-MAR-17 5H1T 1 JRNL REVDAT 1 22-FEB-17 5H1T 0 JRNL AUTH J.LIU,F.LI,H.BAO,Y.JIANG,S.ZHANG,R.MA,J.GAO,J.WU,K.RUAN JRNL TITL THE POLAR WARHEAD OF A TRIM24 BROMODOMAIN INHIBITOR JRNL TITL 2 REARRANGES A WATER-MEDIATED INTERACTION NETWORK JRNL REF FEBS J. V. 284 1082 2017 JRNL REFN ISSN 1742-4658 JRNL PMID 28207202 JRNL DOI 10.1111/FEBS.14041 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.930 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 52544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2680 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.4031 - 5.1986 0.93 2640 155 0.1637 0.1872 REMARK 3 2 5.1986 - 4.1292 0.91 2571 143 0.1487 0.1866 REMARK 3 3 4.1292 - 3.6081 0.95 2717 152 0.1552 0.1838 REMARK 3 4 3.6081 - 3.2786 0.96 2724 145 0.1724 0.2356 REMARK 3 5 3.2786 - 3.0438 0.88 2464 135 0.1893 0.2232 REMARK 3 6 3.0438 - 2.8645 0.93 2669 132 0.2006 0.2482 REMARK 3 7 2.8645 - 2.7211 0.94 2666 161 0.1903 0.2400 REMARK 3 8 2.7211 - 2.6027 0.94 2721 135 0.1856 0.2543 REMARK 3 9 2.6027 - 2.5026 0.95 2712 136 0.1935 0.2319 REMARK 3 10 2.5026 - 2.4163 0.88 2466 141 0.1877 0.2460 REMARK 3 11 2.4163 - 2.3407 0.92 2633 140 0.1856 0.2544 REMARK 3 12 2.3407 - 2.2738 0.93 2607 152 0.1892 0.2555 REMARK 3 13 2.2738 - 2.2140 0.94 2661 133 0.1932 0.2528 REMARK 3 14 2.2140 - 2.1600 0.93 2617 152 0.1847 0.2241 REMARK 3 15 2.1600 - 2.1109 0.95 2721 145 0.1942 0.2452 REMARK 3 16 2.1109 - 2.0660 0.93 2685 139 0.1939 0.2631 REMARK 3 17 2.0660 - 2.0247 0.86 2365 129 0.2069 0.2400 REMARK 3 18 2.0247 - 1.9865 0.90 2661 131 0.2029 0.2605 REMARK 3 19 1.9865 - 1.9510 0.91 2564 124 0.2237 0.2684 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5893 REMARK 3 ANGLE : 0.860 7981 REMARK 3 CHIRALITY : 0.050 852 REMARK 3 PLANARITY : 0.005 1029 REMARK 3 DIHEDRAL : 13.272 3592 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 0.6662 -0.2955 0.1867 REMARK 3 T TENSOR REMARK 3 T11: 0.1890 T22: 0.1409 REMARK 3 T33: 0.1993 T12: 0.0053 REMARK 3 T13: -0.0076 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.1875 L22: 0.0007 REMARK 3 L33: 0.3672 L12: 0.0244 REMARK 3 L13: -0.0661 L23: 0.0420 REMARK 3 S TENSOR REMARK 3 S11: 0.0479 S12: -0.0023 S13: 0.0201 REMARK 3 S21: -0.0025 S22: -0.0360 S23: 0.0073 REMARK 3 S31: 0.0266 S32: 0.0126 S33: -0.0100 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5H1T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1300001853. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, HKL REMARK 200 DATA SCALING SOFTWARE : HKL-2000, HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52566 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.54200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3O33 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES SODIUM, 2%(V/V) REMARK 280 POLYETHYLENE GLYCOL 400, 2.0 M AMMONIUM SULFATE, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 824 REMARK 465 CYS A 882 REMARK 465 ASP A 883 REMARK 465 ALA A 884 REMARK 465 PRO A 885 REMARK 465 SER A 886 REMARK 465 HIS A 887 REMARK 465 ASN A 888 REMARK 465 SER A 889 REMARK 465 GLU A 890 REMARK 465 LYS A 891 REMARK 465 PRO B 824 REMARK 465 ASN B 825 REMARK 465 HIS B 887 REMARK 465 ASN B 888 REMARK 465 SER B 889 REMARK 465 SER C 886 REMARK 465 HIS C 887 REMARK 465 ASN C 888 REMARK 465 SER C 889 REMARK 465 GLU C 890 REMARK 465 PRO D 824 REMARK 465 CYS D 882 REMARK 465 ASP D 883 REMARK 465 ALA D 884 REMARK 465 PRO D 885 REMARK 465 SER D 886 REMARK 465 HIS D 887 REMARK 465 ASN D 888 REMARK 465 SER D 889 REMARK 465 GLU D 890 REMARK 465 LYS D 891 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 842 CG CD OE1 OE2 REMARK 470 GLU A 864 CG CD OE1 OE2 REMARK 470 LYS C 937 CG CD CE NZ REMARK 470 LYS D 940 CG CD CE NZ REMARK 470 GLU D 981 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 1264 O HOH C 1206 1455 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER C 957 143.69 -35.99 REMARK 500 TYR D 956 62.66 -110.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 829 SG REMARK 620 2 CYS A 832 SG 111.2 REMARK 620 3 HIS A 849 ND1 105.7 94.9 REMARK 620 4 CYS A 852 SG 109.6 115.0 119.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 841 SG REMARK 620 2 CYS A 844 SG 111.0 REMARK 620 3 CYS A 867 SG 111.2 110.2 REMARK 620 4 CYS A 870 SG 113.3 102.8 108.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 829 SG REMARK 620 2 CYS B 832 SG 110.5 REMARK 620 3 HIS B 849 ND1 96.3 94.0 REMARK 620 4 CYS B 852 SG 113.3 119.0 120.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 841 SG REMARK 620 2 CYS B 844 SG 109.7 REMARK 620 3 CYS B 867 SG 108.4 113.6 REMARK 620 4 CYS B 870 SG 111.6 104.1 109.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 829 SG REMARK 620 2 CYS C 832 SG 110.7 REMARK 620 3 HIS C 849 ND1 96.4 95.0 REMARK 620 4 CYS C 852 SG 113.2 118.9 119.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 841 SG REMARK 620 2 CYS C 844 SG 108.4 REMARK 620 3 CYS C 867 SG 108.7 113.7 REMARK 620 4 CYS C 870 SG 112.9 103.3 109.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 829 SG REMARK 620 2 CYS D 832 SG 110.0 REMARK 620 3 HIS D 849 ND1 103.9 96.7 REMARK 620 4 CYS D 852 SG 109.3 115.4 120.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 841 SG REMARK 620 2 CYS D 844 SG 109.9 REMARK 620 3 CYS D 867 SG 111.3 111.5 REMARK 620 4 CYS D 870 SG 113.9 102.2 107.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7FF A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7FF B 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7FF C 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7FF D 1103 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5H1U RELATED DB: PDB REMARK 900 RELATED ID: 5H1V RELATED DB: PDB DBREF 5H1T A 824 1006 UNP O15164 TIF1A_HUMAN 824 1006 DBREF 5H1T B 824 1006 UNP O15164 TIF1A_HUMAN 824 1006 DBREF 5H1T C 824 1006 UNP O15164 TIF1A_HUMAN 824 1006 DBREF 5H1T D 824 1006 UNP O15164 TIF1A_HUMAN 824 1006 SEQRES 1 A 183 PRO ASN GLU ASP TRP CYS ALA VAL CYS GLN ASN GLY GLY SEQRES 2 A 183 GLU LEU LEU CYS CYS GLU LYS CYS PRO LYS VAL PHE HIS SEQRES 3 A 183 LEU SER CYS HIS VAL PRO THR LEU THR ASN PHE PRO SER SEQRES 4 A 183 GLY GLU TRP ILE CYS THR PHE CYS ARG ASP LEU SER LYS SEQRES 5 A 183 PRO GLU VAL GLU TYR ASP CYS ASP ALA PRO SER HIS ASN SEQRES 6 A 183 SER GLU LYS LYS LYS THR GLU GLY LEU VAL LYS LEU THR SEQRES 7 A 183 PRO ILE ASP LYS ARG LYS CYS GLU ARG LEU LEU LEU PHE SEQRES 8 A 183 LEU TYR CYS HIS GLU MET SER LEU ALA PHE GLN ASP PRO SEQRES 9 A 183 VAL PRO LEU THR VAL PRO ASP TYR TYR LYS ILE ILE LYS SEQRES 10 A 183 ASN PRO MET ASP LEU SER THR ILE LYS LYS ARG LEU GLN SEQRES 11 A 183 GLU ASP TYR SER MET TYR SER LYS PRO GLU ASP PHE VAL SEQRES 12 A 183 ALA ASP PHE ARG LEU ILE PHE GLN ASN CYS ALA GLU PHE SEQRES 13 A 183 ASN GLU PRO ASP SER GLU VAL ALA ASN ALA GLY ILE LYS SEQRES 14 A 183 LEU GLU ASN TYR PHE GLU GLU LEU LEU LYS ASN LEU TYR SEQRES 15 A 183 PRO SEQRES 1 B 183 PRO ASN GLU ASP TRP CYS ALA VAL CYS GLN ASN GLY GLY SEQRES 2 B 183 GLU LEU LEU CYS CYS GLU LYS CYS PRO LYS VAL PHE HIS SEQRES 3 B 183 LEU SER CYS HIS VAL PRO THR LEU THR ASN PHE PRO SER SEQRES 4 B 183 GLY GLU TRP ILE CYS THR PHE CYS ARG ASP LEU SER LYS SEQRES 5 B 183 PRO GLU VAL GLU TYR ASP CYS ASP ALA PRO SER HIS ASN SEQRES 6 B 183 SER GLU LYS LYS LYS THR GLU GLY LEU VAL LYS LEU THR SEQRES 7 B 183 PRO ILE ASP LYS ARG LYS CYS GLU ARG LEU LEU LEU PHE SEQRES 8 B 183 LEU TYR CYS HIS GLU MET SER LEU ALA PHE GLN ASP PRO SEQRES 9 B 183 VAL PRO LEU THR VAL PRO ASP TYR TYR LYS ILE ILE LYS SEQRES 10 B 183 ASN PRO MET ASP LEU SER THR ILE LYS LYS ARG LEU GLN SEQRES 11 B 183 GLU ASP TYR SER MET TYR SER LYS PRO GLU ASP PHE VAL SEQRES 12 B 183 ALA ASP PHE ARG LEU ILE PHE GLN ASN CYS ALA GLU PHE SEQRES 13 B 183 ASN GLU PRO ASP SER GLU VAL ALA ASN ALA GLY ILE LYS SEQRES 14 B 183 LEU GLU ASN TYR PHE GLU GLU LEU LEU LYS ASN LEU TYR SEQRES 15 B 183 PRO SEQRES 1 C 183 PRO ASN GLU ASP TRP CYS ALA VAL CYS GLN ASN GLY GLY SEQRES 2 C 183 GLU LEU LEU CYS CYS GLU LYS CYS PRO LYS VAL PHE HIS SEQRES 3 C 183 LEU SER CYS HIS VAL PRO THR LEU THR ASN PHE PRO SER SEQRES 4 C 183 GLY GLU TRP ILE CYS THR PHE CYS ARG ASP LEU SER LYS SEQRES 5 C 183 PRO GLU VAL GLU TYR ASP CYS ASP ALA PRO SER HIS ASN SEQRES 6 C 183 SER GLU LYS LYS LYS THR GLU GLY LEU VAL LYS LEU THR SEQRES 7 C 183 PRO ILE ASP LYS ARG LYS CYS GLU ARG LEU LEU LEU PHE SEQRES 8 C 183 LEU TYR CYS HIS GLU MET SER LEU ALA PHE GLN ASP PRO SEQRES 9 C 183 VAL PRO LEU THR VAL PRO ASP TYR TYR LYS ILE ILE LYS SEQRES 10 C 183 ASN PRO MET ASP LEU SER THR ILE LYS LYS ARG LEU GLN SEQRES 11 C 183 GLU ASP TYR SER MET TYR SER LYS PRO GLU ASP PHE VAL SEQRES 12 C 183 ALA ASP PHE ARG LEU ILE PHE GLN ASN CYS ALA GLU PHE SEQRES 13 C 183 ASN GLU PRO ASP SER GLU VAL ALA ASN ALA GLY ILE LYS SEQRES 14 C 183 LEU GLU ASN TYR PHE GLU GLU LEU LEU LYS ASN LEU TYR SEQRES 15 C 183 PRO SEQRES 1 D 183 PRO ASN GLU ASP TRP CYS ALA VAL CYS GLN ASN GLY GLY SEQRES 2 D 183 GLU LEU LEU CYS CYS GLU LYS CYS PRO LYS VAL PHE HIS SEQRES 3 D 183 LEU SER CYS HIS VAL PRO THR LEU THR ASN PHE PRO SER SEQRES 4 D 183 GLY GLU TRP ILE CYS THR PHE CYS ARG ASP LEU SER LYS SEQRES 5 D 183 PRO GLU VAL GLU TYR ASP CYS ASP ALA PRO SER HIS ASN SEQRES 6 D 183 SER GLU LYS LYS LYS THR GLU GLY LEU VAL LYS LEU THR SEQRES 7 D 183 PRO ILE ASP LYS ARG LYS CYS GLU ARG LEU LEU LEU PHE SEQRES 8 D 183 LEU TYR CYS HIS GLU MET SER LEU ALA PHE GLN ASP PRO SEQRES 9 D 183 VAL PRO LEU THR VAL PRO ASP TYR TYR LYS ILE ILE LYS SEQRES 10 D 183 ASN PRO MET ASP LEU SER THR ILE LYS LYS ARG LEU GLN SEQRES 11 D 183 GLU ASP TYR SER MET TYR SER LYS PRO GLU ASP PHE VAL SEQRES 12 D 183 ALA ASP PHE ARG LEU ILE PHE GLN ASN CYS ALA GLU PHE SEQRES 13 D 183 ASN GLU PRO ASP SER GLU VAL ALA ASN ALA GLY ILE LYS SEQRES 14 D 183 LEU GLU ASN TYR PHE GLU GLU LEU LEU LYS ASN LEU TYR SEQRES 15 D 183 PRO HET ZN A1101 1 HET ZN A1102 1 HET 7FF A1103 15 HET DMS A1104 10 HET ZN B1101 1 HET ZN B1102 1 HET 7FF B1103 15 HET DMS B1104 10 HET ZN C1101 1 HET ZN C1102 1 HET 7FF C1103 15 HET ZN D1101 1 HET ZN D1102 1 HET 7FF D1103 15 HETNAM ZN ZINC ION HETNAM 7FF METHYL 6-AZANYL-3,4-DIHYDRO-2H-QUINOLINE-1-CARBOXYLATE HETNAM DMS DIMETHYL SULFOXIDE FORMUL 5 ZN 8(ZN 2+) FORMUL 7 7FF 4(C11 H14 N2 O2) FORMUL 8 DMS 2(C2 H6 O S) FORMUL 19 HOH *242(H2 O) HELIX 1 AA1 THR A 901 HIS A 918 1 18 HELIX 2 AA2 GLU A 919 GLN A 925 5 7 HELIX 3 AA3 ASP A 934 ILE A 939 1 6 HELIX 4 AA4 ASP A 944 GLU A 954 1 11 HELIX 5 AA5 LYS A 961 ASN A 980 1 20 HELIX 6 AA6 SER A 984 TYR A 1005 1 22 HELIX 7 AA7 TYR B 880 ALA B 884 5 5 HELIX 8 AA8 THR B 901 HIS B 918 1 18 HELIX 9 AA9 SER B 921 ASP B 926 1 6 HELIX 10 AB1 ASP B 934 ILE B 939 1 6 HELIX 11 AB2 ASP B 944 GLU B 954 1 11 HELIX 12 AB3 LYS B 961 ASN B 980 1 20 HELIX 13 AB4 SER B 984 TYR B 1005 1 22 HELIX 14 AB5 TYR C 880 ALA C 884 5 5 HELIX 15 AB6 THR C 901 HIS C 918 1 18 HELIX 16 AB7 SER C 921 ASP C 926 1 6 HELIX 17 AB8 ASP C 934 ILE C 939 1 6 HELIX 18 AB9 ASP C 944 GLU C 954 1 11 HELIX 19 AC1 LYS C 961 ASN C 980 1 20 HELIX 20 AC2 SER C 984 TYR C 1005 1 22 HELIX 21 AC3 THR D 901 HIS D 918 1 18 HELIX 22 AC4 GLU D 919 GLN D 925 5 7 HELIX 23 AC5 ASP D 934 ILE D 939 1 6 HELIX 24 AC6 ASP D 944 GLU D 954 1 11 HELIX 25 AC7 LYS D 961 ASN D 980 1 20 HELIX 26 AC8 SER D 984 TYR D 1005 1 22 SHEET 1 AA1 2 LEU A 839 CYS A 840 0 SHEET 2 AA1 2 VAL A 847 PHE A 848 -1 O PHE A 848 N LEU A 839 SHEET 1 AA2 2 LEU B 839 CYS B 840 0 SHEET 2 AA2 2 VAL B 847 PHE B 848 -1 O PHE B 848 N LEU B 839 SHEET 1 AA3 2 LEU C 839 CYS C 840 0 SHEET 2 AA3 2 VAL C 847 PHE C 848 -1 O PHE C 848 N LEU C 839 SHEET 1 AA4 2 LEU D 839 CYS D 840 0 SHEET 2 AA4 2 VAL D 847 PHE D 848 -1 O PHE D 848 N LEU D 839 LINK SG CYS A 829 ZN ZN A1101 1555 1555 2.35 LINK SG CYS A 832 ZN ZN A1101 1555 1555 2.25 LINK SG CYS A 841 ZN ZN A1102 1555 1555 2.28 LINK SG CYS A 844 ZN ZN A1102 1555 1555 2.43 LINK ND1 HIS A 849 ZN ZN A1101 1555 1555 2.14 LINK SG CYS A 852 ZN ZN A1101 1555 1555 2.37 LINK SG CYS A 867 ZN ZN A1102 1555 1555 2.49 LINK SG CYS A 870 ZN ZN A1102 1555 1555 2.23 LINK SG CYS B 829 ZN ZN B1101 1555 1555 2.30 LINK SG CYS B 832 ZN ZN B1101 1555 1555 2.35 LINK SG CYS B 841 ZN ZN B1102 1555 1555 2.34 LINK SG CYS B 844 ZN ZN B1102 1555 1555 2.33 LINK ND1 HIS B 849 ZN ZN B1101 1555 1555 2.26 LINK SG CYS B 852 ZN ZN B1101 1555 1555 2.26 LINK SG CYS B 867 ZN ZN B1102 1555 1555 2.45 LINK SG CYS B 870 ZN ZN B1102 1555 1555 2.20 LINK SG CYS C 829 ZN ZN C1102 1555 1555 2.20 LINK SG CYS C 832 ZN ZN C1102 1555 1555 2.32 LINK SG CYS C 841 ZN ZN C1101 1555 1555 2.36 LINK SG CYS C 844 ZN ZN C1101 1555 1555 2.38 LINK ND1 HIS C 849 ZN ZN C1102 1555 1555 2.29 LINK SG CYS C 852 ZN ZN C1102 1555 1555 2.25 LINK SG CYS C 867 ZN ZN C1101 1555 1555 2.43 LINK SG CYS C 870 ZN ZN C1101 1555 1555 2.23 LINK SG CYS D 829 ZN ZN D1101 1555 1555 2.35 LINK SG CYS D 832 ZN ZN D1101 1555 1555 2.29 LINK SG CYS D 841 ZN ZN D1102 1555 1555 2.34 LINK SG CYS D 844 ZN ZN D1102 1555 1555 2.35 LINK ND1 HIS D 849 ZN ZN D1101 1555 1555 2.21 LINK SG CYS D 852 ZN ZN D1101 1555 1555 2.36 LINK SG CYS D 867 ZN ZN D1102 1555 1555 2.43 LINK SG CYS D 870 ZN ZN D1102 1555 1555 2.26 CISPEP 1 VAL A 854 PRO A 855 0 -2.63 CISPEP 2 VAL B 854 PRO B 855 0 -0.70 CISPEP 3 VAL C 854 PRO C 855 0 0.04 CISPEP 4 VAL D 854 PRO D 855 0 -1.48 SITE 1 AC1 4 CYS A 829 CYS A 832 HIS A 849 CYS A 852 SITE 1 AC2 4 CYS A 841 CYS A 844 CYS A 867 CYS A 870 SITE 1 AC3 7 ALA A 923 PHE A 924 PRO A 929 PHE A 979 SITE 2 AC3 7 ASN A 980 VAL A 986 HOH A1208 SITE 1 AC4 5 LYS A 846 PHE A 914 TYR A 956 TYR A 996 SITE 2 AC4 5 HOH A1215 SITE 1 AC5 4 CYS B 829 CYS B 832 HIS B 849 CYS B 852 SITE 1 AC6 4 CYS B 841 CYS B 844 CYS B 867 CYS B 870 SITE 1 AC7 4 ALA B 923 PHE B 924 ASN B 980 HOH B1203 SITE 1 AC8 2 PRO B 902 ARG B 906 SITE 1 AC9 4 CYS C 841 CYS C 844 CYS C 867 CYS C 870 SITE 1 AD1 4 CYS C 829 CYS C 832 HIS C 849 CYS C 852 SITE 1 AD2 5 ALA C 923 PHE C 924 PRO C 929 ASN C 980 SITE 2 AD2 5 HOH C1207 SITE 1 AD3 4 CYS D 829 CYS D 832 HIS D 849 CYS D 852 SITE 1 AD4 4 CYS D 841 CYS D 844 CYS D 867 CYS D 870 SITE 1 AD5 6 ALA D 923 VAL D 928 PRO D 929 PHE D 979 SITE 2 AD5 6 ASN D 980 HOH D1215 CRYST1 36.725 48.612 123.454 86.56 81.47 67.81 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027229 -0.011106 -0.004037 0.00000 SCALE2 0.000000 0.022216 -0.000095 0.00000 SCALE3 0.000000 0.000000 0.008191 0.00000