HEADER ISOMERASE 12-OCT-16 5H1W TITLE CRYSTAL STRUCTURE OF HYPERTHERMOPHILIC THERMOTOGA MARITIMA L-KETOSE-3- TITLE 2 EPIMERASE WITH MN2+ AND L(+)-ERYTHRULOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN TM_0416; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA MSB8; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 GENE: TM_0416; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) KEYWDS EPIMERASE, MN2+, HYPERTHERMOPHILIC, EUBACTERIUM, ISOMERASE, KEYWDS 2 ERYTHRULOSE EXPDTA X-RAY DIFFRACTION AUTHOR T.P.CAO,S.M.SHIN,D.W.LEE,S.H.LEE REVDAT 4 08-NOV-23 5H1W 1 LINK REVDAT 3 02-MAY-18 5H1W 1 JRNL REVDAT 2 06-DEC-17 5H1W 1 JRNL REVDAT 1 15-MAR-17 5H1W 0 JRNL AUTH S.M.SHIN,T.P.CAO,J.M.CHOI,S.B.KIM,S.J.LEE,S.H.LEE,D.W.LEE JRNL TITL TM0416, A HYPERTHERMOPHILIC PROMISCUOUS NONPHOSPHORYLATED JRNL TITL 2 SUGAR ISOMERASE, CATALYZES VARIOUS C5AND C6EPIMERIZATION JRNL TITL 3 REACTIONS JRNL REF APPL. ENVIRON. MICROBIOL. V. 83 2017 JRNL REFN ESSN 1098-5336 JRNL PMID 28258150 JRNL DOI 10.1128/AEM.03291-16 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 70450 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 3482 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.5132 - 4.7564 0.94 2612 157 0.1778 0.1903 REMARK 3 2 4.7564 - 3.7798 0.97 2701 135 0.1431 0.1464 REMARK 3 3 3.7798 - 3.3033 0.99 2761 136 0.1471 0.1479 REMARK 3 4 3.3033 - 3.0019 0.99 2783 131 0.1592 0.1720 REMARK 3 5 3.0019 - 2.7870 0.99 2769 127 0.1612 0.1707 REMARK 3 6 2.7870 - 2.6229 0.98 2752 132 0.1658 0.1882 REMARK 3 7 2.6229 - 2.4917 0.98 2772 131 0.1675 0.1910 REMARK 3 8 2.4917 - 2.3833 0.98 2730 159 0.1662 0.1934 REMARK 3 9 2.3833 - 2.2916 0.98 2720 138 0.1516 0.1902 REMARK 3 10 2.2916 - 2.2126 0.98 2745 156 0.1550 0.1677 REMARK 3 11 2.2126 - 2.1435 0.97 2740 118 0.1532 0.1931 REMARK 3 12 2.1435 - 2.0822 0.97 2722 138 0.1540 0.1759 REMARK 3 13 2.0822 - 2.0274 0.97 2715 143 0.1526 0.1771 REMARK 3 14 2.0274 - 1.9780 0.97 2700 140 0.1556 0.1717 REMARK 3 15 1.9780 - 1.9330 0.97 2684 153 0.1560 0.1944 REMARK 3 16 1.9330 - 1.8919 0.97 2712 141 0.1595 0.1629 REMARK 3 17 1.8919 - 1.8541 0.97 2697 151 0.1616 0.1982 REMARK 3 18 1.8541 - 1.8191 0.96 2736 132 0.1659 0.1822 REMARK 3 19 1.8191 - 1.7866 0.96 2633 134 0.1690 0.2057 REMARK 3 20 1.7866 - 1.7564 0.96 2701 157 0.1763 0.2439 REMARK 3 21 1.7564 - 1.7280 0.96 2649 153 0.1847 0.2374 REMARK 3 22 1.7280 - 1.7015 0.96 2739 146 0.1868 0.2281 REMARK 3 23 1.7015 - 1.6764 0.96 2603 137 0.1977 0.2535 REMARK 3 24 1.6764 - 1.6528 0.90 2555 146 0.2032 0.2328 REMARK 3 25 1.6528 - 1.6305 0.73 2037 91 0.1957 0.2081 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4458 REMARK 3 ANGLE : 1.264 5969 REMARK 3 CHIRALITY : 0.049 669 REMARK 3 PLANARITY : 0.005 762 REMARK 3 DIHEDRAL : 15.179 1689 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5H1W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1300001857. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : DCM SI (111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70454 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5JTX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, 5%(W/W) PEG1000, 20%(V/V) REMARK 280 PEG200, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 THR A 270 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 THR B 270 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 600 O HOH B 613 1.80 REMARK 500 O HOH B 624 O HOH B 647 1.81 REMARK 500 O HOH B 595 O HOH B 642 1.91 REMARK 500 OD2 ASP A 15 O HOH A 401 1.95 REMARK 500 O HOH A 602 O HOH A 670 1.97 REMARK 500 O HOH B 598 O HOH B 632 1.97 REMARK 500 O SER B 46 O HOH B 401 2.00 REMARK 500 O HOH A 602 O HOH A 651 2.03 REMARK 500 O HOH B 408 O HOH B 459 2.04 REMARK 500 O HOH B 610 O HOH B 622 2.05 REMARK 500 NH1 ARG A 167 O HOH A 402 2.05 REMARK 500 N HIS B 0 O HOH B 402 2.08 REMARK 500 O HOH A 423 O HOH A 512 2.08 REMARK 500 OE1 GLU A 139 O HOH A 403 2.10 REMARK 500 O HOH A 542 O HOH A 558 2.12 REMARK 500 O HOH A 536 O HOH A 573 2.12 REMARK 500 O HOH B 587 O HOH B 640 2.12 REMARK 500 O HOH A 605 O HOH A 665 2.12 REMARK 500 O HOH A 487 O HOH A 632 2.13 REMARK 500 O HOH A 438 O HOH A 580 2.13 REMARK 500 O HOH A 602 O HOH A 622 2.14 REMARK 500 O HOH A 445 O HOH A 596 2.15 REMARK 500 O HOH A 406 O HOH A 640 2.16 REMARK 500 O HOH B 564 O HOH B 624 2.17 REMARK 500 O HOH B 565 O HOH B 577 2.18 REMARK 500 O HOH B 504 O HOH B 573 2.18 REMARK 500 OH7 1PE A 303 O HOH A 404 2.19 REMARK 500 O HOH A 488 O HOH A 571 2.19 REMARK 500 OE2 GLU B 139 O HOH B 403 2.19 REMARK 500 OE2 GLU B 132 O HOH B 404 2.19 REMARK 500 O HOH A 624 O HOH A 661 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 599 O HOH B 610 1455 1.86 REMARK 500 O HOH A 405 O HOH B 606 1556 1.93 REMARK 500 O HOH A 615 O HOH B 491 1556 1.96 REMARK 500 O HOH A 462 O HOH B 558 1545 2.03 REMARK 500 O HOH A 650 O HOH B 603 1545 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 232 CB - CG - CD ANGL. DEV. = -22.3 DEGREES REMARK 500 LEU B 269 CA - CB - CG ANGL. DEV. = 17.9 DEGREES REMARK 500 LEU B 269 CB - CG - CD1 ANGL. DEV. = -10.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 15 99.71 -160.36 REMARK 500 ILE A 159 84.51 69.20 REMARK 500 ARG A 238 -148.66 -109.51 REMARK 500 ILE B 159 86.07 68.43 REMARK 500 ARG B 238 -156.02 -110.07 REMARK 500 LYS B 268 61.10 -59.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 268 LEU B 269 -145.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 678 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B 652 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B 653 DISTANCE = 6.50 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 149 OE2 REMARK 620 2 ASP A 182 OD2 92.6 REMARK 620 3 HIS A 208 ND1 98.3 106.8 REMARK 620 4 GLU A 243 OE1 175.8 88.4 85.3 REMARK 620 5 LER A 301 O1 85.2 167.0 86.2 92.9 REMARK 620 6 LER A 301 O2 87.6 98.7 153.4 88.2 68.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 149 OE2 REMARK 620 2 ASP B 182 OD2 93.1 REMARK 620 3 HIS B 208 ND1 98.7 105.6 REMARK 620 4 GLU B 243 OE1 172.8 85.6 88.4 REMARK 620 5 LER B 301 O1 85.2 168.1 86.3 94.6 REMARK 620 6 LER B 301 O2 85.6 98.7 155.0 87.6 69.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LER A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LER B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE B 303 DBREF 5H1W A 1 270 UNP Q9WYP7 Y416_THEMA 1 270 DBREF 5H1W B 1 270 UNP Q9WYP7 Y416_THEMA 1 270 SEQADV 5H1W MET A -19 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W GLY A -18 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W SER A -17 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W SER A -16 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W HIS A -15 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W HIS A -14 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W HIS A -13 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W HIS A -12 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W HIS A -11 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W HIS A -10 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W SER A -9 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W SER A -8 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W GLY A -7 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W LEU A -6 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W VAL A -5 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W PRO A -4 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W ARG A -3 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W GLY A -2 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W SER A -1 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W HIS A 0 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W MET B -19 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W GLY B -18 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W SER B -17 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W SER B -16 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W HIS B -15 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W HIS B -14 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W HIS B -13 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W HIS B -12 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W HIS B -11 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W HIS B -10 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W SER B -9 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W SER B -8 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W GLY B -7 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W LEU B -6 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W VAL B -5 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W PRO B -4 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W ARG B -3 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W GLY B -2 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W SER B -1 UNP Q9WYP7 EXPRESSION TAG SEQADV 5H1W HIS B 0 UNP Q9WYP7 EXPRESSION TAG SEQRES 1 A 290 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 290 LEU VAL PRO ARG GLY SER HIS MET LYS LEU SER LEU VAL SEQRES 3 A 290 ILE SER THR SER ASP ALA ALA PHE ASP ALA LEU ALA PHE SEQRES 4 A 290 LYS GLY ASP LEU ARG LYS GLY MET GLU LEU ALA LYS ARG SEQRES 5 A 290 VAL GLY TYR GLN ALA VAL GLU ILE ALA VAL ARG ASP PRO SEQRES 6 A 290 SER ILE VAL ASP TRP ASN GLU VAL LYS ILE LEU SER GLU SEQRES 7 A 290 GLU LEU ASN LEU PRO ILE CYS ALA ILE GLY THR GLY GLN SEQRES 8 A 290 ALA TYR LEU ALA ASP GLY LEU SER LEU THR HIS PRO ASN SEQRES 9 A 290 ASP GLU ILE ARG LYS LYS ALA ILE GLU ARG VAL VAL LYS SEQRES 10 A 290 HIS THR GLU VAL ALA GLY MET PHE GLY ALA LEU VAL ILE SEQRES 11 A 290 ILE GLY LEU VAL ARG GLY ARG ARG GLU GLY ARG SER TYR SEQRES 12 A 290 GLU GLU THR GLU GLU LEU PHE ILE GLU SER MET LYS ARG SEQRES 13 A 290 LEU LEU GLU LEU THR GLU HIS ALA LYS PHE VAL ILE GLU SEQRES 14 A 290 PRO LEU ASN ARG TYR GLU THR ASP PHE ILE ASN THR ILE SEQRES 15 A 290 ASP ASP ALA LEU ARG ILE LEU ARG LYS ILE ASN SER ASN SEQRES 16 A 290 ARG VAL GLY ILE LEU ALA ASP THR PHE HIS MET ASN ILE SEQRES 17 A 290 GLU GLU VAL ASN ILE PRO GLU SER LEU LYS ARG ALA GLY SEQRES 18 A 290 GLU LYS LEU TYR HIS PHE HIS VAL ALA ASP SER ASN ARG SEQRES 19 A 290 TRP ALA PRO GLY CYS GLY HIS PHE ASP PHE ARG SER VAL SEQRES 20 A 290 PHE ASN THR LEU LYS GLU ILE GLY TYR ASN ARG TYR VAL SEQRES 21 A 290 SER VAL GLU CYS LEU PRO LEU PRO GLY GLY MET GLU GLU SEQRES 22 A 290 ALA ALA GLU ILE ALA PHE LYS THR LEU LYS GLU LEU ILE SEQRES 23 A 290 ILE LYS LEU THR SEQRES 1 B 290 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 290 LEU VAL PRO ARG GLY SER HIS MET LYS LEU SER LEU VAL SEQRES 3 B 290 ILE SER THR SER ASP ALA ALA PHE ASP ALA LEU ALA PHE SEQRES 4 B 290 LYS GLY ASP LEU ARG LYS GLY MET GLU LEU ALA LYS ARG SEQRES 5 B 290 VAL GLY TYR GLN ALA VAL GLU ILE ALA VAL ARG ASP PRO SEQRES 6 B 290 SER ILE VAL ASP TRP ASN GLU VAL LYS ILE LEU SER GLU SEQRES 7 B 290 GLU LEU ASN LEU PRO ILE CYS ALA ILE GLY THR GLY GLN SEQRES 8 B 290 ALA TYR LEU ALA ASP GLY LEU SER LEU THR HIS PRO ASN SEQRES 9 B 290 ASP GLU ILE ARG LYS LYS ALA ILE GLU ARG VAL VAL LYS SEQRES 10 B 290 HIS THR GLU VAL ALA GLY MET PHE GLY ALA LEU VAL ILE SEQRES 11 B 290 ILE GLY LEU VAL ARG GLY ARG ARG GLU GLY ARG SER TYR SEQRES 12 B 290 GLU GLU THR GLU GLU LEU PHE ILE GLU SER MET LYS ARG SEQRES 13 B 290 LEU LEU GLU LEU THR GLU HIS ALA LYS PHE VAL ILE GLU SEQRES 14 B 290 PRO LEU ASN ARG TYR GLU THR ASP PHE ILE ASN THR ILE SEQRES 15 B 290 ASP ASP ALA LEU ARG ILE LEU ARG LYS ILE ASN SER ASN SEQRES 16 B 290 ARG VAL GLY ILE LEU ALA ASP THR PHE HIS MET ASN ILE SEQRES 17 B 290 GLU GLU VAL ASN ILE PRO GLU SER LEU LYS ARG ALA GLY SEQRES 18 B 290 GLU LYS LEU TYR HIS PHE HIS VAL ALA ASP SER ASN ARG SEQRES 19 B 290 TRP ALA PRO GLY CYS GLY HIS PHE ASP PHE ARG SER VAL SEQRES 20 B 290 PHE ASN THR LEU LYS GLU ILE GLY TYR ASN ARG TYR VAL SEQRES 21 B 290 SER VAL GLU CYS LEU PRO LEU PRO GLY GLY MET GLU GLU SEQRES 22 B 290 ALA ALA GLU ILE ALA PHE LYS THR LEU LYS GLU LEU ILE SEQRES 23 B 290 ILE LYS LEU THR HET LER A 301 8 HET MN A 302 1 HET 1PE A 303 16 HET 1PE A 304 16 HET LER B 301 8 HET MN B 302 1 HET 1PE B 303 16 HETNAM LER L-ERYTHRULOSE HETNAM MN MANGANESE (II) ION HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN LER (3S)-1,3,4-TRIHYDROXYBUTAN-2-ONE HETSYN 1PE PEG400 FORMUL 3 LER 2(C4 H8 O4) FORMUL 4 MN 2(MN 2+) FORMUL 5 1PE 3(C10 H22 O6) FORMUL 10 HOH *531(H2 O) HELIX 1 AA1 ASP A 15 GLY A 34 1 20 HELIX 2 AA2 ASP A 44 VAL A 48 5 5 HELIX 3 AA3 ASP A 49 ASN A 61 1 13 HELIX 4 AA4 GLY A 70 ALA A 75 1 6 HELIX 5 AA5 ASN A 84 GLY A 106 1 23 HELIX 6 AA6 GLY A 112 GLY A 116 5 5 HELIX 7 AA7 SER A 122 THR A 141 1 20 HELIX 8 AA8 THR A 161 ASN A 173 1 13 HELIX 9 AA9 THR A 183 GLU A 190 1 8 HELIX 10 AB1 ASN A 192 GLY A 201 1 10 HELIX 11 AB2 ASP A 223 ILE A 234 1 12 HELIX 12 AB3 GLY A 250 LYS A 268 1 19 HELIX 13 AB4 ASP B 15 GLY B 34 1 20 HELIX 14 AB5 ASP B 44 VAL B 48 5 5 HELIX 15 AB6 ASP B 49 ASN B 61 1 13 HELIX 16 AB7 GLY B 70 ALA B 75 1 6 HELIX 17 AB8 ASN B 84 GLY B 106 1 23 HELIX 18 AB9 GLY B 112 GLY B 116 5 5 HELIX 19 AC1 SER B 122 THR B 141 1 20 HELIX 20 AC2 THR B 161 ASN B 173 1 13 HELIX 21 AC3 THR B 183 GLU B 190 1 8 HELIX 22 AC4 ASN B 192 GLY B 201 1 10 HELIX 23 AC5 ASP B 223 ILE B 234 1 12 HELIX 24 AC6 GLY B 250 LYS B 268 1 19 SHEET 1 AA1 9 LYS A 2 VAL A 6 0 SHEET 2 AA1 9 ALA A 37 ALA A 41 1 O GLU A 39 N LEU A 5 SHEET 3 AA1 9 ILE A 64 GLY A 68 1 O GLY A 68 N ILE A 40 SHEET 4 AA1 9 LEU A 108 ILE A 111 1 O LEU A 108 N ILE A 67 SHEET 5 AA1 9 PHE A 146 ILE A 148 1 O VAL A 147 N ILE A 111 SHEET 6 AA1 9 VAL A 177 ASP A 182 1 O GLY A 178 N ILE A 148 SHEET 7 AA1 9 LEU A 204 VAL A 209 1 O HIS A 208 N ALA A 181 SHEET 8 AA1 9 TYR A 239 VAL A 242 1 O SER A 241 N PHE A 207 SHEET 9 AA1 9 LYS A 2 VAL A 6 1 N LYS A 2 O VAL A 240 SHEET 1 AA2 9 LYS B 2 VAL B 6 0 SHEET 2 AA2 9 ALA B 37 ALA B 41 1 O GLU B 39 N LEU B 5 SHEET 3 AA2 9 ILE B 64 GLY B 68 1 O GLY B 68 N ILE B 40 SHEET 4 AA2 9 LEU B 108 ILE B 111 1 O LEU B 108 N ILE B 67 SHEET 5 AA2 9 PHE B 146 ILE B 148 1 O VAL B 147 N ILE B 111 SHEET 6 AA2 9 VAL B 177 ASP B 182 1 O GLY B 178 N ILE B 148 SHEET 7 AA2 9 LEU B 204 VAL B 209 1 O HIS B 208 N ALA B 181 SHEET 8 AA2 9 TYR B 239 VAL B 242 1 O SER B 241 N PHE B 207 SHEET 9 AA2 9 LYS B 2 VAL B 6 1 N LYS B 2 O VAL B 240 LINK OE2 GLU A 149 MN MN A 302 1555 1555 2.10 LINK OD2 ASP A 182 MN MN A 302 1555 1555 2.12 LINK ND1 HIS A 208 MN MN A 302 1555 1555 2.29 LINK OE1 GLU A 243 MN MN A 302 1555 1555 2.17 LINK O1 LER A 301 MN MN A 302 1555 1555 2.37 LINK O2 LER A 301 MN MN A 302 1555 1555 2.29 LINK OE2 GLU B 149 MN MN B 302 1555 1555 2.13 LINK OD2 ASP B 182 MN MN B 302 1555 1555 2.13 LINK ND1 HIS B 208 MN MN B 302 1555 1555 2.24 LINK OE1 GLU B 243 MN MN B 302 1555 1555 2.16 LINK O1 LER B 301 MN MN B 302 1555 1555 2.34 LINK O2 LER B 301 MN MN B 302 1555 1555 2.32 CISPEP 1 LEU A 247 PRO A 248 0 -0.63 CISPEP 2 LEU B 247 PRO B 248 0 -0.77 SITE 1 AC1 9 GLU A 149 GLU A 155 ASP A 182 HIS A 185 SITE 2 AC1 9 HIS A 208 ARG A 214 GLU A 243 MN A 302 SITE 3 AC1 9 HOH A 510 SITE 1 AC2 5 GLU A 149 ASP A 182 HIS A 208 GLU A 243 SITE 2 AC2 5 LER A 301 SITE 1 AC3 7 LEU A 108 HIS A 143 LYS A 145 ASN A 175 SITE 2 AC3 7 TYR A 205 ARG A 238 HOH A 404 SITE 1 AC4 10 MET A 1 GLY A 34 GLN A 36 GLU A 125 SITE 2 AC4 10 GLU A 128 LEU A 129 PHE A 259 LYS A 263 SITE 3 AC4 10 ILE A 266 ILE A 267 SITE 1 AC5 8 GLU B 149 GLU B 155 ASP B 182 HIS B 185 SITE 2 AC5 8 HIS B 208 ARG B 214 GLU B 243 MN B 302 SITE 1 AC6 5 GLU B 149 ASP B 182 HIS B 208 GLU B 243 SITE 2 AC6 5 LER B 301 SITE 1 AC7 8 LEU A 140 GLY B 106 LEU B 108 LYS B 145 SITE 2 AC7 8 ASN B 175 TYR B 205 ARG B 238 HOH B 458 CRYST1 50.238 55.411 59.004 107.48 102.14 91.70 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019905 0.000593 0.004705 0.00000 SCALE2 0.000000 0.018055 0.005965 0.00000 SCALE3 0.000000 0.000000 0.018257 0.00000