HEADER LIPID BINDING PROTEIN 24-OCT-16 5H3I TITLE CRYSTAL STRUCTURE OF ORYZA SATIVA ACYL-COA-BINDING PROTEIN 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ACYL-COA-BINDING PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ACYL-COA-BINDING PROTEIN 2,OS06G0115300 PROTEIN,CDNA COMPND 5 CLONE:001-004-B07,FULL INSERT SEQUENCE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA JAPONICA GROUP; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 GENE: OSJNBA0019F11.14, P0541H01.36, OS06G0115300, OSJ_19900; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ACYL-COA-BINDING DOMAIN, LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.K.W.KONG,Z.-H.GUO REVDAT 2 08-NOV-23 5H3I 1 REMARK REVDAT 1 17-MAY-17 5H3I 0 JRNL AUTH Z.-H.GUO,W.H.Y.CHAN,G.K.W.KONG,Q.HAO,M.-L.CHYE JRNL TITL THE FIRST PLANT ACYL-COA-BINDING PROTEIN STRUCTURES: THE JRNL TITL 2 CLOSE HOMOLOGUES OSACBP1 AND OSACBP2 FROM RICE JRNL REF ACTA CRYSTALLOGR D STRUCT V. 73 438 2017 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 28471368 JRNL DOI 10.1107/S2059798317004193 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.5 REMARK 3 NUMBER OF REFLECTIONS : 14101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 706 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.3305 - 3.9348 0.99 3577 172 0.2015 0.2209 REMARK 3 2 3.9348 - 3.1235 0.85 2881 144 0.1983 0.2487 REMARK 3 3 3.1235 - 2.7288 1.00 3316 175 0.2521 0.2755 REMARK 3 4 2.7288 - 2.4793 0.69 2257 135 0.2859 0.3125 REMARK 3 5 2.4793 - 2.3016 0.42 1364 80 0.2508 0.2883 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3005 REMARK 3 ANGLE : 0.387 4051 REMARK 3 CHIRALITY : 0.030 436 REMARK 3 PLANARITY : 0.003 509 REMARK 3 DIHEDRAL : 12.299 1812 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 2:16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.328 32.970 10.607 REMARK 3 T TENSOR REMARK 3 T11: 0.3750 T22: 0.3851 REMARK 3 T33: 0.3021 T12: -0.0861 REMARK 3 T13: 0.0413 T23: -0.1276 REMARK 3 L TENSOR REMARK 3 L11: 3.3925 L22: 6.0375 REMARK 3 L33: 1.0540 L12: -1.2731 REMARK 3 L13: -1.1705 L23: 0.6023 REMARK 3 S TENSOR REMARK 3 S11: 0.1360 S12: 0.2704 S13: 0.3851 REMARK 3 S21: -0.3721 S22: 0.2461 S23: -1.1039 REMARK 3 S31: -0.3924 S32: 0.1544 S33: -0.3547 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 17:38 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2637 20.7102 11.4759 REMARK 3 T TENSOR REMARK 3 T11: 0.1411 T22: 0.2019 REMARK 3 T33: 0.2420 T12: -0.0087 REMARK 3 T13: -0.0572 T23: -0.0682 REMARK 3 L TENSOR REMARK 3 L11: 3.0725 L22: 2.4330 REMARK 3 L33: 2.0943 L12: -0.4551 REMARK 3 L13: 0.6151 L23: 0.1543 REMARK 3 S TENSOR REMARK 3 S11: 0.4445 S12: -0.1746 S13: -0.1364 REMARK 3 S21: 0.2195 S22: 0.1085 S23: -0.4682 REMARK 3 S31: 0.2278 S32: 0.2113 S33: -0.3456 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 39:67 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5753 15.8229 3.7126 REMARK 3 T TENSOR REMARK 3 T11: 0.2194 T22: 0.2126 REMARK 3 T33: 0.1954 T12: -0.0304 REMARK 3 T13: 0.0634 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 3.8977 L22: 5.5137 REMARK 3 L33: 1.9716 L12: 1.0408 REMARK 3 L13: -0.1944 L23: -0.0401 REMARK 3 S TENSOR REMARK 3 S11: -0.1192 S12: 0.0363 S13: -0.5585 REMARK 3 S21: -0.3992 S22: -0.0002 S23: -0.6406 REMARK 3 S31: 0.4073 S32: 0.0423 S33: 0.1636 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 68:91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2980 28.6166 18.6176 REMARK 3 T TENSOR REMARK 3 T11: 0.1642 T22: 0.1744 REMARK 3 T33: 0.1900 T12: -0.0025 REMARK 3 T13: -0.0069 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 4.8769 L22: 4.2733 REMARK 3 L33: 5.8167 L12: -0.2361 REMARK 3 L13: 1.3454 L23: -0.2441 REMARK 3 S TENSOR REMARK 3 S11: -0.1837 S12: -0.3050 S13: -0.2449 REMARK 3 S21: 0.3283 S22: 0.1884 S23: -0.4884 REMARK 3 S31: -0.4807 S32: 0.5112 S33: 0.0752 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 2:16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.4280 -6.6090 -2.5284 REMARK 3 T TENSOR REMARK 3 T11: 0.0300 T22: 0.4767 REMARK 3 T33: 0.7614 T12: -0.0202 REMARK 3 T13: 0.0686 T23: -0.0697 REMARK 3 L TENSOR REMARK 3 L11: 0.4471 L22: 0.7870 REMARK 3 L33: 2.5157 L12: -0.5963 REMARK 3 L13: 0.1990 L23: 0.8626 REMARK 3 S TENSOR REMARK 3 S11: -0.1627 S12: 0.3293 S13: 0.1460 REMARK 3 S21: -0.3063 S22: -0.0959 S23: 1.3945 REMARK 3 S31: 1.1215 S32: -1.1562 S33: 0.3162 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 17:38 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.0117 8.0830 -0.4723 REMARK 3 T TENSOR REMARK 3 T11: 0.1638 T22: 0.2219 REMARK 3 T33: 0.4162 T12: -0.0112 REMARK 3 T13: -0.0038 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.7311 L22: 3.5870 REMARK 3 L33: 2.2659 L12: 0.3003 REMARK 3 L13: -0.0038 L23: 0.4683 REMARK 3 S TENSOR REMARK 3 S11: 0.1652 S12: 0.1081 S13: 0.3789 REMARK 3 S21: 0.3936 S22: -0.3229 S23: 0.7926 REMARK 3 S31: -0.0584 S32: -0.4168 S33: 0.1812 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 39:67 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.9346 12.0079 -8.8392 REMARK 3 T TENSOR REMARK 3 T11: 0.3507 T22: 0.2206 REMARK 3 T33: 0.2466 T12: -0.0171 REMARK 3 T13: -0.1084 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 3.0958 L22: 5.3212 REMARK 3 L33: 1.2956 L12: 0.0839 REMARK 3 L13: -0.9560 L23: 1.0451 REMARK 3 S TENSOR REMARK 3 S11: 0.0359 S12: 0.0350 S13: 0.6775 REMARK 3 S21: -1.0635 S22: 0.1900 S23: 0.7879 REMARK 3 S31: -0.1291 S32: 0.0256 S33: -0.1195 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 68:90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.8621 -0.6136 5.5712 REMARK 3 T TENSOR REMARK 3 T11: 0.2256 T22: 0.1636 REMARK 3 T33: 0.2346 T12: -0.0118 REMARK 3 T13: 0.0676 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 6.1123 L22: 4.4091 REMARK 3 L33: 3.8797 L12: -0.7626 REMARK 3 L13: -1.1804 L23: 0.3984 REMARK 3 S TENSOR REMARK 3 S11: -0.5673 S12: -0.4869 S13: -0.0907 REMARK 3 S21: 0.8386 S22: 0.1835 S23: 0.4929 REMARK 3 S31: 0.7202 S32: -0.2171 S33: 0.3397 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN C AND RESID -3:16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.6854 48.5569 11.3405 REMARK 3 T TENSOR REMARK 3 T11: 0.3789 T22: 0.2937 REMARK 3 T33: 0.2284 T12: 0.1475 REMARK 3 T13: -0.0245 T23: 0.0738 REMARK 3 L TENSOR REMARK 3 L11: 3.9322 L22: 4.4851 REMARK 3 L33: 3.3157 L12: 2.7741 REMARK 3 L13: 0.2227 L23: -0.5364 REMARK 3 S TENSOR REMARK 3 S11: -0.0829 S12: -0.9471 S13: 0.7136 REMARK 3 S21: 0.6366 S22: 0.0065 S23: 0.4885 REMARK 3 S31: -0.9363 S32: 0.0880 S33: 0.0608 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN C AND RESID 17:38 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.5420 33.2407 16.2575 REMARK 3 T TENSOR REMARK 3 T11: 0.1982 T22: 0.1772 REMARK 3 T33: 0.2362 T12: 0.0057 REMARK 3 T13: -0.0464 T23: 0.0850 REMARK 3 L TENSOR REMARK 3 L11: 4.2726 L22: 4.4971 REMARK 3 L33: 4.0523 L12: -0.1822 REMARK 3 L13: -0.7323 L23: 0.1096 REMARK 3 S TENSOR REMARK 3 S11: 0.1286 S12: -0.2276 S13: -0.2219 REMARK 3 S21: -0.2088 S22: 0.0484 S23: 0.7414 REMARK 3 S31: 0.0777 S32: -0.4606 S33: -0.1905 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN C AND RESID 39:67 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.7392 28.5634 23.4254 REMARK 3 T TENSOR REMARK 3 T11: 0.1810 T22: 0.1445 REMARK 3 T33: 0.2060 T12: 0.0066 REMARK 3 T13: -0.0307 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 0.7904 L22: 1.5853 REMARK 3 L33: 3.1867 L12: -0.0838 REMARK 3 L13: 0.2390 L23: -0.3565 REMARK 3 S TENSOR REMARK 3 S11: 0.1396 S12: 0.0206 S13: -0.1906 REMARK 3 S21: 0.2069 S22: -0.0385 S23: 0.3456 REMARK 3 S31: -0.1101 S32: -0.2454 S33: -0.1281 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: ( CHAIN C AND RESID 68:88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.2500 37.8398 7.3273 REMARK 3 T TENSOR REMARK 3 T11: 0.2227 T22: 0.2403 REMARK 3 T33: 0.1618 T12: 0.0356 REMARK 3 T13: -0.0537 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 4.7063 L22: 5.9867 REMARK 3 L33: 2.8505 L12: 1.7291 REMARK 3 L13: -1.9866 L23: -0.1066 REMARK 3 S TENSOR REMARK 3 S11: 0.1261 S12: 0.7148 S13: 0.2762 REMARK 3 S21: -0.5137 S22: -0.0797 S23: 0.6897 REMARK 3 S31: 0.3370 S32: -0.1209 S33: -0.0852 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: ( CHAIN D AND RESID -3:16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8886 -21.1433 -1.3392 REMARK 3 T TENSOR REMARK 3 T11: 0.2373 T22: 0.1855 REMARK 3 T33: 0.2156 T12: 0.0880 REMARK 3 T13: -0.0189 T23: -0.0493 REMARK 3 L TENSOR REMARK 3 L11: 8.7934 L22: 4.3466 REMARK 3 L33: 3.3444 L12: 3.7223 REMARK 3 L13: 1.0803 L23: 0.7214 REMARK 3 S TENSOR REMARK 3 S11: 0.2928 S12: 0.0317 S13: -0.8012 REMARK 3 S21: 0.3807 S22: -0.0849 S23: -0.4034 REMARK 3 S31: 0.5976 S32: 0.0899 S33: -0.2596 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: ( CHAIN D AND RESID 17:38 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9543 -6.1337 3.5973 REMARK 3 T TENSOR REMARK 3 T11: 0.1695 T22: 0.2042 REMARK 3 T33: 0.2345 T12: 0.0151 REMARK 3 T13: 0.0309 T23: -0.0422 REMARK 3 L TENSOR REMARK 3 L11: 6.4700 L22: 3.2845 REMARK 3 L33: 3.1541 L12: 0.8775 REMARK 3 L13: -0.0636 L23: -0.0212 REMARK 3 S TENSOR REMARK 3 S11: 0.0126 S12: -0.0824 S13: 0.2329 REMARK 3 S21: -0.2336 S22: 0.0350 S23: -0.6144 REMARK 3 S31: -0.0332 S32: 0.4523 S33: -0.0930 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: ( CHAIN D AND RESID 39:67 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5323 -1.3259 11.0223 REMARK 3 T TENSOR REMARK 3 T11: 0.1795 T22: 0.1215 REMARK 3 T33: 0.1599 T12: -0.0141 REMARK 3 T13: 0.0063 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 3.4851 L22: 3.4877 REMARK 3 L33: 2.7881 L12: -0.8856 REMARK 3 L13: -0.2642 L23: 0.1477 REMARK 3 S TENSOR REMARK 3 S11: 0.0757 S12: -0.4465 S13: 0.6102 REMARK 3 S21: -0.0459 S22: -0.1867 S23: -0.4617 REMARK 3 S31: 0.0559 S32: 0.0007 S33: 0.0864 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: ( CHAIN D AND RESID 68:90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0144 -10.6981 -5.5374 REMARK 3 T TENSOR REMARK 3 T11: 0.1988 T22: 0.1730 REMARK 3 T33: 0.3243 T12: 0.0306 REMARK 3 T13: 0.0700 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 7.8241 L22: 3.6156 REMARK 3 L33: 4.2273 L12: -0.3014 REMARK 3 L13: -2.0877 L23: 0.1322 REMARK 3 S TENSOR REMARK 3 S11: 0.5048 S12: 0.7005 S13: -0.0159 REMARK 3 S21: -0.4212 S22: -0.4840 S23: -0.9247 REMARK 3 S31: -0.4777 S32: 0.1557 S33: 0.0172 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5H3I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1300001947. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979158 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18120 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 43.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 200 DATA REDUNDANCY : 6.840 REMARK 200 R MERGE (I) : 0.17000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.76 REMARK 200 R MERGE FOR SHELL (I) : 1.42200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5DLN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE, 0.10 M MGCL2, REMARK 280 26%(W/V) PEG 4000, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 50.28500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 72.52500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.28500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 72.52500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 243 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A -3 REMARK 465 TRP A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ARG B -3 REMARK 465 TRP B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 91 REMARK 465 SER C 89 REMARK 465 THR C 90 REMARK 465 SER C 91 REMARK 465 SER D 91 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 55 OD2 ASP D 58 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN C 50 72.52 -112.75 REMARK 500 SER C 87 35.97 -86.63 REMARK 500 ASN D 50 70.64 -104.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 284 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 285 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 286 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A 287 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A 288 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 289 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A 290 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH A 291 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH A 292 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH A 293 DISTANCE = 8.07 ANGSTROMS REMARK 525 HOH A 294 DISTANCE = 8.32 ANGSTROMS REMARK 525 HOH A 295 DISTANCE = 8.66 ANGSTROMS REMARK 525 HOH A 296 DISTANCE = 9.05 ANGSTROMS REMARK 525 HOH A 297 DISTANCE = 9.42 ANGSTROMS REMARK 525 HOH B 279 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH B 280 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH B 281 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH B 282 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH B 283 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH B 284 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH B 285 DISTANCE = 7.52 ANGSTROMS REMARK 525 HOH B 286 DISTANCE = 7.75 ANGSTROMS REMARK 525 HOH B 287 DISTANCE = 8.29 ANGSTROMS REMARK 525 HOH B 288 DISTANCE = 8.46 ANGSTROMS REMARK 525 HOH B 289 DISTANCE = 9.89 ANGSTROMS REMARK 525 HOH C 172 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH C 173 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH C 174 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH C 175 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH C 176 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH C 177 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH C 178 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH C 179 DISTANCE = 7.23 ANGSTROMS REMARK 525 HOH C 180 DISTANCE = 7.89 ANGSTROMS REMARK 525 HOH C 181 DISTANCE = 7.99 ANGSTROMS REMARK 525 HOH C 182 DISTANCE = 8.94 ANGSTROMS REMARK 525 HOH C 183 DISTANCE = 9.05 ANGSTROMS REMARK 525 HOH C 184 DISTANCE = 9.49 ANGSTROMS REMARK 525 HOH D 266 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH D 267 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH D 268 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH D 269 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH D 270 DISTANCE = 7.48 ANGSTROMS REMARK 525 HOH D 271 DISTANCE = 8.24 ANGSTROMS REMARK 525 HOH D 272 DISTANCE = 8.79 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD D 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5H3G RELATED DB: PDB DBREF 5H3I A 1 91 UNP Q5VRM0 Q5VRM0_ORYSJ 1 91 DBREF 5H3I B 1 91 UNP Q5VRM0 Q5VRM0_ORYSJ 1 91 DBREF 5H3I C 1 91 UNP Q5VRM0 Q5VRM0_ORYSJ 1 91 DBREF 5H3I D 1 91 UNP Q5VRM0 Q5VRM0_ORYSJ 1 91 SEQADV 5H3I ARG A -3 UNP Q5VRM0 EXPRESSION TAG SEQADV 5H3I TRP A -2 UNP Q5VRM0 EXPRESSION TAG SEQADV 5H3I GLY A -1 UNP Q5VRM0 EXPRESSION TAG SEQADV 5H3I SER A 0 UNP Q5VRM0 EXPRESSION TAG SEQADV 5H3I ARG B -3 UNP Q5VRM0 EXPRESSION TAG SEQADV 5H3I TRP B -2 UNP Q5VRM0 EXPRESSION TAG SEQADV 5H3I GLY B -1 UNP Q5VRM0 EXPRESSION TAG SEQADV 5H3I SER B 0 UNP Q5VRM0 EXPRESSION TAG SEQADV 5H3I ARG C -3 UNP Q5VRM0 EXPRESSION TAG SEQADV 5H3I TRP C -2 UNP Q5VRM0 EXPRESSION TAG SEQADV 5H3I GLY C -1 UNP Q5VRM0 EXPRESSION TAG SEQADV 5H3I SER C 0 UNP Q5VRM0 EXPRESSION TAG SEQADV 5H3I ARG D -3 UNP Q5VRM0 EXPRESSION TAG SEQADV 5H3I TRP D -2 UNP Q5VRM0 EXPRESSION TAG SEQADV 5H3I GLY D -1 UNP Q5VRM0 EXPRESSION TAG SEQADV 5H3I SER D 0 UNP Q5VRM0 EXPRESSION TAG SEQRES 1 A 95 ARG TRP GLY SER MET GLY LEU GLN GLU GLU PHE GLU GLU SEQRES 2 A 95 PHE ALA GLU LYS ALA LYS THR LEU PRO ASP THR ILE SER SEQRES 3 A 95 ASN GLU ASP LYS LEU LEU LEU TYR GLY LEU TYR LYS GLN SEQRES 4 A 95 ALA THR VAL GLY PRO VAL THR THR GLY ARG PRO GLY ILE SEQRES 5 A 95 PHE ASN LEU LYS ASP ARG TYR LYS TRP ASP ALA TRP LYS SEQRES 6 A 95 ALA VAL GLU GLY LYS SER LYS GLU GLU ALA MET ALA ASP SEQRES 7 A 95 TYR ILE THR LYS VAL LYS GLN LEU LEU GLU GLU ALA SER SEQRES 8 A 95 ALA SER THR SER SEQRES 1 B 95 ARG TRP GLY SER MET GLY LEU GLN GLU GLU PHE GLU GLU SEQRES 2 B 95 PHE ALA GLU LYS ALA LYS THR LEU PRO ASP THR ILE SER SEQRES 3 B 95 ASN GLU ASP LYS LEU LEU LEU TYR GLY LEU TYR LYS GLN SEQRES 4 B 95 ALA THR VAL GLY PRO VAL THR THR GLY ARG PRO GLY ILE SEQRES 5 B 95 PHE ASN LEU LYS ASP ARG TYR LYS TRP ASP ALA TRP LYS SEQRES 6 B 95 ALA VAL GLU GLY LYS SER LYS GLU GLU ALA MET ALA ASP SEQRES 7 B 95 TYR ILE THR LYS VAL LYS GLN LEU LEU GLU GLU ALA SER SEQRES 8 B 95 ALA SER THR SER SEQRES 1 C 95 ARG TRP GLY SER MET GLY LEU GLN GLU GLU PHE GLU GLU SEQRES 2 C 95 PHE ALA GLU LYS ALA LYS THR LEU PRO ASP THR ILE SER SEQRES 3 C 95 ASN GLU ASP LYS LEU LEU LEU TYR GLY LEU TYR LYS GLN SEQRES 4 C 95 ALA THR VAL GLY PRO VAL THR THR GLY ARG PRO GLY ILE SEQRES 5 C 95 PHE ASN LEU LYS ASP ARG TYR LYS TRP ASP ALA TRP LYS SEQRES 6 C 95 ALA VAL GLU GLY LYS SER LYS GLU GLU ALA MET ALA ASP SEQRES 7 C 95 TYR ILE THR LYS VAL LYS GLN LEU LEU GLU GLU ALA SER SEQRES 8 C 95 ALA SER THR SER SEQRES 1 D 95 ARG TRP GLY SER MET GLY LEU GLN GLU GLU PHE GLU GLU SEQRES 2 D 95 PHE ALA GLU LYS ALA LYS THR LEU PRO ASP THR ILE SER SEQRES 3 D 95 ASN GLU ASP LYS LEU LEU LEU TYR GLY LEU TYR LYS GLN SEQRES 4 D 95 ALA THR VAL GLY PRO VAL THR THR GLY ARG PRO GLY ILE SEQRES 5 D 95 PHE ASN LEU LYS ASP ARG TYR LYS TRP ASP ALA TRP LYS SEQRES 6 D 95 ALA VAL GLU GLY LYS SER LYS GLU GLU ALA MET ALA ASP SEQRES 7 D 95 TYR ILE THR LYS VAL LYS GLN LEU LEU GLU GLU ALA SER SEQRES 8 D 95 ALA SER THR SER HET MPD A 101 8 HET MPD B 101 8 HET MPD B 102 8 HET ACT B 103 4 HET MPD D 101 8 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM ACT ACETATE ION FORMUL 5 MPD 4(C6 H14 O2) FORMUL 8 ACT C2 H3 O2 1- FORMUL 10 HOH *342(H2 O) HELIX 1 AA1 GLY A 2 THR A 16 1 15 HELIX 2 AA2 SER A 22 VAL A 38 1 17 HELIX 3 AA3 ASN A 50 VAL A 63 1 14 HELIX 4 AA4 SER A 67 ALA A 88 1 22 HELIX 5 AA5 LEU B 3 THR B 16 1 14 HELIX 6 AA6 SER B 22 VAL B 38 1 17 HELIX 7 AA7 ASN B 50 VAL B 63 1 14 HELIX 8 AA8 SER B 67 ALA B 88 1 22 HELIX 9 AA9 TRP C -2 LYS C 15 1 18 HELIX 10 AB1 SER C 22 VAL C 38 1 17 HELIX 11 AB2 ASN C 50 VAL C 63 1 14 HELIX 12 AB3 SER C 67 SER C 87 1 21 HELIX 13 AB4 TRP D -2 ALA D 14 1 17 HELIX 14 AB5 LYS D 15 LEU D 17 5 3 HELIX 15 AB6 SER D 22 VAL D 38 1 17 HELIX 16 AB7 ASN D 50 ALA D 62 1 13 HELIX 17 AB8 SER D 67 SER D 87 1 21 SITE 1 AC1 3 TYR A 33 TYR A 75 ALA A 88 SITE 1 AC2 4 LEU B 27 LEU B 28 ALA B 59 HOH B 223 SITE 1 AC3 3 LEU B 27 LYS B 56 HOH B 229 SITE 1 AC4 5 PRO B 46 GLY B 47 GLY C 47 ILE C 48 SITE 2 AC4 5 PHE C 49 SITE 1 AC5 5 ALA D 11 ALA D 14 LYS D 15 TYR D 33 SITE 2 AC5 5 TYR D 75 CRYST1 100.570 145.050 25.890 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009943 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006894 0.000000 0.00000 SCALE3 0.000000 0.000000 0.038625 0.00000