HEADER PROTEIN BINDING 31-OCT-16 5H4B TITLE CRYSTAL STRUCTURE OF CBLN4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CEREBELLIN-4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CEREBELLIN-LIKE GLYCOPROTEIN 1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CBLN4, CBLNL1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS CBLN1, CBLN4, C1Q DOMAIN, C1Q/TNF SUPERFAMILY, NEUREXIN, RECEPTOR KEYWDS 2 SPECIFICITY, SYNAPTOGENESIS, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.ZHONG,J.SHEN,H.ZHANG,J.DING REVDAT 4 29-JUL-20 5H4B 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 17-JAN-18 5H4B 1 JRNL REVDAT 2 20-SEP-17 5H4B 1 JRNL REVDAT 1 13-SEP-17 5H4B 0 JRNL AUTH C.ZHONG,J.SHEN,H.ZHANG,G.LI,S.SHEN,F.WANG,K.HU,L.CAO,Y.HE, JRNL AUTH 2 J.DING JRNL TITL CBLN1 AND CBLN4 ARE STRUCTURALLY SIMILAR BUT DIFFER IN GLUD2 JRNL TITL 2 BINDING INTERACTIONS. JRNL REF CELL REP V. 20 2328 2017 JRNL REFN ESSN 2211-1247 JRNL PMID 28877468 JRNL DOI 10.1016/J.CELREP.2017.08.031 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.ZHONG,J.SHEN,H.ZHANG,G.LI,S.SHEN,F.WANG,K.HU,L.CAO,Y.HE, REMARK 1 AUTH 2 J.DING REMARK 1 TITL CBLN1 AND CBLN4 ARE STRUCTURALLY SIMILAR BUT DIFFER IN GLUD2 REMARK 1 TITL 2 BINDING INTERACTIONS. REMARK 1 REF CELL REP V. 20 2328 2017 REMARK 1 REFN ESSN 2211-1247 REMARK 1 PMID 28877468 REMARK 1 DOI 10.1016/J.CELREP.2017.08.031 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 9781 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 493 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 586 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.5120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1077 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.270 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.224 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.169 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1116 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1511 ; 1.299 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 135 ; 6.569 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 49 ;34.351 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 187 ;18.141 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;11.146 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 172 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 837 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5H4B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1300001847. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NFPSS REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9788 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10335 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5 M NACL, NA/K PHOSPHATE, PH6.2, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 66.17850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.17850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.17850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.17850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 66.17850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.17850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 66.17850 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 66.17850 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 66.17850 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 66.17850 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 66.17850 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 66.17850 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 66.17850 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 66.17850 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 66.17850 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 66.17850 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 66.17850 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 66.17850 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 33.08925 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 99.26775 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 99.26775 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 33.08925 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 33.08925 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 33.08925 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 99.26775 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 99.26775 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 33.08925 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 99.26775 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 33.08925 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 99.26775 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 33.08925 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 99.26775 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 99.26775 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 99.26775 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 33.08925 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 99.26775 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 33.08925 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 33.08925 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 33.08925 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 99.26775 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 99.26775 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 33.08925 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 33.08925 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 99.26775 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 99.26775 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 99.26775 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 99.26775 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 33.08925 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 99.26775 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 33.08925 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 99.26775 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 33.08925 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 33.08925 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 33.08925 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 7 REMARK 465 GLN A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 ALA A 17 REMARK 465 SER A 18 REMARK 465 GLN A 19 REMARK 465 ASN A 20 REMARK 465 ASP A 21 REMARK 465 THR A 22 REMARK 465 GLU A 23 REMARK 465 PRO A 24 REMARK 465 ILE A 25 REMARK 465 VAL A 26 REMARK 465 LEU A 27 REMARK 465 GLU A 28 REMARK 465 GLY A 29 REMARK 465 LYS A 30 REMARK 465 CYS A 31 REMARK 465 LEU A 32 REMARK 465 VAL A 33 REMARK 465 VAL A 34 REMARK 465 CYS A 35 REMARK 465 ASP A 36 REMARK 465 SER A 37 REMARK 465 ASN A 38 REMARK 465 PRO A 39 REMARK 465 ALA A 40 REMARK 465 THR A 41 REMARK 465 ASP A 42 REMARK 465 SER A 43 REMARK 465 LYS A 44 REMARK 465 GLY A 45 REMARK 465 SER A 46 REMARK 465 SER A 47 REMARK 465 SER A 48 REMARK 465 SER A 49 REMARK 465 PRO A 50 REMARK 465 LEU A 51 REMARK 465 GLY A 52 REMARK 465 ILE A 53 REMARK 465 SER A 54 REMARK 465 VAL A 55 REMARK 465 ARG A 56 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 116 CG HIS A 116 CD2 0.056 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 92 63.31 -158.10 REMARK 500 SER A 101 -35.20 -152.10 REMARK 500 TYR A 181 -3.59 79.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5H48 RELATED DB: PDB REMARK 900 RELATED ID: 5H49 RELATED DB: PDB REMARK 900 RELATED ID: 5H4C RELATED DB: PDB DBREF 5H4B A 19 192 UNP Q8BME9 CBLN4_MOUSE 25 198 SEQADV 5H4B LEU A 7 UNP Q8BME9 EXPRESSION TAG SEQADV 5H4B GLN A 8 UNP Q8BME9 EXPRESSION TAG SEQADV 5H4B HIS A 9 UNP Q8BME9 EXPRESSION TAG SEQADV 5H4B HIS A 10 UNP Q8BME9 EXPRESSION TAG SEQADV 5H4B HIS A 11 UNP Q8BME9 EXPRESSION TAG SEQADV 5H4B HIS A 12 UNP Q8BME9 EXPRESSION TAG SEQADV 5H4B HIS A 13 UNP Q8BME9 EXPRESSION TAG SEQADV 5H4B HIS A 14 UNP Q8BME9 EXPRESSION TAG SEQADV 5H4B HIS A 15 UNP Q8BME9 EXPRESSION TAG SEQADV 5H4B HIS A 16 UNP Q8BME9 EXPRESSION TAG SEQADV 5H4B ALA A 17 UNP Q8BME9 EXPRESSION TAG SEQADV 5H4B SER A 18 UNP Q8BME9 EXPRESSION TAG SEQRES 1 A 186 LEU GLN HIS HIS HIS HIS HIS HIS HIS HIS ALA SER GLN SEQRES 2 A 186 ASN ASP THR GLU PRO ILE VAL LEU GLU GLY LYS CYS LEU SEQRES 3 A 186 VAL VAL CYS ASP SER ASN PRO ALA THR ASP SER LYS GLY SEQRES 4 A 186 SER SER SER SER PRO LEU GLY ILE SER VAL ARG ALA ALA SEQRES 5 A 186 ASN SER LYS VAL ALA PHE SER ALA VAL ARG SER THR ASN SEQRES 6 A 186 HIS GLU PRO SER GLU MET SER ASN LYS THR ARG ILE ILE SEQRES 7 A 186 TYR PHE ASP GLN ILE LEU VAL ASN VAL GLY ASN PHE PHE SEQRES 8 A 186 THR LEU GLU SER VAL PHE VAL ALA PRO ARG LYS GLY ILE SEQRES 9 A 186 TYR SER PHE SER PHE HIS VAL ILE LYS VAL TYR GLN SER SEQRES 10 A 186 GLN THR ILE GLN VAL ASN LEU MET LEU ASN GLY LYS PRO SEQRES 11 A 186 VAL ILE SER ALA PHE ALA GLY ASP LYS ASP VAL THR ARG SEQRES 12 A 186 GLU ALA ALA THR ASN GLY VAL LEU LEU TYR LEU ASP LYS SEQRES 13 A 186 GLU ASP LYS VAL TYR LEU LYS LEU GLU LYS GLY ASN LEU SEQRES 14 A 186 LEU GLY GLY TRP GLN TYR SER THR PHE SER GLY PHE LEU SEQRES 15 A 186 VAL PHE PRO LEU MODRES 5H4B NAG A 201 NAG -D HET NAG A 201 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE FORMUL 2 NAG C8 H15 N O6 FORMUL 3 HOH *23(H2 O) HELIX 1 AA1 SER A 75 ARG A 82 1 8 SHEET 1 AA1 5 GLN A 88 VAL A 93 0 SHEET 2 AA1 5 ALA A 63 VAL A 67 -1 N VAL A 67 O GLN A 88 SHEET 3 AA1 5 THR A 183 PRO A 191 -1 O GLY A 186 N PHE A 64 SHEET 4 AA1 5 GLY A 109 LYS A 119 -1 N SER A 114 O SER A 185 SHEET 5 AA1 5 GLU A 150 LEU A 160 -1 O LEU A 160 N GLY A 109 SHEET 1 AA2 5 PHE A 97 THR A 98 0 SHEET 2 AA2 5 VAL A 102 VAL A 104 -1 O VAL A 102 N THR A 98 SHEET 3 AA2 5 LYS A 165 LYS A 172 -1 O VAL A 166 N PHE A 103 SHEET 4 AA2 5 ILE A 126 LEU A 132 -1 N MET A 131 O TYR A 167 SHEET 5 AA2 5 LYS A 135 ALA A 142 -1 O VAL A 137 N LEU A 130 LINK ND2 ASN A 79 C1 NAG A 201 1555 1555 1.43 CISPEP 1 SER A 123 GLN A 124 0 15.45 CISPEP 2 THR A 148 ARG A 149 0 -0.84 CRYST1 132.357 132.357 132.357 90.00 90.00 90.00 P 43 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007555 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007555 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007555 0.00000