HEADER PROTEIN BINDING 31-OCT-16 5H4C TITLE CRYSTAL STRUCTURE OF CBLN4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN CBLN4; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: CEREBELLIN 4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: CBLN4, LOC499947, RCG_40881; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS C1Q DOMAIN, C1Q/TNF SUPERFAMILY, NEUREXIN, RECEPTOR SPECIFICITY, KEYWDS 2 SYNAPTOGENESIS, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.ZHONG,J.SHEN,H.ZHANG,J.DING REVDAT 4 16-OCT-24 5H4C 1 HETSYN REVDAT 3 29-JUL-20 5H4C 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 20-SEP-17 5H4C 1 JRNL REVDAT 1 06-SEP-17 5H4C 0 JRNL AUTH C.ZHONG,J.SHEN,H.ZHANG,G.LI,S.SHEN,F.WANG,K.HU,L.CAO,Y.HE, JRNL AUTH 2 J.DING JRNL TITL CBLN1 AND CBLN4 ARE STRUCTURALLY SIMILAR BUT DIFFER IN GLUD2 JRNL TITL 2 BINDING INTERACTIONS. JRNL REF CELL REP V. 20 2328 2017 JRNL REFN ESSN 2211-1247 JRNL PMID 28877468 JRNL DOI 10.1016/J.CELREP.2017.08.031 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 28393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1392 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1763 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3185 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : 0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.209 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.699 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3281 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4440 ; 1.132 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 399 ; 5.959 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;33.904 ;24.178 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 557 ;11.553 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;14.640 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 502 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2459 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5H4C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1300001848. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9199 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-325 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28464 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% TACSIMATE, PH 7.0, 12% PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.34650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.59900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.59900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 111.51975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.59900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.59900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.17325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.59900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.59900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 111.51975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.59900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.59900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.17325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.34650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 13 REMARK 465 GLN A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 HIS A 22 REMARK 465 ALA A 23 REMARK 465 SER A 24 REMARK 465 GLN A 25 REMARK 465 ASN A 26 REMARK 465 ASP A 27 REMARK 465 THR A 28 REMARK 465 GLU A 29 REMARK 465 PRO A 30 REMARK 465 ILE A 31 REMARK 465 VAL A 32 REMARK 465 LEU A 33 REMARK 465 GLU A 34 REMARK 465 GLY A 35 REMARK 465 LYS A 36 REMARK 465 CYS A 37 REMARK 465 LEU A 38 REMARK 465 VAL A 39 REMARK 465 VAL A 40 REMARK 465 CYS A 41 REMARK 465 ASP A 42 REMARK 465 SER A 43 REMARK 465 ASN A 44 REMARK 465 PRO A 45 REMARK 465 ALA A 46 REMARK 465 THR A 47 REMARK 465 ASP A 48 REMARK 465 SER A 49 REMARK 465 LYS A 50 REMARK 465 GLY A 51 REMARK 465 SER A 52 REMARK 465 SER A 53 REMARK 465 SER A 54 REMARK 465 SER A 55 REMARK 465 PRO A 56 REMARK 465 LEU A 57 REMARK 465 GLY A 58 REMARK 465 ILE A 59 REMARK 465 SER A 60 REMARK 465 VAL A 61 REMARK 465 ARG A 62 REMARK 465 ALA A 63 REMARK 465 ALA A 64 REMARK 465 LEU B 13 REMARK 465 GLN B 14 REMARK 465 HIS B 15 REMARK 465 HIS B 16 REMARK 465 HIS B 17 REMARK 465 HIS B 18 REMARK 465 HIS B 19 REMARK 465 HIS B 20 REMARK 465 HIS B 21 REMARK 465 HIS B 22 REMARK 465 ALA B 23 REMARK 465 SER B 24 REMARK 465 GLN B 25 REMARK 465 ASN B 26 REMARK 465 ASP B 27 REMARK 465 THR B 28 REMARK 465 GLU B 29 REMARK 465 PRO B 30 REMARK 465 ILE B 31 REMARK 465 VAL B 32 REMARK 465 LEU B 33 REMARK 465 GLU B 34 REMARK 465 GLY B 35 REMARK 465 LYS B 36 REMARK 465 CYS B 37 REMARK 465 LEU B 38 REMARK 465 VAL B 39 REMARK 465 VAL B 40 REMARK 465 CYS B 41 REMARK 465 ASP B 42 REMARK 465 SER B 43 REMARK 465 ASN B 44 REMARK 465 PRO B 45 REMARK 465 ALA B 46 REMARK 465 THR B 47 REMARK 465 ASP B 48 REMARK 465 SER B 49 REMARK 465 LYS B 50 REMARK 465 GLY B 51 REMARK 465 SER B 52 REMARK 465 SER B 53 REMARK 465 SER B 54 REMARK 465 SER B 55 REMARK 465 PRO B 56 REMARK 465 LEU B 57 REMARK 465 GLY B 58 REMARK 465 ILE B 59 REMARK 465 SER B 60 REMARK 465 VAL B 61 REMARK 465 ARG B 62 REMARK 465 ALA B 63 REMARK 465 LEU C 13 REMARK 465 GLN C 14 REMARK 465 HIS C 15 REMARK 465 HIS C 16 REMARK 465 HIS C 17 REMARK 465 HIS C 18 REMARK 465 HIS C 19 REMARK 465 HIS C 20 REMARK 465 HIS C 21 REMARK 465 HIS C 22 REMARK 465 ALA C 23 REMARK 465 SER C 24 REMARK 465 GLN C 25 REMARK 465 ASN C 26 REMARK 465 ASP C 27 REMARK 465 THR C 28 REMARK 465 GLU C 29 REMARK 465 PRO C 30 REMARK 465 ILE C 31 REMARK 465 VAL C 32 REMARK 465 LEU C 33 REMARK 465 GLU C 34 REMARK 465 GLY C 35 REMARK 465 LYS C 36 REMARK 465 CYS C 37 REMARK 465 LEU C 38 REMARK 465 VAL C 39 REMARK 465 VAL C 40 REMARK 465 CYS C 41 REMARK 465 ASP C 42 REMARK 465 SER C 43 REMARK 465 ASN C 44 REMARK 465 PRO C 45 REMARK 465 ALA C 46 REMARK 465 THR C 47 REMARK 465 ASP C 48 REMARK 465 SER C 49 REMARK 465 LYS C 50 REMARK 465 GLY C 51 REMARK 465 SER C 52 REMARK 465 SER C 53 REMARK 465 SER C 54 REMARK 465 SER C 55 REMARK 465 PRO C 56 REMARK 465 LEU C 57 REMARK 465 GLY C 58 REMARK 465 ILE C 59 REMARK 465 SER C 60 REMARK 465 VAL C 61 REMARK 465 ARG C 62 REMARK 465 ALA C 63 REMARK 465 PRO C 80 REMARK 465 SER C 81 REMARK 465 GLU C 82 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU C 79 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 248 O HOH C 210 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 122 CG HIS A 122 CD2 0.060 REMARK 500 HIS B 122 CG HIS B 122 CD2 0.061 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 98 63.44 -160.44 REMARK 500 THR A 154 -71.43 -68.02 REMARK 500 TYR A 187 -6.07 80.77 REMARK 500 ASN B 98 60.20 -156.10 REMARK 500 SER B 107 -31.91 -159.65 REMARK 500 ASP B 152 51.44 36.16 REMARK 500 GLU B 169 -3.07 75.34 REMARK 500 TYR B 187 -4.98 79.58 REMARK 500 SER C 75 -150.79 -96.32 REMARK 500 THR C 76 41.80 -108.13 REMARK 500 ASN C 98 60.67 -158.57 REMARK 500 SER C 107 -39.77 -155.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5H48 RELATED DB: PDB REMARK 900 RELATED ID: 5H49 RELATED DB: PDB REMARK 900 RELATED ID: 5H4B RELATED DB: PDB DBREF 5H4C A 25 198 UNP D4ABJ2 D4ABJ2_RAT 25 198 DBREF 5H4C B 25 198 UNP D4ABJ2 D4ABJ2_RAT 25 198 DBREF 5H4C C 25 198 UNP D4ABJ2 D4ABJ2_RAT 25 198 SEQADV 5H4C LEU A 13 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C GLN A 14 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C HIS A 15 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C HIS A 16 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C HIS A 17 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C HIS A 18 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C HIS A 19 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C HIS A 20 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C HIS A 21 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C HIS A 22 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C ALA A 23 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C SER A 24 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C LEU B 13 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C GLN B 14 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C HIS B 15 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C HIS B 16 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C HIS B 17 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C HIS B 18 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C HIS B 19 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C HIS B 20 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C HIS B 21 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C HIS B 22 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C ALA B 23 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C SER B 24 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C LEU C 13 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C GLN C 14 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C HIS C 15 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C HIS C 16 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C HIS C 17 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C HIS C 18 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C HIS C 19 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C HIS C 20 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C HIS C 21 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C HIS C 22 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C ALA C 23 UNP D4ABJ2 EXPRESSION TAG SEQADV 5H4C SER C 24 UNP D4ABJ2 EXPRESSION TAG SEQRES 1 A 186 LEU GLN HIS HIS HIS HIS HIS HIS HIS HIS ALA SER GLN SEQRES 2 A 186 ASN ASP THR GLU PRO ILE VAL LEU GLU GLY LYS CYS LEU SEQRES 3 A 186 VAL VAL CYS ASP SER ASN PRO ALA THR ASP SER LYS GLY SEQRES 4 A 186 SER SER SER SER PRO LEU GLY ILE SER VAL ARG ALA ALA SEQRES 5 A 186 ASN SER LYS VAL ALA PHE SER ALA VAL ARG SER THR ASN SEQRES 6 A 186 HIS GLU PRO SER GLU MET SER ASN LYS THR ARG ILE ILE SEQRES 7 A 186 TYR PHE ASP GLN ILE LEU VAL ASN VAL GLY ASN PHE PHE SEQRES 8 A 186 THR LEU GLU SER VAL PHE VAL ALA PRO ARG LYS GLY ILE SEQRES 9 A 186 TYR SER PHE SER PHE HIS VAL ILE LYS VAL TYR GLN SER SEQRES 10 A 186 GLN THR ILE GLN VAL ASN LEU MET LEU ASN GLY LYS PRO SEQRES 11 A 186 VAL ILE SER ALA PHE ALA GLY ASP LYS ASP VAL THR ARG SEQRES 12 A 186 GLU ALA ALA THR ASN GLY VAL LEU LEU TYR LEU ASP LYS SEQRES 13 A 186 GLU ASP LYS VAL TYR LEU LYS LEU GLU LYS GLY ASN LEU SEQRES 14 A 186 LEU GLY GLY TRP GLN TYR SER THR PHE SER GLY PHE LEU SEQRES 15 A 186 VAL PHE PRO LEU SEQRES 1 B 186 LEU GLN HIS HIS HIS HIS HIS HIS HIS HIS ALA SER GLN SEQRES 2 B 186 ASN ASP THR GLU PRO ILE VAL LEU GLU GLY LYS CYS LEU SEQRES 3 B 186 VAL VAL CYS ASP SER ASN PRO ALA THR ASP SER LYS GLY SEQRES 4 B 186 SER SER SER SER PRO LEU GLY ILE SER VAL ARG ALA ALA SEQRES 5 B 186 ASN SER LYS VAL ALA PHE SER ALA VAL ARG SER THR ASN SEQRES 6 B 186 HIS GLU PRO SER GLU MET SER ASN LYS THR ARG ILE ILE SEQRES 7 B 186 TYR PHE ASP GLN ILE LEU VAL ASN VAL GLY ASN PHE PHE SEQRES 8 B 186 THR LEU GLU SER VAL PHE VAL ALA PRO ARG LYS GLY ILE SEQRES 9 B 186 TYR SER PHE SER PHE HIS VAL ILE LYS VAL TYR GLN SER SEQRES 10 B 186 GLN THR ILE GLN VAL ASN LEU MET LEU ASN GLY LYS PRO SEQRES 11 B 186 VAL ILE SER ALA PHE ALA GLY ASP LYS ASP VAL THR ARG SEQRES 12 B 186 GLU ALA ALA THR ASN GLY VAL LEU LEU TYR LEU ASP LYS SEQRES 13 B 186 GLU ASP LYS VAL TYR LEU LYS LEU GLU LYS GLY ASN LEU SEQRES 14 B 186 LEU GLY GLY TRP GLN TYR SER THR PHE SER GLY PHE LEU SEQRES 15 B 186 VAL PHE PRO LEU SEQRES 1 C 186 LEU GLN HIS HIS HIS HIS HIS HIS HIS HIS ALA SER GLN SEQRES 2 C 186 ASN ASP THR GLU PRO ILE VAL LEU GLU GLY LYS CYS LEU SEQRES 3 C 186 VAL VAL CYS ASP SER ASN PRO ALA THR ASP SER LYS GLY SEQRES 4 C 186 SER SER SER SER PRO LEU GLY ILE SER VAL ARG ALA ALA SEQRES 5 C 186 ASN SER LYS VAL ALA PHE SER ALA VAL ARG SER THR ASN SEQRES 6 C 186 HIS GLU PRO SER GLU MET SER ASN LYS THR ARG ILE ILE SEQRES 7 C 186 TYR PHE ASP GLN ILE LEU VAL ASN VAL GLY ASN PHE PHE SEQRES 8 C 186 THR LEU GLU SER VAL PHE VAL ALA PRO ARG LYS GLY ILE SEQRES 9 C 186 TYR SER PHE SER PHE HIS VAL ILE LYS VAL TYR GLN SER SEQRES 10 C 186 GLN THR ILE GLN VAL ASN LEU MET LEU ASN GLY LYS PRO SEQRES 11 C 186 VAL ILE SER ALA PHE ALA GLY ASP LYS ASP VAL THR ARG SEQRES 12 C 186 GLU ALA ALA THR ASN GLY VAL LEU LEU TYR LEU ASP LYS SEQRES 13 C 186 GLU ASP LYS VAL TYR LEU LYS LEU GLU LYS GLY ASN LEU SEQRES 14 C 186 LEU GLY GLY TRP GLN TYR SER THR PHE SER GLY PHE LEU SEQRES 15 C 186 VAL PHE PRO LEU MODRES 5H4C NAG A 201 NAG -D HET NAG A 201 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG C8 H15 N O6 FORMUL 5 HOH *208(H2 O) HELIX 1 AA1 SER A 81 ARG A 88 1 8 HELIX 2 AA2 MET B 83 ARG B 88 1 6 SHEET 1 AA1 5 GLN A 94 VAL A 99 0 SHEET 2 AA1 5 ALA A 69 VAL A 73 -1 N VAL A 73 O GLN A 94 SHEET 3 AA1 5 THR A 189 PRO A 197 -1 O GLY A 192 N PHE A 70 SHEET 4 AA1 5 GLY A 115 LYS A 125 -1 N SER A 120 O SER A 191 SHEET 5 AA1 5 GLU A 156 LEU A 166 -1 O LEU A 164 N TYR A 117 SHEET 1 AA2 4 PHE A 109 VAL A 110 0 SHEET 2 AA2 4 LYS A 171 LYS A 178 -1 O VAL A 172 N PHE A 109 SHEET 3 AA2 4 ILE A 132 LEU A 138 -1 N MET A 137 O TYR A 173 SHEET 4 AA2 4 LYS A 141 ALA A 148 -1 O LYS A 141 N LEU A 138 SHEET 1 AA3 5 GLN B 94 VAL B 99 0 SHEET 2 AA3 5 ALA B 69 VAL B 73 -1 N SER B 71 O VAL B 97 SHEET 3 AA3 5 THR B 189 PRO B 197 -1 O GLY B 192 N PHE B 70 SHEET 4 AA3 5 GLY B 115 VAL B 126 -1 N ILE B 116 O VAL B 195 SHEET 5 AA3 5 ARG B 155 LEU B 166 -1 O LEU B 164 N TYR B 117 SHEET 1 AA4 5 PHE B 103 THR B 104 0 SHEET 2 AA4 5 VAL B 108 VAL B 110 -1 O VAL B 108 N THR B 104 SHEET 3 AA4 5 LYS B 171 LYS B 178 -1 O VAL B 172 N PHE B 109 SHEET 4 AA4 5 ILE B 132 LEU B 138 -1 N MET B 137 O TYR B 173 SHEET 5 AA4 5 LYS B 141 ALA B 148 -1 O VAL B 143 N LEU B 136 SHEET 1 AA5 5 GLN C 94 VAL C 99 0 SHEET 2 AA5 5 ALA C 69 VAL C 73 -1 N VAL C 73 O GLN C 94 SHEET 3 AA5 5 THR C 189 PRO C 197 -1 O GLY C 192 N PHE C 70 SHEET 4 AA5 5 GLY C 115 LYS C 125 -1 N SER C 118 O PHE C 193 SHEET 5 AA5 5 GLU C 156 LEU C 166 -1 O GLU C 156 N LYS C 125 SHEET 1 AA6 5 PHE C 103 THR C 104 0 SHEET 2 AA6 5 VAL C 108 VAL C 110 -1 O VAL C 108 N THR C 104 SHEET 3 AA6 5 LYS C 171 LYS C 178 -1 O VAL C 172 N PHE C 109 SHEET 4 AA6 5 ILE C 132 LEU C 138 -1 N MET C 137 O TYR C 173 SHEET 5 AA6 5 LYS C 141 ALA C 148 -1 O LYS C 141 N LEU C 138 LINK ND2 ASN A 85 C1 NAG A 201 1555 1555 1.44 CISPEP 1 TYR B 127 GLN B 128 0 -1.73 CRYST1 91.198 91.198 148.693 90.00 90.00 90.00 P 43 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010965 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010965 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006725 0.00000