HEADER LIPID BINDING PROTEIN 04-NOV-16 5H55 TITLE MDM12 FROM K. LACTIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL DISTRIBUTION AND MORPHOLOGY PROTEIN 12; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MITOCHONDRIAL INHERITANCE COMPONENT MDM12; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLUYVEROMYCES LACTIS (STRAIN ATCC 8585 / CBS SOURCE 3 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37); SOURCE 4 ORGANISM_COMMON: YEAST; SOURCE 5 ORGANISM_TAXID: 284590; SOURCE 6 STRAIN: ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / SOURCE 7 WM37; SOURCE 8 GENE: MDM12, KLLA0C06028G; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.KAWANO,S.QUINBARA REVDAT 4 20-MAR-24 5H55 1 REMARK REVDAT 3 21-MAR-18 5H55 1 JRNL REVDAT 2 28-FEB-18 5H55 1 JRNL REVDAT 1 08-NOV-17 5H55 0 JRNL AUTH S.KAWANO,Y.TAMURA,R.KOJIMA,S.BALA,E.ASAI,A.H.MICHEL, JRNL AUTH 2 B.KORNMANN,I.RIEZMAN,H.RIEZMAN,Y.SAKAE,Y.OKAMOTO,T.ENDO JRNL TITL STRUCTURE-FUNCTION INSIGHTS INTO DIRECT LIPID TRANSFER JRNL TITL 2 BETWEEN MEMBRANES BY MMM1-MDM12 OF ERMES JRNL REF J. CELL BIOL. V. 217 959 2018 JRNL REFN ESSN 1540-8140 JRNL PMID 29279306 JRNL DOI 10.1083/JCB.201704119 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 5467 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.260 REMARK 3 FREE R VALUE : 0.323 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 260 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 378 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE SET COUNT : 19 REMARK 3 BIN FREE R VALUE : 0.4060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1596 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.11000 REMARK 3 B12 (A**2) : -0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.621 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.477 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.762 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.894 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.849 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1621 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1541 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2200 ; 1.290 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3534 ; 0.763 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 203 ; 8.275 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;42.461 ;25.694 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 275 ;20.309 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;10.193 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 261 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1820 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 341 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 824 ; 3.459 ; 7.973 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 823 ; 3.452 ; 7.971 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1023 ; 5.727 ;11.938 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1024 ; 5.724 ;11.940 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 797 ; 3.310 ; 8.133 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 795 ; 3.285 ; 8.127 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1177 ; 5.707 ;12.100 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1803 ; 9.138 ;62.602 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1802 ; 9.144 ;62.586 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5H55 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1300002045. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 535031 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.310 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NA-MALATE PH 7.0, 15 - 20% REMARK 280 PEG3400, 0.1M TRIS-HCL PH8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.53400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.06800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.30100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.83500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 12.76700 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 25.53400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 51.06800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 63.83500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 38.30100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 12.76700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 LEU A 70 REMARK 465 LEU A 71 REMARK 465 GLN A 72 REMARK 465 GLU A 73 REMARK 465 GLY A 74 REMARK 465 ASP A 75 REMARK 465 ILE A 76 REMARK 465 SER A 77 REMARK 465 LYS A 78 REMARK 465 GLU A 79 REMARK 465 ALA A 80 REMARK 465 ALA A 81 REMARK 465 LYS A 82 REMARK 465 ASP A 83 REMARK 465 LYS A 84 REMARK 465 LEU A 110 REMARK 465 ASN A 111 REMARK 465 TYR A 112 REMARK 465 PRO A 113 REMARK 465 SER A 114 REMARK 465 PRO A 115 REMARK 465 LEU A 192 REMARK 465 GLY A 193 REMARK 465 GLN A 194 REMARK 465 LEU A 195 REMARK 465 ASP A 196 REMARK 465 GLN A 197 REMARK 465 PHE A 235 REMARK 465 THR A 236 REMARK 465 PRO A 237 REMARK 465 GLU A 238 REMARK 465 ASP A 239 REMARK 465 PRO A 240 REMARK 465 GLU A 241 REMARK 465 ASP A 242 REMARK 465 PRO A 243 REMARK 465 GLU A 244 REMARK 465 GLU A 245 REMARK 465 GLU A 246 REMARK 465 GLY A 247 REMARK 465 ARG A 248 REMARK 465 GLU A 249 REMARK 465 ASN A 250 REMARK 465 ASP A 251 REMARK 465 LEU A 252 REMARK 465 VAL A 253 REMARK 465 ALA A 254 REMARK 465 ASP A 255 REMARK 465 SER A 256 REMARK 465 SER A 257 REMARK 465 ASN A 258 REMARK 465 ASP A 259 REMARK 465 GLY A 260 REMARK 465 LYS A 261 REMARK 465 ASP A 262 REMARK 465 ILE A 263 REMARK 465 GLU A 264 REMARK 465 MET A 265 REMARK 465 LYS A 266 REMARK 465 SER A 267 REMARK 465 GLY A 268 REMARK 465 THR A 269 REMARK 465 GLU A 270 REMARK 465 GLU A 271 REMARK 465 THR A 272 REMARK 465 LEU A 273 REMARK 465 GLY A 274 REMARK 465 ALA A 275 REMARK 465 GLY A 276 REMARK 465 ILE A 277 REMARK 465 GLN A 278 REMARK 465 GLU A 279 REMARK 465 SER A 280 REMARK 465 VAL A 281 REMARK 465 GLN A 282 REMARK 465 HIS A 283 REMARK 465 VAL A 284 REMARK 465 SER A 285 REMARK 465 PRO A 286 REMARK 465 ALA A 287 REMARK 465 VAL A 288 REMARK 465 THR A 289 REMARK 465 SER A 290 REMARK 465 ILE A 291 REMARK 465 ASP A 292 REMARK 465 GLN A 293 REMARK 465 GLU A 294 REMARK 465 SER A 295 REMARK 465 ARG A 296 REMARK 465 VAL A 297 REMARK 465 ASN A 298 REMARK 465 SER A 299 REMARK 465 ASN A 300 REMARK 465 THR A 301 REMARK 465 SER A 302 REMARK 465 LEU A 303 REMARK 465 GLU A 304 REMARK 465 GLU A 305 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LEU A 14 CG CD1 CD2 REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 TYR A 69 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A 117 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 GLU A 158 CG CD OE1 OE2 REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 GLN A 163 CG CD OE1 NE2 REMARK 470 LYS A 174 CG CD CE NZ REMARK 470 ARG A 175 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 HIS A 189 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 199 CG CD OE1 OE2 REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 34 -178.56 -65.02 REMARK 500 PHE A 66 26.68 -76.59 REMARK 500 ASP A 99 60.91 -114.11 REMARK 500 GLN A 143 116.60 -164.88 REMARK 500 GLU A 158 -19.64 -46.39 REMARK 500 ASP A 160 -150.19 51.37 REMARK 500 LYS A 161 4.47 81.87 REMARK 500 ASN A 170 44.67 36.94 REMARK 500 LYS A 174 148.51 -37.76 REMARK 500 ARG A 175 1.24 89.07 REMARK 500 ILE A 186 125.91 -172.81 REMARK 500 GLU A 199 -92.20 -84.55 REMARK 500 VAL A 214 -70.87 -57.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 67 SER A 68 -143.86 REMARK 500 HIS A 132 CYS A 133 -149.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5H54 RELATED DB: PDB REMARK 900 RELATED ID: 5H5A RELATED DB: PDB REMARK 900 RELATED ID: 5H5C RELATED DB: PDB DBREF 5H55 A 1 305 UNP Q6CUC3 MDM12_KLULA 1 305 SEQADV 5H55 MET A -19 UNP Q6CUC3 INITIATING METHIONINE SEQADV 5H55 GLY A -18 UNP Q6CUC3 EXPRESSION TAG SEQADV 5H55 SER A -17 UNP Q6CUC3 EXPRESSION TAG SEQADV 5H55 SER A -16 UNP Q6CUC3 EXPRESSION TAG SEQADV 5H55 HIS A -15 UNP Q6CUC3 EXPRESSION TAG SEQADV 5H55 HIS A -14 UNP Q6CUC3 EXPRESSION TAG SEQADV 5H55 HIS A -13 UNP Q6CUC3 EXPRESSION TAG SEQADV 5H55 HIS A -12 UNP Q6CUC3 EXPRESSION TAG SEQADV 5H55 HIS A -11 UNP Q6CUC3 EXPRESSION TAG SEQADV 5H55 HIS A -10 UNP Q6CUC3 EXPRESSION TAG SEQADV 5H55 SER A -9 UNP Q6CUC3 EXPRESSION TAG SEQADV 5H55 SER A -8 UNP Q6CUC3 EXPRESSION TAG SEQADV 5H55 GLY A -7 UNP Q6CUC3 EXPRESSION TAG SEQADV 5H55 LEU A -6 UNP Q6CUC3 EXPRESSION TAG SEQADV 5H55 VAL A -5 UNP Q6CUC3 EXPRESSION TAG SEQADV 5H55 PRO A -4 UNP Q6CUC3 EXPRESSION TAG SEQADV 5H55 ARG A -3 UNP Q6CUC3 EXPRESSION TAG SEQADV 5H55 GLY A -2 UNP Q6CUC3 EXPRESSION TAG SEQADV 5H55 SER A -1 UNP Q6CUC3 EXPRESSION TAG SEQADV 5H55 HIS A 0 UNP Q6CUC3 EXPRESSION TAG SEQRES 1 A 325 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 325 LEU VAL PRO ARG GLY SER HIS MET SER VAL GLU ILE ASP SEQRES 3 A 325 TRP ASP ASN ILE ARG GLY ASP LEU SER VAL ASN GLN GLY SEQRES 4 A 325 VAL LYS ASP PHE LEU ASN SER ARG LEU GLN GLU PHE GLU SEQRES 5 A 325 LEU PRO SER TYR VAL ASN ASN LEU LYS VAL THR ASN PHE SEQRES 6 A 325 ASP LEU GLY THR MET PRO PRO ASN VAL ILE LEU LYS GLN SEQRES 7 A 325 MET ASP ASP PRO LEU ASP GLU PHE TYR SER TYR LEU LEU SEQRES 8 A 325 GLN GLU GLY ASP ILE SER LYS GLU ALA ALA LYS ASP LYS SEQRES 9 A 325 ASN THR ASP VAL GLN LEU LEU VAL GLU LEU ASP TYR LYS SEQRES 10 A 325 GLY ASP MET SER ILE GLU LEU SER ALA ASP LEU VAL LEU SEQRES 11 A 325 ASN TYR PRO SER PRO GLN PHE MET ILE LEU PRO VAL LYS SEQRES 12 A 325 LEU ARG ILE SER ASP ILE GLY MET HIS CYS LEU CYS LEU SEQRES 13 A 325 LEU ALA TYR LEU LYS LYS GLN LEU PHE ILE SER PHE LEU SEQRES 14 A 325 CYS ASP VAL SER ASP PRO LEU LEU GLU ASN ASP LYS LEU SEQRES 15 A 325 GLN VAL ASP PRO SER GLY PRO ASN PHE MET GLY LYS ARG SEQRES 16 A 325 ALA LEU GLU ARG ILE SER LEU ILE ARG ASN ILE LYS ILE SEQRES 17 A 325 HIS THR GLU LEU GLY GLN LEU ASP GLN GLY GLU GLY SER SEQRES 18 A 325 VAL LEU ARG SER VAL GLY LYS LEU GLU GLU PHE LEU VAL SEQRES 19 A 325 ASP LEU PHE ARG ASN LEU ILE ARG LYS GLU ALA ALA TRP SEQRES 20 A 325 PRO SER TRP ILE ASP LEU ASP PHE THR PRO GLU ASP PRO SEQRES 21 A 325 GLU ASP PRO GLU GLU GLU GLY ARG GLU ASN ASP LEU VAL SEQRES 22 A 325 ALA ASP SER SER ASN ASP GLY LYS ASP ILE GLU MET LYS SEQRES 23 A 325 SER GLY THR GLU GLU THR LEU GLY ALA GLY ILE GLN GLU SEQRES 24 A 325 SER VAL GLN HIS VAL SER PRO ALA VAL THR SER ILE ASP SEQRES 25 A 325 GLN GLU SER ARG VAL ASN SER ASN THR SER LEU GLU GLU HELIX 1 AA1 ASP A 6 ASP A 13 1 8 HELIX 2 AA2 ASP A 13 GLN A 29 1 17 HELIX 3 AA3 LEU A 63 TYR A 67 5 5 HELIX 4 AA4 ASP A 154 ASN A 159 1 6 HELIX 5 AA5 SER A 205 ALA A 225 1 21 SHEET 1 AA1 5 SER A 2 VAL A 3 0 SHEET 2 AA1 5 ASN A 53 ASP A 60 -1 O VAL A 54 N VAL A 3 SHEET 3 AA1 5 VAL A 88 TYR A 96 -1 O ASP A 95 N ASN A 53 SHEET 4 AA1 5 LEU A 120 TYR A 139 -1 O CYS A 133 N LEU A 94 SHEET 5 AA1 5 ASN A 185 GLU A 191 -1 O LYS A 187 N SER A 127 SHEET 1 AA2 5 VAL A 37 ASP A 46 0 SHEET 2 AA2 5 SER A 101 LEU A 108 -1 O GLU A 103 N ASN A 44 SHEET 3 AA2 5 LEU A 120 TYR A 139 -1 O VAL A 122 N ALA A 106 SHEET 4 AA2 5 LEU A 144 ASP A 151 -1 O CYS A 150 N LEU A 134 SHEET 5 AA2 5 ILE A 231 ASP A 232 -1 O ILE A 231 N ILE A 146 CISPEP 1 ASN A 85 THR A 86 0 1.17 CISPEP 2 SER A 167 GLY A 168 0 14.89 CISPEP 3 TRP A 227 PRO A 228 0 9.85 CRYST1 137.533 137.533 76.602 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007271 0.004198 0.000000 0.00000 SCALE2 0.000000 0.008396 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013054 0.00000