HEADER TRANSFERASE 10-NOV-16 5H60 TITLE STRUCTURE OF TRANSFERASE MUTANT-C23S,C199S COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.B.PARK,Y.YOO,J.KIM REVDAT 4 31-OCT-18 5H60 1 JRNL REVDAT 3 24-OCT-18 5H60 1 JRNL REVDAT 2 19-SEP-18 5H60 1 JRNL REVDAT 1 20-DEC-17 5H60 0 JRNL AUTH J.B.PARK,Y.H.KIM,Y.YOO,J.KIM,S.H.JUN,J.W.CHO,S.EL QAIDI, JRNL AUTH 2 S.WALPOLE,S.MONACO,A.A.GARCIA-GARCIA,M.WU,M.P.HAYS, JRNL AUTH 3 R.HURTADO-GUERRERO,J.ANGULO,P.R.HARDWIDGE,J.S.SHIN,H.S.CHO JRNL TITL STRUCTURAL BASIS FOR ARGININE GLYCOSYLATION OF HOST JRNL TITL 2 SUBSTRATES BY BACTERIAL EFFECTOR PROTEINS. JRNL REF NAT COMMUN V. 9 4283 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30327479 JRNL DOI 10.1038/S41467-018-06680-6 REMARK 2 REMARK 2 RESOLUTION. 3.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 4558 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.255 REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 244 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.64 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.73 REMARK 3 REFLECTION IN BIN (WORKING SET) : 344 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 14 REMARK 3 BIN FREE R VALUE : 0.2170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2472 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 96.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.781 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.649 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 45.995 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.901 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.886 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2554 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2359 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3447 ; 1.320 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5449 ; 1.110 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 303 ; 7.576 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;38.476 ;25.075 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 453 ;21.185 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;20.898 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 359 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2896 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 601 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1215 ; 6.000 ; 9.494 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1214 ; 6.001 ; 9.485 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1517 ; 9.913 ;14.222 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1518 ; 9.910 ;14.234 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1337 ; 5.060 ; 9.913 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1336 ; 5.060 ; 9.913 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1930 ; 8.648 ;14.711 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 10511 ;15.655 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 10512 ;15.654 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5H60 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1300002098. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4558 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.600 REMARK 200 RESOLUTION RANGE LOW (A) : 70.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PROPANE-HCL (PH 7.0), REMARK 280 1.0M AMMONIUM CITRATE TRIBASIC, EVAPORATION, RECRYSTALLIZATION, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.72000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.36000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.72000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.36000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.72000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 33.36000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 66.72000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.36000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 PRO A 3 REMARK 465 PRO A 4 REMARK 465 LEU A 5 REMARK 465 ASN A 6 REMARK 465 ARG A 7 REMARK 465 TYR A 8 REMARK 465 VAL A 9 REMARK 465 PRO A 10 REMARK 465 ALA A 11 REMARK 465 LEU A 12 REMARK 465 SER A 13 REMARK 465 LYS A 14 REMARK 465 ASN A 15 REMARK 465 GLU A 16 REMARK 465 LEU A 17 REMARK 465 VAL A 18 REMARK 465 LYS A 19 REMARK 465 THR A 20 REMARK 465 VAL A 21 REMARK 465 THR A 22 REMARK 465 ASN A 23 REMARK 465 ARG A 24 REMARK 465 ASP A 25 REMARK 465 ILE A 26 REMARK 465 GLN A 27 REMARK 465 PHE A 28 REMARK 465 THR A 29 REMARK 465 HIS A 334 REMARK 465 VAL A 335 REMARK 465 GLN A 336 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD GLN A 328 O ARG A 333 1.61 REMARK 500 OE1 GLN A 328 O ARG A 333 1.84 REMARK 500 O GLN A 50 O2' UDP A 401 2.13 REMARK 500 OG SER A 329 O2B UDP A 401 2.18 REMARK 500 OG SER A 330 O2A UDP A 401 2.18 REMARK 500 OE2 GLU A 255 OH TYR A 285 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 SG CYS A 154 SG CYS A 154 12555 1.34 REMARK 500 OD1 ASN A 216 OD2 ASP A 262 11555 1.65 REMARK 500 OD1 ASN A 216 CG ASP A 262 11555 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 327 N - CA - C ANGL. DEV. = 28.2 DEGREES REMARK 500 GLN A 328 C - N - CA ANGL. DEV. = 15.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 42 162.85 -47.64 REMARK 500 LYS A 44 14.23 -66.70 REMARK 500 PRO A 65 24.79 -78.61 REMARK 500 ALA A 198 -125.44 52.87 REMARK 500 CYS A 210 77.27 -119.83 REMARK 500 THR A 327 -60.72 -98.29 REMARK 500 GLN A 328 134.03 -171.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 262 ARG A 263 -143.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR A 327 12.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 225 OD2 REMARK 620 2 ASN A 322 OD1 95.1 REMARK 620 3 SER A 324 OG 85.8 141.8 REMARK 620 4 UDP A 401 O1A 77.0 119.8 97.7 REMARK 620 5 UDP A 401 O3B 151.7 94.7 102.4 75.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5H5Y RELATED DB: PDB REMARK 900 RELATED ID: 5H61 RELATED DB: PDB REMARK 900 RELATED ID: 5H62 RELATED DB: PDB REMARK 900 RELATED ID: 5H63 RELATED DB: PDB DBREF 5H60 A 1 336 PDB 5H60 5H60 1 336 SEQRES 1 A 336 MET ILE PRO PRO LEU ASN ARG TYR VAL PRO ALA LEU SER SEQRES 2 A 336 LYS ASN GLU LEU VAL LYS THR VAL THR ASN ARG ASP ILE SEQRES 3 A 336 GLN PHE THR SER PHE ASN GLY LYS ASP TYR PRO LEU CYS SEQRES 4 A 336 PHE LEU ASP GLU LYS THR PRO LEU LEU PHE GLN TRP PHE SEQRES 5 A 336 GLU ARG ASN PRO ALA ARG PHE GLY LYS ASN ASP ILE PRO SEQRES 6 A 336 ILE ILE ASN THR GLU LYS ASN PRO TYR LEU ASN ASN ILE SEQRES 7 A 336 ILE LYS ALA ALA THR ILE GLU LYS GLU ARG LEU ILE GLY SEQRES 8 A 336 ILE PHE VAL ASP GLY ASP PHE PHE PRO GLY GLN LYS ASP SEQRES 9 A 336 ALA PHE SER LYS LEU GLU TYR ASP TYR GLU ASN ILE LYS SEQRES 10 A 336 VAL ILE TYR ARG ASN ASP ILE ASP PHE SER MET TYR ASP SEQRES 11 A 336 LYS LYS LEU SER GLU ILE TYR MET GLU ASN ILE SER LYS SEQRES 12 A 336 GLN GLU SER MET PRO GLU GLU LYS ARG ASP CYS HIS LEU SEQRES 13 A 336 LEU GLN LEU LEU LYS LYS GLU LEU SER ASP ILE GLN GLU SEQRES 14 A 336 GLY ASN ASP SER LEU ILE LYS SER TYR LEU LEU ASP LYS SEQRES 15 A 336 GLY HIS GLY TRP PHE ASP PHE TYR ARG ASN MET ALA MET SEQRES 16 A 336 LEU LYS ALA GLY GLN LEU PHE LEU GLU ALA ASP LYS VAL SEQRES 17 A 336 GLY CYS TYR ASP LEU SER THR ASN SER GLY CYS ILE TYR SEQRES 18 A 336 LEU ASP ALA ASP MET ILE ILE THR GLU LYS LEU GLY GLY SEQRES 19 A 336 ILE TYR ILE PRO ASP GLY ILE ALA VAL HIS VAL GLU ARG SEQRES 20 A 336 ILE ASP GLY ARG ALA SER MET GLU ASN GLY ILE ILE ALA SEQRES 21 A 336 VAL ASP ARG ASN ASN HIS PRO ALA LEU LEU ALA GLY LEU SEQRES 22 A 336 GLU ILE MET HIS THR LYS PHE ASP ALA ASP PRO TYR SER SEQRES 23 A 336 ASP GLY VAL CYS ASN GLY ILE ARG LYS HIS PHE ASN TYR SEQRES 24 A 336 SER LEU ASN GLU ASP TYR ASN SER PHE CYS ASP PHE ILE SEQRES 25 A 336 GLU PHE LYS HIS ASP ASN ILE ILE MET ASN THR SER GLN SEQRES 26 A 336 PHE THR GLN SER SER TRP ALA ARG HIS VAL GLN HET UDP A 401 25 HET MN A 402 1 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM MN MANGANESE (II) ION FORMUL 2 UDP C9 H14 N2 O12 P2 FORMUL 3 MN MN 2+ HELIX 1 AA1 ASN A 55 PHE A 59 5 5 HELIX 2 AA2 PRO A 73 GLU A 85 1 13 HELIX 3 AA3 PHE A 99 TYR A 113 1 15 HELIX 4 AA4 ASN A 122 ILE A 124 5 3 HELIX 5 AA5 PHE A 126 ASP A 130 5 5 HELIX 6 AA6 LYS A 132 MET A 147 1 16 HELIX 7 AA7 ASP A 153 GLN A 168 1 16 HELIX 8 AA8 GLY A 183 ALA A 198 1 16 HELIX 9 AA9 ALA A 198 ASP A 206 1 9 HELIX 10 AB1 HIS A 266 LYS A 279 1 14 HELIX 11 AB2 VAL A 289 ASN A 298 1 10 HELIX 12 AB3 ASP A 304 GLU A 313 1 10 HELIX 13 AB4 THR A 323 GLN A 328 1 6 SHEET 1 AA1 2 CYS A 39 PHE A 40 0 SHEET 2 AA1 2 TYR A 236 ILE A 237 -1 O ILE A 237 N CYS A 39 SHEET 1 AA2 6 ILE A 116 TYR A 120 0 SHEET 2 AA2 6 ILE A 90 ASP A 95 1 N ILE A 92 O ILE A 119 SHEET 3 AA2 6 LEU A 47 PHE A 52 1 N LEU A 47 O GLY A 91 SHEET 4 AA2 6 CYS A 219 LEU A 222 1 O ILE A 220 N LEU A 48 SHEET 5 AA2 6 ALA A 252 VAL A 261 -1 O ILE A 259 N TYR A 221 SHEET 6 AA2 6 ILE A 241 ARG A 247 -1 N HIS A 244 O GLU A 255 SHEET 1 AA3 2 ILE A 227 ILE A 228 0 SHEET 2 AA3 2 ILE A 319 ILE A 320 -1 O ILE A 320 N ILE A 227 LINK OD2 ASP A 225 MN MN A 402 1555 1555 1.80 LINK OD1 ASN A 322 MN MN A 402 1555 1555 2.44 LINK OG SER A 324 MN MN A 402 1555 1555 2.28 LINK NE2 GLN A 328 C ARG A 333 1555 1555 1.48 LINK NE2 GLN A 328 O ARG A 333 1555 1555 1.37 LINK O1A UDP A 401 MN MN A 402 1555 1555 2.00 LINK O3B UDP A 401 MN MN A 402 1555 1555 2.55 CISPEP 1 ASN A 32 GLY A 33 0 0.41 CISPEP 2 ILE A 248 ASP A 249 0 3.22 CISPEP 3 SER A 300 LEU A 301 0 -13.56 CISPEP 4 ASN A 302 GLU A 303 0 -14.38 CISPEP 5 MET A 321 ASN A 322 0 -17.64 SITE 1 AC1 14 GLN A 50 TRP A 51 PHE A 52 TYR A 74 SITE 2 AC1 14 TYR A 221 ASP A 223 ALA A 224 ASP A 225 SITE 3 AC1 14 ASN A 322 SER A 324 SER A 329 SER A 330 SITE 4 AC1 14 TRP A 331 MN A 402 SITE 1 AC2 4 ASP A 225 ASN A 322 SER A 324 UDP A 401 CRYST1 115.940 115.940 100.080 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008625 0.004980 0.000000 0.00000 SCALE2 0.000000 0.009959 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009992 0.00000