HEADER VIRAL PROTEIN/INHIBITOR 15-NOV-16 5H6V TITLE STRUCTURE OF ZIKA VIRUS PROTEASE IN COMPLEX WITH A DIPEPTIDE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1411-1462; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: GENOME POLYPROTEIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 1497-1673; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 3 ORGANISM_COMMON: ZIKV; SOURCE 4 ORGANISM_TAXID: 64320; SOURCE 5 STRAIN: MR 766; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ZIKA VIRUS (STRAIN MR 766); SOURCE 10 ORGANISM_COMMON: ZIKV; SOURCE 11 ORGANISM_TAXID: 64320; SOURCE 12 STRAIN: MR 766; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SERINE PROTEASE, NON-STRUCTURAL PROTEIN 3, VIRAL PROTEIN-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHANG,M.CHEN REVDAT 3 08-NOV-23 5H6V 1 REMARK REVDAT 2 04-JUL-18 5H6V 1 JRNL REVDAT 1 14-JUN-17 5H6V 0 JRNL AUTH Y.LI,Z.ZHANG,W.W.PHOO,Y.R.LOH,W.WANG,S.LIU,M.W.CHEN, JRNL AUTH 2 A.W.HUNG,T.H.KELLER,D.LUO,C.KANG JRNL TITL STRUCTURAL DYNAMICS OF ZIKA VIRUS NS2B-NS3 PROTEASE BINDING JRNL TITL 2 TO DIPEPTIDE INHIBITORS JRNL REF STRUCTURE V. 25 1242 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 28689970 JRNL DOI 10.1016/J.STR.2017.06.006 REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 8137 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.410 REMARK 3 FREE R VALUE TEST SET COUNT : 440 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.3359 - 3.4922 0.99 2690 158 0.1701 0.2133 REMARK 3 2 3.4922 - 2.7720 1.00 2523 150 0.2088 0.2732 REMARK 3 3 2.7720 - 2.4216 1.00 2484 132 0.2544 0.3469 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1481 REMARK 3 ANGLE : 0.948 2011 REMARK 3 CHIRALITY : 0.055 225 REMARK 3 PLANARITY : 0.007 262 REMARK 3 DIHEDRAL : 19.466 870 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.2929 14.6791 -12.9562 REMARK 3 T TENSOR REMARK 3 T11: 0.7350 T22: 0.5376 REMARK 3 T33: 0.4347 T12: 0.2575 REMARK 3 T13: 0.1402 T23: 0.0410 REMARK 3 L TENSOR REMARK 3 L11: 0.0031 L22: 0.0111 REMARK 3 L33: 0.0036 L12: 0.0107 REMARK 3 L13: 0.0007 L23: 0.0038 REMARK 3 S TENSOR REMARK 3 S11: 0.1426 S12: 0.1192 S13: 0.1723 REMARK 3 S21: -0.0118 S22: 0.0798 S23: 0.0572 REMARK 3 S31: -0.1127 S32: -0.0434 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.1751 4.2934 -23.8076 REMARK 3 T TENSOR REMARK 3 T11: 0.5614 T22: 0.3368 REMARK 3 T33: 0.7048 T12: 0.1249 REMARK 3 T13: -0.1440 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 0.0047 L22: 0.0519 REMARK 3 L33: 0.0049 L12: 0.0104 REMARK 3 L13: -0.0066 L23: -0.0007 REMARK 3 S TENSOR REMARK 3 S11: -0.0892 S12: -0.0351 S13: 0.1280 REMARK 3 S21: -0.0087 S22: -0.0274 S23: 0.1225 REMARK 3 S31: -0.0275 S32: -0.0140 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.5739 -4.2974 -32.8481 REMARK 3 T TENSOR REMARK 3 T11: 0.9719 T22: 0.6935 REMARK 3 T33: 0.0662 T12: 0.4730 REMARK 3 T13: -0.1037 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 0.1660 L22: 0.0709 REMARK 3 L33: 0.0704 L12: 0.0986 REMARK 3 L13: -0.0014 L23: -0.0245 REMARK 3 S TENSOR REMARK 3 S11: -0.1466 S12: 0.0423 S13: 0.0402 REMARK 3 S21: -0.2520 S22: -0.0169 S23: -0.0587 REMARK 3 S31: -0.1924 S32: 0.1033 S33: -0.0743 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5617 -11.1837 -22.7287 REMARK 3 T TENSOR REMARK 3 T11: 0.3066 T22: 0.5789 REMARK 3 T33: 0.9336 T12: 0.2305 REMARK 3 T13: 0.0001 T23: -0.1103 REMARK 3 L TENSOR REMARK 3 L11: 0.0865 L22: 0.0497 REMARK 3 L33: 0.0153 L12: 0.0053 REMARK 3 L13: -0.0284 L23: -0.0168 REMARK 3 S TENSOR REMARK 3 S11: -0.0335 S12: 0.0276 S13: 0.0279 REMARK 3 S21: 0.0083 S22: 0.0317 S23: 0.0913 REMARK 3 S31: -0.0026 S32: -0.0144 S33: -0.0009 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6123 -5.4546 -7.5229 REMARK 3 T TENSOR REMARK 3 T11: 0.2654 T22: 0.5891 REMARK 3 T33: 0.4754 T12: 0.1383 REMARK 3 T13: -0.0124 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 0.0090 L22: 0.0317 REMARK 3 L33: 0.0285 L12: 0.0091 REMARK 3 L13: -0.0158 L23: -0.0209 REMARK 3 S TENSOR REMARK 3 S11: 0.1732 S12: -0.0231 S13: 0.1422 REMARK 3 S21: 0.0042 S22: 0.1253 S23: -0.2854 REMARK 3 S31: 0.0341 S32: -0.0600 S33: 0.0086 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.2906 10.8971 -16.4732 REMARK 3 T TENSOR REMARK 3 T11: 0.5116 T22: 0.3613 REMARK 3 T33: 0.4175 T12: 0.1580 REMARK 3 T13: 0.0227 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 0.0573 L22: 0.0110 REMARK 3 L33: 0.1081 L12: -0.0137 REMARK 3 L13: 0.0846 L23: -0.0468 REMARK 3 S TENSOR REMARK 3 S11: 0.0086 S12: 0.0478 S13: 0.2794 REMARK 3 S21: -0.3136 S22: -0.0494 S23: -0.3497 REMARK 3 S31: 0.0520 S32: -0.0944 S33: -0.0037 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.9121 4.3092 -7.0225 REMARK 3 T TENSOR REMARK 3 T11: 0.3820 T22: 0.2161 REMARK 3 T33: 0.4125 T12: 0.1699 REMARK 3 T13: 0.1296 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.0718 L22: 0.2190 REMARK 3 L33: 0.0336 L12: 0.1042 REMARK 3 L13: 0.0254 L23: 0.0164 REMARK 3 S TENSOR REMARK 3 S11: 0.5470 S12: -0.2785 S13: 0.1034 REMARK 3 S21: 0.3722 S22: -0.2233 S23: 0.2019 REMARK 3 S31: -0.2118 S32: -0.1211 S33: 0.1359 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 80 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.9499 -9.6984 -16.4364 REMARK 3 T TENSOR REMARK 3 T11: 0.4475 T22: 0.3073 REMARK 3 T33: 0.2840 T12: 0.2019 REMARK 3 T13: -0.0676 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.5321 L22: 0.4892 REMARK 3 L33: 0.1373 L12: 0.3677 REMARK 3 L13: 0.0149 L23: 0.1797 REMARK 3 S TENSOR REMARK 3 S11: 0.3643 S12: -0.0581 S13: -0.0091 REMARK 3 S21: -0.0273 S22: -0.3321 S23: -0.0462 REMARK 3 S31: 0.2491 S32: 0.2105 S33: 0.0232 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7530 -3.3396 -20.1417 REMARK 3 T TENSOR REMARK 3 T11: 0.5084 T22: 0.5348 REMARK 3 T33: 0.3359 T12: 0.3271 REMARK 3 T13: 0.0831 T23: 0.0239 REMARK 3 L TENSOR REMARK 3 L11: 0.2663 L22: 0.3900 REMARK 3 L33: 0.1288 L12: 0.2038 REMARK 3 L13: -0.0851 L23: 0.1506 REMARK 3 S TENSOR REMARK 3 S11: 0.4619 S12: 0.3188 S13: -0.0796 REMARK 3 S21: -0.4551 S22: -0.4136 S23: -0.0024 REMARK 3 S31: -0.0529 S32: 0.1811 S33: 0.1966 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5H6V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1300002127. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0-5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0004 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8233 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.420 REMARK 200 RESOLUTION RANGE LOW (A) : 42.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : 0.78000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5GPI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 ACETATE TRIHYDRATE PH4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.37900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 161.06850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.68950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 107.37900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.68950 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 161.06850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 307 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 44 REMARK 465 THR A 45 REMARK 465 GLY A 46 REMARK 465 LYS A 47 REMARK 465 SER A 48 REMARK 465 VAL A 49 REMARK 465 GLU A 88 REMARK 465 GLU A 89 REMARK 465 GLY A 90 REMARK 465 PRO A 91 REMARK 465 PRO A 92 REMARK 465 MET A 93 REMARK 465 ARG A 94 REMARK 465 GLU A 95 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 LEU B 4 REMARK 465 TRP B 5 REMARK 465 ASP B 6 REMARK 465 VAL B 7 REMARK 465 PRO B 8 REMARK 465 ALA B 9 REMARK 465 PRO B 10 REMARK 465 LYS B 11 REMARK 465 GLU B 12 REMARK 465 VAL B 13 REMARK 465 LYS B 14 REMARK 465 LYS B 15 REMARK 465 GLY B 16 REMARK 465 GLU B 172 REMARK 465 GLU B 173 REMARK 465 THR B 174 REMARK 465 PRO B 175 REMARK 465 VAL B 176 REMARK 465 GLU B 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 64 CG OD1 OD2 REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 LYS B 117 CG CD CE NZ REMARK 470 LYS B 119 CG CD CE NZ REMARK 470 LYS B 142 CG CD CE NZ REMARK 470 LYS B 157 CG CD CE NZ REMARK 470 LYS B 169 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 90 OG SER B 93 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 64 59.48 -113.59 REMARK 500 LEU B 30 -167.81 -100.29 REMARK 500 LYS B 54 7.00 58.96 REMARK 500 CYS B 80 -0.68 74.76 REMARK 500 ASN B 158 -72.30 -83.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7HS B 201 DBREF 5H6V A 45 95 UNP H8XX12 H8XX12_ZIKV 1411 1462 DBREF 5H6V B 1 177 UNP H8XX12 H8XX12_ZIKV 1497 1673 SEQADV 5H6V MET A 44 UNP H8XX12 INITIATING METHIONINE SEQADV 5H6V A UNP H8XX12 ASP 1456 DELETION SEQADV 5H6V GLY B 0 UNP H8XX12 EXPRESSION TAG SEQADV 5H6V LYS B 29 UNP H8XX12 ARG 1525 ENGINEERED MUTATION SEQRES 1 A 52 MET THR GLY LYS SER VAL ASP MET TYR ILE GLU ARG ALA SEQRES 2 A 52 GLY ASP ILE THR TRP GLU LYS ASP ALA GLU VAL THR GLY SEQRES 3 A 52 ASN SER PRO ARG LEU ASP VAL ALA LEU ASP GLU SER GLY SEQRES 4 A 52 ASP PHE SER LEU VAL GLU GLU GLY PRO PRO MET ARG GLU SEQRES 1 B 178 GLY SER GLY ALA LEU TRP ASP VAL PRO ALA PRO LYS GLU SEQRES 2 B 178 VAL LYS LYS GLY GLU THR THR ASP GLY VAL TYR ARG VAL SEQRES 3 B 178 MET THR ARG LYS LEU LEU GLY SER THR GLN VAL GLY VAL SEQRES 4 B 178 GLY VAL MET GLN GLU GLY VAL PHE HIS THR MET TRP HIS SEQRES 5 B 178 VAL THR LYS GLY ALA ALA LEU ARG SER GLY GLU GLY ARG SEQRES 6 B 178 LEU ASP PRO TYR TRP GLY ASP VAL LYS GLN ASP LEU VAL SEQRES 7 B 178 SER TYR CYS GLY PRO TRP LYS LEU ASP ALA ALA TRP ASP SEQRES 8 B 178 GLY LEU SER GLU VAL GLN LEU LEU ALA VAL PRO PRO GLY SEQRES 9 B 178 GLU ARG ALA LYS ASN ILE GLN THR LEU PRO GLY ILE PHE SEQRES 10 B 178 LYS THR LYS ASP GLY ASP ILE GLY ALA VAL ALA LEU ASP SEQRES 11 B 178 TYR PRO ALA GLY THR SER GLY SER PRO ILE LEU ASP LYS SEQRES 12 B 178 CYS GLY ARG VAL ILE GLY LEU TYR GLY ASN GLY VAL VAL SEQRES 13 B 178 ILE LYS ASN GLY SER TYR VAL SER ALA ILE THR GLN GLY SEQRES 14 B 178 LYS ARG GLU GLU GLU THR PRO VAL GLU HET 7HS B 201 23 HETNAM 7HS (S)-2-ACETAMIDO-6-AMINO-N-((S)-5-GUANIDINO-1-OXOPENTAN- HETNAM 2 7HS 2-YL)HEXANAMIDE FORMUL 3 7HS C14 H28 N6 O3 FORMUL 4 HOH *21(H2 O) HELIX 1 AA1 TRP B 50 LYS B 54 1 5 SHEET 1 AA1 8 GLY B 63 LEU B 65 0 SHEET 2 AA1 8 LEU B 58 SER B 60 -1 N LEU B 58 O LEU B 65 SHEET 3 AA1 8 MET A 51 GLY A 57 1 N ILE A 53 O ARG B 59 SHEET 4 AA1 8 GLY B 21 THR B 27 -1 O VAL B 22 N ALA A 56 SHEET 5 AA1 8 THR B 34 GLN B 42 -1 O VAL B 36 N VAL B 25 SHEET 6 AA1 8 VAL B 45 MET B 49 -1 O HIS B 47 N VAL B 40 SHEET 7 AA1 8 LEU B 76 TYR B 79 -1 O VAL B 77 N THR B 48 SHEET 8 AA1 8 PRO B 67 ASP B 71 -1 N TYR B 68 O SER B 78 SHEET 1 AA2 5 GLU A 66 VAL A 67 0 SHEET 2 AA2 5 LYS B 107 THR B 111 1 O GLN B 110 N GLU A 66 SHEET 3 AA2 5 VAL B 95 ALA B 99 -1 N VAL B 95 O THR B 111 SHEET 4 AA2 5 PRO B 138 LEU B 140 -1 O LEU B 140 N GLN B 96 SHEET 5 AA2 5 VAL B 146 LEU B 149 -1 O GLY B 148 N ILE B 139 SHEET 1 AA3 6 PHE A 84 LEU A 86 0 SHEET 2 AA3 6 ARG A 73 LEU A 78 -1 N ALA A 77 O SER A 85 SHEET 3 AA3 6 GLY B 114 THR B 118 1 O LYS B 117 N LEU A 74 SHEET 4 AA3 6 GLY B 121 VAL B 126 -1 O ILE B 123 N PHE B 116 SHEET 5 AA3 6 TYR B 161 ALA B 164 -1 O SER B 163 N VAL B 126 SHEET 6 AA3 6 GLY B 153 VAL B 155 -1 N VAL B 154 O VAL B 162 SSBOND 1 CYS B 143 CYS B 143 1555 8444 2.08 LINK OG SER B 135 CAO 7HS B 201 1555 1555 1.47 SITE 1 AC1 11 GLY A 82 ASP A 83 HIS B 51 ASP B 75 SITE 2 AC1 11 ASP B 129 TYR B 130 SER B 135 GLY B 151 SITE 3 AC1 11 ASN B 152 GLY B 153 TYR B 161 CRYST1 42.330 42.330 214.758 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023624 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023624 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004656 0.00000