HEADER TRANSCRIPTION 15-NOV-16 5H6Z TITLE CRYSTAL STRUCTURE OF SET7, A NOVEL HISTONE METHYLTRANSFERASE IN TITLE 2 SCHIZOSSACHAROMYCES POMBE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SET DOMAIN-CONTAINING PROTEIN 7; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.43; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE (STRAIN 972 / ATCC SOURCE 3 24843); SOURCE 4 ORGANISM_COMMON: FISSION YEAST; SOURCE 5 ORGANISM_TAXID: 284812; SOURCE 6 STRAIN: 972 / ATCC 24843; SOURCE 7 GENE: SET7, SPCC297.04C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PTYB12 KEYWDS HISTONE, METHYTRANSFERASE, SCHIZOSACCHAROMYCES POMBE SET7, KEYWDS 2 EPIGENETIC, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR D.E.H.F.MEVIUS,Y.SHEN,M.MORISHITA,B.CARROZZINI,R.CALIANDRO,E.DI AUTHOR 2 LUCCIO REVDAT 4 08-NOV-23 5H6Z 1 REMARK REVDAT 3 15-MAY-19 5H6Z 1 JRNL REVDAT 2 17-JAN-18 5H6Z 1 AUTHOR JRNL REVDAT 1 22-NOV-17 5H6Z 0 JRNL AUTH Y.SHEN,D.E.H.F.MEVIUS,R.CALIANDRO,B.CARROZZINI,Y.ROH,J.KIM, JRNL AUTH 2 S.KIM,S.C.HA,M.MORISHITA,E.DI LUCCIO JRNL TITL SET7 IS A H3K37 METHYLTRANSFERASE IN SCHIZOSACCHAROMYCES JRNL TITL 2 POMBE AND IS REQUIRED FOR PROPER GAMETOGENESIS. JRNL REF STRUCTURE V. 27 631 2019 JRNL REFN ISSN 0969-2126 JRNL PMID 30773398 JRNL DOI 10.1016/J.STR.2019.01.011 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 3 NUMBER OF REFLECTIONS : 20488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1111 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1108 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2013 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 204 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.160 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.134 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2083 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1916 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2818 ; 1.978 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4413 ; 1.074 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 241 ; 7.516 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;32.354 ;23.670 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 359 ;14.500 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;13.492 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 292 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2330 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 502 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 970 ; 3.135 ; 2.820 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 969 ; 3.136 ; 2.818 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1209 ; 4.808 ; 4.208 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1210 ; 4.806 ; 4.211 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1113 ; 4.237 ; 3.387 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1114 ; 4.236 ; 3.389 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1609 ; 6.722 ; 4.887 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2504 ; 9.334 ;23.941 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2505 ; 9.332 ;23.955 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, SF FILE CONTAINS FRIEDEL PAIRS UNDER I/F_MINUS AND I/ REMARK 3 F_PLUS COLUMNS. REMARK 4 REMARK 4 5H6Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1300001938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : DCM SI (111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 2.3.9 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 2.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21580 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.999 REMARK 200 RESOLUTION RANGE LOW (A) : 57.314 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.80600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SIR2014 16.10 REMARK 200 STARTING MODEL: 3KMA REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 250MM AMMONIUM SULFATE, 14% PEG 3.350, REMARK 280 1(PROTEIN):1(BUFFER):0.4 RATIO OF 0.3M GLYCYL-GLYCYL-GLYCINE (~ REMARK 280 48MM FINAL CONC), PROTEIN CONCENTRATION(4MG/ML), PROTEIN REMARK 280 BUFFER(10MM TRIS PH 7.5) TEMPERATURE(13), WELL VOLUME(500UL), REMARK 280 5UL OF HCL (12.1M) WAS ADDED TO THE RESERVOIR DROP PRIOR TO DROP REMARK 280 SETUP, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 286K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 171.79933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.89967 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 128.84950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.94983 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 214.74917 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 171.79933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 85.89967 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 42.94983 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 128.84950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 214.74917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 344 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 391 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -5 REMARK 465 GLY A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 THR A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 125 REMARK 465 SER A 126 REMARK 465 SER A 127 REMARK 465 ALA A 128 REMARK 465 SER A 129 REMARK 465 ARG A 130 REMARK 465 ILE A 131 REMARK 465 SER A 132 REMARK 465 PRO A 133 REMARK 465 ASN A 134 REMARK 465 GLU A 135 REMARK 465 GLU A 136 REMARK 465 ASN A 137 REMARK 465 GLU A 138 REMARK 465 ASP A 139 REMARK 465 PHE A 140 REMARK 465 PRO A 141 REMARK 465 LEU A 142 REMARK 465 GLN A 143 REMARK 465 ASN A 144 REMARK 465 ILE A 145 REMARK 465 SER A 146 REMARK 465 LEU A 147 REMARK 465 LEU A 148 REMARK 465 GLU A 149 REMARK 465 THR A 150 REMARK 465 MET A 151 REMARK 465 TYR A 152 REMARK 465 PRO A 153 REMARK 465 TYR A 154 REMARK 465 ASP A 155 REMARK 465 VAL A 156 REMARK 465 PRO A 157 REMARK 465 ASP A 158 REMARK 465 TYR A 159 REMARK 465 ALA A 160 REMARK 465 ALA A 161 REMARK 465 PRO A 162 REMARK 465 GLY A 163 REMARK 465 TYR B 115 REMARK 465 GLY B 116 REMARK 465 ASP B 117 REMARK 465 HIS B 118 REMARK 465 LEU B 119 REMARK 465 TRP B 120 REMARK 465 PHE B 121 REMARK 465 GLU B 122 REMARK 465 ASP B 123 REMARK 465 GLU B 124 REMARK 465 ALA B 125 REMARK 465 SER B 126 REMARK 465 SER B 127 REMARK 465 ALA B 128 REMARK 465 SER B 129 REMARK 465 ARG B 130 REMARK 465 ILE B 131 REMARK 465 SER B 132 REMARK 465 PRO B 133 REMARK 465 ASN B 134 REMARK 465 GLU B 135 REMARK 465 GLU B 136 REMARK 465 ASN B 137 REMARK 465 GLU B 138 REMARK 465 ASP B 139 REMARK 465 PHE B 140 REMARK 465 PRO B 141 REMARK 465 LEU B 142 REMARK 465 GLN B 143 REMARK 465 ASN B 144 REMARK 465 ILE B 145 REMARK 465 SER B 146 REMARK 465 LEU B 147 REMARK 465 LEU B 148 REMARK 465 GLU B 149 REMARK 465 THR B 150 REMARK 465 MET B 151 REMARK 465 TYR B 152 REMARK 465 PRO B 153 REMARK 465 TYR B 154 REMARK 465 ASP B 155 REMARK 465 VAL B 156 REMARK 465 PRO B 157 REMARK 465 ASP B 158 REMARK 465 TYR B 159 REMARK 465 ALA B 160 REMARK 465 ALA B 161 REMARK 465 PRO B 162 REMARK 465 GLY B 163 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 9 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 7 35.85 82.58 REMARK 500 ARG A 17 -72.67 -63.86 REMARK 500 HIS A 50 -52.10 -137.21 REMARK 500 LEU A 72 -151.59 -84.32 REMARK 500 HIS A 83 71.86 -114.14 REMARK 500 HIS B 50 -50.91 -133.79 REMARK 500 LEU B 72 -153.76 -79.91 REMARK 500 HIS B 83 67.76 -108.20 REMARK 500 ASN B 108 -4.32 75.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 410 DISTANCE = 7.11 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NH4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NH4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NH4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NH4 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NH4 A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NH4 A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NH4 B 202 REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE RESIDUES, A-5-A0, A148-A151, B-5-B0 AND B148- REMARK 999 B151 SHOULD BE LABELED AS 'PTYB12 MULTIPLE CLONING SITE RESIDUE'. REMARK 999 THE RESIDUES, A152-A163 AND B152-A163 SHOULD BE LABELED AS 'HUMAN REMARK 999 INFLUENZA HEMAGGLUTININ DETECTION TAG'. DBREF 5H6Z A 1 147 UNP Q9Y7Q6 SET7_SCHPO 1 147 DBREF 5H6Z B 1 147 UNP Q9Y7Q6 SET7_SCHPO 1 147 SEQADV 5H6Z ALA A -5 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z GLY A -4 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z HIS A -3 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z MET A -2 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z THR A -1 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z SER A 0 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z LEU A 148 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z GLU A 149 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z THR A 150 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z MET A 151 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z TYR A 152 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z PRO A 153 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z TYR A 154 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z ASP A 155 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z VAL A 156 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z PRO A 157 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z ASP A 158 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z TYR A 159 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z ALA A 160 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z ALA A 161 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z PRO A 162 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z GLY A 163 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z ALA B -5 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z GLY B -4 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z HIS B -3 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z MET B -2 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z THR B -1 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z SER B 0 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z LEU B 148 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z GLU B 149 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z THR B 150 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z MET B 151 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z TYR B 152 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z PRO B 153 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z TYR B 154 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z ASP B 155 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z VAL B 156 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z PRO B 157 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z ASP B 158 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z TYR B 159 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z ALA B 160 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z ALA B 161 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z PRO B 162 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQADV 5H6Z GLY B 163 UNP Q9Y7Q6 SEE SEQUENCE DETAILS SEQRES 1 A 169 ALA GLY HIS MET THR SER MET ARG ILE PRO VAL ILE ARG SEQRES 2 A 169 SER PRO LEU GLU ILE ARG ASP THR GLU ARG LYS GLY ARG SEQRES 3 A 169 GLY VAL PHE ALA LEU GLU PRO ILE PRO ALA GLN THR CYS SEQRES 4 A 169 ILE GLU ILE SER PRO VAL LEU MET PHE SER LYS GLU GLU SEQRES 5 A 169 TYR GLU GLN HIS GLY GLN TYR THR VAL LEU ASN GLU TYR SEQRES 6 A 169 THR TYR VAL TRP SER GLU GLY LYS GLN GLY LEU ALA LEU SEQRES 7 A 169 GLY LEU GLY SER MET PHE ASN HIS ASP ARG HIS PRO ASN SEQRES 8 A 169 VAL TYR TRP LYS LYS ASP ASN ARG ASN ASN TYR ILE SER SEQRES 9 A 169 TYR TYR THR LEU ARG GLU ILE LYS THR ASN GLU GLU LEU SEQRES 10 A 169 CYS ILE SER TYR GLY ASP HIS LEU TRP PHE GLU ASP GLU SEQRES 11 A 169 ALA SER SER ALA SER ARG ILE SER PRO ASN GLU GLU ASN SEQRES 12 A 169 GLU ASP PHE PRO LEU GLN ASN ILE SER LEU LEU GLU THR SEQRES 13 A 169 MET TYR PRO TYR ASP VAL PRO ASP TYR ALA ALA PRO GLY SEQRES 1 B 169 ALA GLY HIS MET THR SER MET ARG ILE PRO VAL ILE ARG SEQRES 2 B 169 SER PRO LEU GLU ILE ARG ASP THR GLU ARG LYS GLY ARG SEQRES 3 B 169 GLY VAL PHE ALA LEU GLU PRO ILE PRO ALA GLN THR CYS SEQRES 4 B 169 ILE GLU ILE SER PRO VAL LEU MET PHE SER LYS GLU GLU SEQRES 5 B 169 TYR GLU GLN HIS GLY GLN TYR THR VAL LEU ASN GLU TYR SEQRES 6 B 169 THR TYR VAL TRP SER GLU GLY LYS GLN GLY LEU ALA LEU SEQRES 7 B 169 GLY LEU GLY SER MET PHE ASN HIS ASP ARG HIS PRO ASN SEQRES 8 B 169 VAL TYR TRP LYS LYS ASP ASN ARG ASN ASN TYR ILE SER SEQRES 9 B 169 TYR TYR THR LEU ARG GLU ILE LYS THR ASN GLU GLU LEU SEQRES 10 B 169 CYS ILE SER TYR GLY ASP HIS LEU TRP PHE GLU ASP GLU SEQRES 11 B 169 ALA SER SER ALA SER ARG ILE SER PRO ASN GLU GLU ASN SEQRES 12 B 169 GLU ASP PHE PRO LEU GLN ASN ILE SER LEU LEU GLU THR SEQRES 13 B 169 MET TYR PRO TYR ASP VAL PRO ASP TYR ALA ALA PRO GLY HET SO4 A 201 5 HET SO4 A 202 5 HET NH4 A 203 1 HET NH4 A 204 1 HET NH4 A 205 1 HET NH4 A 206 1 HET NH4 A 207 1 HET NH4 A 208 1 HET PEG A 209 7 HET SO4 B 201 5 HET NH4 B 202 1 HETNAM SO4 SULFATE ION HETNAM NH4 AMMONIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 SO4 3(O4 S 2-) FORMUL 5 NH4 7(H4 N 1+) FORMUL 11 PEG C4 H10 O3 FORMUL 14 HOH *204(H2 O) HELIX 1 AA1 SER A 43 HIS A 50 1 8 HELIX 2 AA2 GLY A 51 TYR A 59 5 9 HELIX 3 AA3 SER A 64 GLY A 66 5 3 HELIX 4 AA4 LEU A 74 PHE A 78 5 5 HELIX 5 AA5 SER B 43 HIS B 50 1 8 HELIX 6 AA6 GLY B 51 TYR B 59 5 9 HELIX 7 AA7 SER B 64 GLY B 66 5 3 HELIX 8 AA8 LEU B 74 PHE B 78 5 5 SHEET 1 AA1 5 ILE A 3 PRO A 4 0 SHEET 2 AA1 5 LEU B 10 THR B 15 -1 O ILE B 12 N ILE A 3 SHEET 3 AA1 5 GLY B 19 ALA B 24 -1 O PHE B 23 N GLU B 11 SHEET 4 AA1 5 GLU B 110 ILE B 113 -1 O LEU B 111 N VAL B 22 SHEET 5 AA1 5 ASN B 79 HIS B 80 1 N ASN B 79 O ILE B 113 SHEET 1 AA2 5 ASN A 79 HIS A 80 0 SHEET 2 AA2 5 GLU A 110 ILE A 113 1 O ILE A 113 N ASN A 79 SHEET 3 AA2 5 GLY A 19 ALA A 24 -1 N VAL A 22 O LEU A 111 SHEET 4 AA2 5 LEU A 10 THR A 15 -1 N ARG A 13 O GLY A 21 SHEET 5 AA2 5 SER B 0 PRO B 4 -1 O ILE B 3 N ILE A 12 SHEET 1 AA3 5 TYR A 61 VAL A 62 0 SHEET 2 AA3 5 GLN A 68 ALA A 71 -1 O GLY A 69 N TYR A 61 SHEET 3 AA3 5 CYS A 33 PHE A 42 -1 N PHE A 42 O GLN A 68 SHEET 4 AA3 5 TYR A 96 THR A 101 -1 O ILE A 97 N SER A 37 SHEET 5 AA3 5 VAL A 86 ASP A 91 -1 N TYR A 87 O TYR A 100 SHEET 1 AA4 5 TYR B 61 VAL B 62 0 SHEET 2 AA4 5 GLN B 68 ALA B 71 -1 O GLY B 69 N TYR B 61 SHEET 3 AA4 5 CYS B 33 PHE B 42 -1 N LEU B 40 O LEU B 70 SHEET 4 AA4 5 TYR B 96 THR B 101 -1 O ILE B 97 N SER B 37 SHEET 5 AA4 5 VAL B 86 ASP B 91 -1 N TYR B 87 O TYR B 100 SITE 1 AC1 8 GLY A 19 ARG A 20 TYR A 59 ARG A 82 SITE 2 AC1 8 HOH A 304 HOH A 323 HOH A 330 HOH A 333 SITE 1 AC2 7 GLU A 48 GLN A 52 TRP A 120 NH4 A 203 SITE 2 AC2 7 HOH A 301 HOH A 315 HOH A 334 SITE 1 AC3 4 TYR A 53 TYR A 87 SO4 A 202 NH4 A 207 SITE 1 AC4 2 ARG A 2 ILE A 3 SITE 1 AC5 6 ASN A 57 SER A 114 GLY A 116 HOH A 345 SITE 2 AC5 6 HOH A 362 HOH A 364 SITE 1 AC6 2 HIS A 50 ASP B 91 SITE 1 AC7 1 NH4 A 203 SITE 1 AC8 4 HIS A 80 HOH A 306 HOH A 319 HOH A 340 SITE 1 AC9 4 GLU A 58 ASN A 79 HIS A 80 TYR A 115 SITE 1 AD1 7 ALA B -5 LYS B 18 GLY B 19 ARG B 20 SITE 2 AD1 7 TYR B 59 HOH B 334 HOH B 348 SITE 1 AD2 1 TRP B 88 CRYST1 66.181 66.181 257.699 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015110 0.008724 0.000000 0.00000 SCALE2 0.000000 0.017448 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003880 0.00000