HEADER TRANSFERASE 15-NOV-16 5H70 TITLE CRYSTAL STRUCTURE OF ADP BOUND DTMP KINASE (ST1543) FROM SULFOLOBUS TITLE 2 TOKODAII STRAIN7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE THYMIDYLATE KINASE; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: DTMP KINASE; COMPND 5 EC: 2.7.4.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS TOKODAII STRAIN 7; SOURCE 3 ORGANISM_TAXID: 273063; SOURCE 4 STRAIN: 7; SOURCE 5 GENE: TMK, STK_15430; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS KINASE, TRANSFERASE, ROSSMANN FOLD, NUCLEOTIDE BOUND EXPDTA X-RAY DIFFRACTION AUTHOR A.BISWAS,J.JEYAKANTHAN,K.SEKAR,S.KURAMITSU,S.YOKOYAMA REVDAT 3 08-NOV-23 5H70 1 LINK REVDAT 2 26-FEB-20 5H70 1 REMARK REVDAT 1 07-DEC-16 5H70 0 SPRSDE 07-DEC-16 5H70 4RZU JRNL AUTH A.BISWAS,J.JEYAKANTHAN,K.SEKAR,S.KURAMITSU,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF ADP BOUND DTMP KINASE (ST1543) FROM JRNL TITL 2 SULFOLOBUS TOKODAII STRAIN7 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 18081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 937 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4644 - 4.5899 0.99 2603 127 0.2081 0.2521 REMARK 3 2 4.5899 - 3.6436 1.00 2492 114 0.1969 0.2664 REMARK 3 3 3.6436 - 3.1831 1.00 2433 137 0.2614 0.3470 REMARK 3 4 3.1831 - 2.8921 1.00 2415 134 0.2767 0.3406 REMARK 3 5 2.8921 - 2.6849 1.00 2409 134 0.2782 0.3648 REMARK 3 6 2.6849 - 2.5266 1.00 2412 136 0.2989 0.3473 REMARK 3 7 2.5266 - 2.4000 1.00 2380 155 0.3093 0.4081 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3268 REMARK 3 ANGLE : 1.191 4466 REMARK 3 CHIRALITY : 0.067 510 REMARK 3 PLANARITY : 0.007 559 REMARK 3 DIHEDRAL : 14.819 1911 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 3:209) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3593 2.6687 2.3786 REMARK 3 T TENSOR REMARK 3 T11: 0.5515 T22: 0.3924 REMARK 3 T33: 0.3490 T12: 0.0589 REMARK 3 T13: -0.0347 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 2.8976 L22: 2.9484 REMARK 3 L33: 3.0134 L12: 0.4561 REMARK 3 L13: -0.8915 L23: 1.9729 REMARK 3 S TENSOR REMARK 3 S11: -0.1722 S12: 0.0546 S13: 0.0731 REMARK 3 S21: -0.0780 S22: 0.0578 S23: 0.3456 REMARK 3 S31: -0.3821 S32: -0.0529 S33: 0.1060 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 4:209) REMARK 3 ORIGIN FOR THE GROUP (A): 33.1167 -9.0315 -24.9990 REMARK 3 T TENSOR REMARK 3 T11: 0.5663 T22: 1.0277 REMARK 3 T33: 0.7368 T12: -0.1956 REMARK 3 T13: 0.1802 T23: -0.4719 REMARK 3 L TENSOR REMARK 3 L11: 3.0417 L22: 2.7325 REMARK 3 L33: 2.4330 L12: 0.9232 REMARK 3 L13: -1.0268 L23: 1.0303 REMARK 3 S TENSOR REMARK 3 S11: -0.3672 S12: 0.9963 S13: -0.7437 REMARK 3 S21: -0.8660 S22: 0.8130 S23: -1.0000 REMARK 3 S31: -0.1778 S32: 0.5120 S33: -0.3317 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5H70 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1300002072. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18674 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 57.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.38500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2PLR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% PEG 200, 100MM HEPES, PH 7.5, REMARK 280 VAPOR DIFFUSION, ADP, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.58550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.87900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.89950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.87900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.58550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.89950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ASP B 210 REMARK 465 ASN B 211 REMARK 465 SER B 212 REMARK 465 PHE B 213 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 SER A 41 REMARK 465 ASP A 210 REMARK 465 ASN A 211 REMARK 465 SER A 212 REMARK 465 PHE A 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 31 CG CD CE NZ REMARK 470 ILE B 48 CG1 CG2 CD1 REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 GLU B 51 CG CD OE1 OE2 REMARK 470 LYS B 53 CG CD CE NZ REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 ASP B 56 CG OD1 OD2 REMARK 470 LYS B 84 CG CD CE NZ REMARK 470 SER B 85 OG REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 GLU B 137 CG CD OE1 OE2 REMARK 470 LYS B 141 CG CD CE NZ REMARK 470 LYS B 143 CG CD CE NZ REMARK 470 LYS B 145 CG CD CE NZ REMARK 470 LYS B 147 CG CD CE NZ REMARK 470 GLN B 149 CG CD OE1 NE2 REMARK 470 GLU B 162 CG CD OE1 OE2 REMARK 470 GLU B 163 CG CD OE1 OE2 REMARK 470 LYS B 203 CG CD CE NZ REMARK 470 GLU B 207 CG CD OE1 OE2 REMARK 470 LEU B 208 CG CD1 CD2 REMARK 470 ILE B 209 CG1 CG2 CD1 REMARK 470 ILE A 12 CG1 CG2 CD1 REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 LEU A 30 CG CD1 CD2 REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 VAL A 34 CG1 CG2 REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 ASN A 40 CG OD1 ND2 REMARK 470 SER A 42 OG REMARK 470 ASP A 43 CG OD1 OD2 REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 LYS A 84 CG CD CE NZ REMARK 470 ILE A 90 CG1 CG2 CD1 REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 ILE A 124 CG1 CG2 CD1 REMARK 470 ASP A 133 CG OD1 OD2 REMARK 470 ILE A 134 CG1 CG2 CD1 REMARK 470 LEU A 136 CG CD1 CD2 REMARK 470 GLU A 137 CG CD OE1 OE2 REMARK 470 ILE A 139 CG1 CG2 CD1 REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 SER A 142 OG REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 LYS A 145 CG CD CE NZ REMARK 470 ILE A 146 CG1 CG2 CD1 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 GLN A 149 CG CD OE1 NE2 REMARK 470 ILE A 155 CG1 CG2 CD1 REMARK 470 GLU A 162 CG CD OE1 OE2 REMARK 470 GLU A 163 CG CD OE1 OE2 REMARK 470 PHE A 165 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 166 CG CD1 CD2 REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 LYS A 178 CG CD CE NZ REMARK 470 LYS A 181 CG CD CE NZ REMARK 470 VAL A 187 CG1 CG2 REMARK 470 ILE A 188 CG1 CG2 CD1 REMARK 470 LYS A 195 CG CD CE NZ REMARK 470 GLU A 196 CG CD OE1 OE2 REMARK 470 ILE A 197 CG1 CG2 CD1 REMARK 470 GLN A 198 CG CD OE1 NE2 REMARK 470 GLN A 200 CG CD OE1 NE2 REMARK 470 ILE A 201 CG1 CG2 CD1 REMARK 470 LYS A 203 CG CD CE NZ REMARK 470 PHE A 204 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 207 CG CD OE1 OE2 REMARK 470 ILE A 209 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 18 O1B ADP A 301 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 82 CA - CB - CG ANGL. DEV. = -11.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP B 39 36.98 -81.90 REMARK 500 LYS B 53 -1.13 -59.88 REMARK 500 ARG B 93 149.96 74.08 REMARK 500 ARG B 93 150.04 73.86 REMARK 500 TYR B 94 -154.92 -155.44 REMARK 500 LYS B 192 -176.31 -59.75 REMARK 500 TRP A 39 30.71 -80.80 REMARK 500 ASP A 43 -169.70 -78.58 REMARK 500 ARG A 93 132.66 77.29 REMARK 500 ARG A 93 132.95 76.83 REMARK 500 TYR A 94 -155.60 -129.34 REMARK 500 LYS A 192 -176.10 -59.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 18 OG REMARK 620 2 ADP B 301 O3B 70.4 REMARK 620 3 HOH B 401 O 61.9 54.4 REMARK 620 4 HOH B 402 O 121.3 71.6 59.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 18 OG REMARK 620 2 ADP A 301 O1B 55.8 REMARK 620 3 HOH A 403 O 107.8 126.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PLR RELATED DB: PDB DBREF 5H70 B 1 213 UNP Q970Q8 KTHY2_SULTO 1 213 DBREF 5H70 A 1 213 UNP Q970Q8 KTHY2_SULTO 1 213 SEQRES 1 B 213 MET LYS LYS GLY VAL LEU ILE ALA PHE GLU GLY ILE ASP SEQRES 2 B 213 GLY SER GLY LYS SER SER GLN ALA THR LEU LEU LYS ASP SEQRES 3 B 213 TRP ILE GLU LEU LYS ARG ASP VAL TYR LEU THR GLU TRP SEQRES 4 B 213 ASN SER SER ASP TRP ILE HIS ASP ILE ILE LYS GLU ALA SEQRES 5 B 213 LYS LYS LYS ASP LEU LEU THR PRO LEU THR PHE SER LEU SEQRES 6 B 213 ILE HIS ALA THR ASP PHE SER ASP ARG TYR GLU ARG TYR SEQRES 7 B 213 ILE LEU PRO MET LEU LYS SER GLY PHE ILE VAL ILE SER SEQRES 8 B 213 ASP ARG TYR ILE TYR THR ALA TYR ALA ARG ASP SER VAL SEQRES 9 B 213 ARG GLY VAL ASP ILE ASP TRP VAL LYS LYS LEU TYR SER SEQRES 10 B 213 PHE ALA ILE LYS PRO ASP ILE THR PHE TYR ILE ARG VAL SEQRES 11 B 213 SER PRO ASP ILE ALA LEU GLU ARG ILE LYS LYS SER LYS SEQRES 12 B 213 ARG LYS ILE LYS PRO GLN GLU ALA GLY ALA ASP ILE PHE SEQRES 13 B 213 PRO GLY LEU SER PRO GLU GLU GLY PHE LEU LYS TYR GLN SEQRES 14 B 213 GLY LEU ILE THR GLU VAL TYR ASP LYS LEU VAL LYS ASP SEQRES 15 B 213 GLU ASN PHE ILE VAL ILE ASP GLY THR LYS THR PRO LYS SEQRES 16 B 213 GLU ILE GLN ILE GLN ILE ARG LYS PHE VAL GLY GLU LEU SEQRES 17 B 213 ILE ASP ASN SER PHE SEQRES 1 A 213 MET LYS LYS GLY VAL LEU ILE ALA PHE GLU GLY ILE ASP SEQRES 2 A 213 GLY SER GLY LYS SER SER GLN ALA THR LEU LEU LYS ASP SEQRES 3 A 213 TRP ILE GLU LEU LYS ARG ASP VAL TYR LEU THR GLU TRP SEQRES 4 A 213 ASN SER SER ASP TRP ILE HIS ASP ILE ILE LYS GLU ALA SEQRES 5 A 213 LYS LYS LYS ASP LEU LEU THR PRO LEU THR PHE SER LEU SEQRES 6 A 213 ILE HIS ALA THR ASP PHE SER ASP ARG TYR GLU ARG TYR SEQRES 7 A 213 ILE LEU PRO MET LEU LYS SER GLY PHE ILE VAL ILE SER SEQRES 8 A 213 ASP ARG TYR ILE TYR THR ALA TYR ALA ARG ASP SER VAL SEQRES 9 A 213 ARG GLY VAL ASP ILE ASP TRP VAL LYS LYS LEU TYR SER SEQRES 10 A 213 PHE ALA ILE LYS PRO ASP ILE THR PHE TYR ILE ARG VAL SEQRES 11 A 213 SER PRO ASP ILE ALA LEU GLU ARG ILE LYS LYS SER LYS SEQRES 12 A 213 ARG LYS ILE LYS PRO GLN GLU ALA GLY ALA ASP ILE PHE SEQRES 13 A 213 PRO GLY LEU SER PRO GLU GLU GLY PHE LEU LYS TYR GLN SEQRES 14 A 213 GLY LEU ILE THR GLU VAL TYR ASP LYS LEU VAL LYS ASP SEQRES 15 A 213 GLU ASN PHE ILE VAL ILE ASP GLY THR LYS THR PRO LYS SEQRES 16 A 213 GLU ILE GLN ILE GLN ILE ARG LYS PHE VAL GLY GLU LEU SEQRES 17 A 213 ILE ASP ASN SER PHE HET ADP B 301 27 HET EDO B 302 4 HET MG B 303 1 HET ADP A 301 27 HET EDO A 302 4 HET PGE A 303 10 HET MG A 304 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETNAM PGE TRIETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 5 MG 2(MG 2+) FORMUL 8 PGE C6 H14 O4 FORMUL 10 HOH *6(H2 O) HELIX 1 AA1 GLY B 16 GLU B 29 1 14 HELIX 2 AA2 SER B 42 ASP B 56 1 15 HELIX 3 AA3 THR B 59 TYR B 78 1 20 HELIX 4 AA4 TYR B 78 SER B 85 1 8 HELIX 5 AA5 TYR B 94 VAL B 104 1 11 HELIX 6 AA6 ASP B 108 TYR B 116 1 9 HELIX 7 AA7 SER B 117 ALA B 119 5 3 HELIX 8 AA8 SER B 131 SER B 142 1 12 HELIX 9 AA9 SER B 160 VAL B 180 1 21 HELIX 10 AB1 THR B 193 ILE B 209 1 17 HELIX 11 AB2 GLY A 16 ARG A 32 1 17 HELIX 12 AB3 ASP A 43 LYS A 53 1 11 HELIX 13 AB4 THR A 59 TYR A 78 1 20 HELIX 14 AB5 TYR A 78 SER A 85 1 8 HELIX 15 AB6 TYR A 94 VAL A 104 1 11 HELIX 16 AB7 ASP A 108 SER A 117 1 10 HELIX 17 AB8 SER A 131 SER A 142 1 12 HELIX 18 AB9 LYS A 147 GLY A 152 1 6 HELIX 19 AC1 SER A 160 VAL A 180 1 21 HELIX 20 AC2 THR A 193 GLU A 207 1 15 SHEET 1 AA1 5 VAL B 34 GLU B 38 0 SHEET 2 AA1 5 ILE B 88 ASP B 92 1 O ILE B 90 N THR B 37 SHEET 3 AA1 5 VAL B 5 GLU B 10 1 N ILE B 7 O VAL B 89 SHEET 4 AA1 5 ILE B 124 ARG B 129 1 O PHE B 126 N ALA B 8 SHEET 5 AA1 5 PHE B 185 ASP B 189 1 O ILE B 186 N THR B 125 SHEET 1 AA2 5 VAL A 34 GLU A 38 0 SHEET 2 AA2 5 ILE A 88 ASP A 92 1 O ASP A 92 N THR A 37 SHEET 3 AA2 5 VAL A 5 GLU A 10 1 N ILE A 7 O VAL A 89 SHEET 4 AA2 5 ILE A 124 ARG A 129 1 O PHE A 126 N ALA A 8 SHEET 5 AA2 5 PHE A 185 ASP A 189 1 O ILE A 188 N ARG A 129 LINK OG SER B 18 MG MG B 303 1555 1555 2.52 LINK O3B ADP B 301 MG MG B 303 1555 1555 2.68 LINK MG MG B 303 O HOH B 401 1555 1555 2.49 LINK MG MG B 303 O HOH B 402 1555 1555 2.60 LINK OG SER A 18 MG MG A 304 1555 1555 2.25 LINK O1B ADP A 301 MG MG A 304 1555 1555 2.16 LINK MG MG A 304 O HOH A 403 1555 1555 2.70 SITE 1 AC1 14 GLY B 14 SER B 15 GLY B 16 LYS B 17 SITE 2 AC1 14 SER B 18 SER B 19 ARG B 138 LYS B 192 SITE 3 AC1 14 THR B 193 PRO B 194 ILE B 197 MG B 303 SITE 4 AC1 14 HOH B 401 HOH B 402 SITE 1 AC2 2 ASP B 108 TRP B 111 SITE 1 AC3 5 SER B 18 ASP B 92 ADP B 301 HOH B 401 SITE 2 AC3 5 HOH B 402 SITE 1 AC4 12 ASP A 13 GLY A 14 SER A 15 GLY A 16 SITE 2 AC4 12 LYS A 17 SER A 18 SER A 19 ARG A 138 SITE 3 AC4 12 SER A 142 LYS A 192 PRO A 194 MG A 304 SITE 1 AC5 4 PHE A 63 ARG A 105 ASP A 154 PGE A 303 SITE 1 AC6 5 HIS A 46 HIS A 67 GLN A 149 ASP A 154 SITE 2 AC6 5 EDO A 302 SITE 1 AC7 4 SER A 18 ASP A 92 ADP A 301 HOH A 403 CRYST1 49.171 63.799 141.758 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020337 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015674 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007054 0.00000